RNA–Protein interactions for RNA: ENST00000538970.5

VAMP1-206, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best)

Gene VAMP1, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-206ENST00000538970 FAM135BQ49AJ0 1406 aa19.26■□□□□ 0.67
VAMP1-206ENST00000538970 IQGAP3Q86VI3 1631 aa19.26■□□□□ 0.67
VAMP1-206ENST00000538970 NWD1Q149M9 1564 aa19.26■□□□□ 0.67
VAMP1-206ENST00000538970 TMEM131LA2VDJ0 1609 aa19.25■□□□□ 0.67
VAMP1-206ENST00000538970 E9PCH4 1651 aa19.25■□□□□ 0.67
VAMP1-206ENST00000538970 SLC26A8Q96RN1 970 aa19.25■□□□□ 0.67
VAMP1-206ENST00000538970 TMEM94Q12767 1356 aa19.24■□□□□ 0.67
VAMP1-206ENST00000538970 KCNA6P17658 529 aa19.24■□□□□ 0.67
VAMP1-206ENST00000538970 NKTRP30414 1462 aaKnown RBP19.23■□□□□ 0.67
VAMP1-206ENST00000538970 ROBO1Q9Y6N7 1651 aa19.23■□□□□ 0.67
VAMP1-206ENST00000538970 MYO5BQ9ULV0 1848 aa19.22■□□□□ 0.67
VAMP1-206ENST00000538970 RIMS2Q9UQ26 1411 aa19.22■□□□□ 0.67
VAMP1-206ENST00000538970 PLEKHG1Q9ULL1 1385 aa19.21■□□□□ 0.67
VAMP1-206ENST00000538970 RBM33Q96EV2 1170 aaKnown RBP19.19■□□□□ 0.66
VAMP1-206ENST00000538970 ITGAEP38570 1179 aa19.18■□□□□ 0.66
VAMP1-206ENST00000538970 NUP155O75694 1391 aa19.18■□□□□ 0.66
VAMP1-206ENST00000538970 PPP1R15AO75807 674 aaPredicted RBP19.17■□□□□ 0.66
VAMP1-206ENST00000538970 PPARGC1BQ86YN6 1023 aaKnown RBP19.17■□□□□ 0.66
VAMP1-206ENST00000538970 BCANQ96GW7 911 aa19.17■□□□□ 0.66
VAMP1-206ENST00000538970 PROSER2Q86WR7 435 aaPredicted RBP19.16■□□□□ 0.66
VAMP1-206ENST00000538970 HDGFP51858 240 aaKnown RBP19.15■□□□□ 0.66
VAMP1-206ENST00000538970 UPF1Q92900 1129 aaKnown RBP eCLIP19.15■□□□□ 0.66
VAMP1-206ENST00000538970 CHGAP10645 457 aaKnown RBP19.14■□□□□ 0.65
VAMP1-206ENST00000538970 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.13■□□□□ 0.65
VAMP1-206ENST00000538970 ADAMTS13Q76LX8 1427 aa19.13■□□□□ 0.65
VAMP1-206ENST00000538970 DIP2AQ14689 1571 aa19.13■□□□□ 0.65
VAMP1-206ENST00000538970 CHD2O14647 1828 aaKnown RBP19.13■□□□□ 0.65
VAMP1-206ENST00000538970 RRBP1Q9P2E9 1410 aaKnown RBP19.11■□□□□ 0.65
VAMP1-206ENST00000538970 MSH6P52701 1360 aa19.11■□□□□ 0.65
VAMP1-206ENST00000538970 TBX22Q9Y458 520 aa19.11■□□□□ 0.65
VAMP1-206ENST00000538970 PHLPP1O60346 1717 aa19.11■□□□□ 0.65
VAMP1-206ENST00000538970 SPHKAPQ2M3C7 1700 aa19.09■□□□□ 0.65
VAMP1-206ENST00000538970 TRIM52Q96A61 297 aa19.09■□□□□ 0.65
VAMP1-206ENST00000538970 LRP6O75581 1613 aa19.09■□□□□ 0.65
VAMP1-206ENST00000538970 NUTM2DQ5VT03 806 aaPredicted RBP19.08■□□□□ 0.64
VAMP1-206ENST00000538970 PIK3R4Q99570 1358 aa19.07■□□□□ 0.64
VAMP1-206ENST00000538970 JCADQ9P266 1359 aa19.07■□□□□ 0.64
VAMP1-206ENST00000538970 NCOA3Q9Y6Q9 1424 aa19.07■□□□□ 0.64
VAMP1-206ENST00000538970 TRPM2O94759 1503 aa19.06■□□□□ 0.64
VAMP1-206ENST00000538970 COL16A1Q07092 1604 aaPredicted RBP19.04■□□□□ 0.64
VAMP1-206ENST00000538970 NAIPQ13075 1403 aa19.04■□□□□ 0.64
VAMP1-206ENST00000538970 NRXN3Q9Y4C0 1643 aa19.03■□□□□ 0.64
VAMP1-206ENST00000538970 SLAIN2Q9P270 581 aa19.03■□□□□ 0.64
VAMP1-206ENST00000538970 SETBP1Q9Y6X0 1596 aa19.02■□□□□ 0.64
VAMP1-206ENST00000538970 PTPRUQ92729 1446 aa19.01■□□□□ 0.63
VAMP1-206ENST00000538970 CLTCL1P53675 1640 aa19.01■□□□□ 0.63
VAMP1-206ENST00000538970 SRCAPQ6ZRS2 3230 aa19.01■□□□□ 0.63
VAMP1-206ENST00000538970 XRN1Q8IZH2 1706 aaKnown RBP19■□□□□ 0.63
VAMP1-206ENST00000538970 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.99■□□□□ 0.63
VAMP1-206ENST00000538970 MEX3CQ5U5Q3 659 aaKnown RBP18.98■□□□□ 0.63
VAMP1-206ENST00000538970 C14orf37Q86TY3 774 aa18.98■□□□□ 0.63
VAMP1-206ENST00000538970 NEXMIFQ5QGS0 1516 aa18.98■□□□□ 0.63
VAMP1-206ENST00000538970 HFM1A2PYH4 1435 aa18.98■□□□□ 0.63
VAMP1-206ENST00000538970 ZNF772Q68DY9 489 aaPredicted RBP18.97■□□□□ 0.63
VAMP1-206ENST00000538970 AMOTL2Q9Y2J4 779 aa18.97■□□□□ 0.63
VAMP1-206ENST00000538970 ZNF326Q5BKZ1 582 aaKnown RBP18.96■□□□□ 0.63
VAMP1-206ENST00000538970 CADPS2Q86UW7 1296 aa18.96■□□□□ 0.63
VAMP1-206ENST00000538970 C19orf44Q9H6X5 657 aa18.96■□□□□ 0.63
VAMP1-206ENST00000538970 SPATA31A6Q5VVP1 1343 aa18.96■□□□□ 0.63
VAMP1-206ENST00000538970 DCCP43146 1447 aa18.94■□□□□ 0.62
VAMP1-206ENST00000538970 AHDC1Q5TGY3 1603 aaPredicted RBP18.94■□□□□ 0.62
VAMP1-206ENST00000538970 METP08581 1390 aa18.93■□□□□ 0.62
VAMP1-206ENST00000538970 ATF3P18847 181 aa18.93■□□□□ 0.62
VAMP1-206ENST00000538970 RXRBP28702 533 aa18.93■□□□□ 0.62
VAMP1-206ENST00000538970 SHPRHQ149N8 1683 aa18.92■□□□□ 0.62
VAMP1-206ENST00000538970 KIF1BO60333 1816 aa18.91■□□□□ 0.62
VAMP1-206ENST00000538970 CDK12Q9NYV4 1490 aaPredicted RBP18.89■□□□□ 0.61
VAMP1-206ENST00000538970 NUTM2BA6NNL0 878 aaPredicted RBP18.87■□□□□ 0.61
VAMP1-206ENST00000538970 NUTM2EB1AL46 878 aaPredicted RBP18.87■□□□□ 0.61
VAMP1-206ENST00000538970 MST1RQ04912 1400 aa18.87■□□□□ 0.61
VAMP1-206ENST00000538970 BRINP3Q76B58 766 aa18.87■□□□□ 0.61
VAMP1-206ENST00000538970 NUTM2AQ8IVF1 878 aaPredicted RBP18.87■□□□□ 0.61
VAMP1-206ENST00000538970 ASXL1Q8IXJ9 1541 aa18.87■□□□□ 0.61
VAMP1-206ENST00000538970 ADGRL3Q9HAR2 1447 aa18.87■□□□□ 0.61
VAMP1-206ENST00000538970 RGS12O14924 1447 aa18.85■□□□□ 0.61
VAMP1-206ENST00000538970 SLC4A1APQ9BWU0 796 aaKnown RBP18.85■□□□□ 0.61
VAMP1-206ENST00000538970 NALCNQ8IZF0 1738 aa18.85■□□□□ 0.61
VAMP1-206ENST00000538970 AFF2P51816 1311 aa18.84■□□□□ 0.61
VAMP1-206ENST00000538970 PTCH1Q13635 1447 aa18.83■□□□□ 0.61
VAMP1-206ENST00000538970 NHSL1Q5SYE7 1610 aa18.82■□□□□ 0.6
VAMP1-206ENST00000538970 PRAG1Q86YV5 1406 aa18.82■□□□□ 0.6
VAMP1-206ENST00000538970 PPLO60437 1756 aa18.81■□□□□ 0.6
VAMP1-206ENST00000538970 RPGRIP1LQ68CZ1 1315 aa18.81■□□□□ 0.6
VAMP1-206ENST00000538970 VGFO15240 615 aaPredicted RBP18.81■□□□□ 0.6
VAMP1-206ENST00000538970 SETD5Q9C0A6 1442 aa18.8■□□□□ 0.6
VAMP1-206ENST00000538970 ROBO2Q9HCK4 1378 aa18.78■□□□□ 0.6
VAMP1-206ENST00000538970 FOXD1Q16676 465 aa18.77■□□□□ 0.6
VAMP1-206ENST00000538970 C1orf167Q5SNV9 1468 aa18.76■□□□□ 0.59
VAMP1-206ENST00000538970 CCDC144AA2RUR9 1427 aa18.75■□□□□ 0.59
VAMP1-206ENST00000538970 QTRT2Q9H974 415 aaKnown RBP18.75■□□□□ 0.59
VAMP1-206ENST00000538970 C8orf37Q96NL8 207 aa18.74■□□□□ 0.59
VAMP1-206ENST00000538970 SPATA31E1Q6ZUB1 1445 aa18.74■□□□□ 0.59
VAMP1-206ENST00000538970 RBM6P78332 1123 aaKnown RBP18.73■□□□□ 0.59
VAMP1-206ENST00000538970 LAMC1P11047 1609 aa18.73■□□□□ 0.59
VAMP1-206ENST00000538970 DDX17Q92841 729 aaKnown RBP18.72■□□□□ 0.59
VAMP1-206ENST00000538970 IFT172Q9UG01 1749 aa18.71■□□□□ 0.59
VAMP1-206ENST00000538970 PNPLA6Q8IY17 1366 aa18.71■□□□□ 0.59
VAMP1-206ENST00000538970 LRRC59Q96AG4 307 aaKnown RBP18.71■□□□□ 0.59
VAMP1-206ENST00000538970 MPHOSPH9Q99550 1183 aa18.71■□□□□ 0.59
VAMP1-206ENST00000538970 CDC42BPGQ6DT37 1551 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms