RNA–Protein interactions for RNA: ENST00000538834.5

CD9-208, Transcript of CD9 molecule, humanhuman

TSL 5

Gene CD9, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-208ENST00000538834 XIRP1Q702N8 1843 aaKnown RBP20.52■□□□□ 0.88
CD9-208ENST00000538834 CHD2O14647 1828 aaKnown RBP20.51■□□□□ 0.87
CD9-208ENST00000538834 STAG3Q9UJ98 1225 aa20.51■□□□□ 0.87
CD9-208ENST00000538834 EID1Q9Y6B2 187 aa20.51■□□□□ 0.87
CD9-208ENST00000538834 CPS1P31327 1500 aa20.51■□□□□ 0.87
CD9-208ENST00000538834 PLEKHG1Q9ULL1 1385 aa20.49■□□□□ 0.87
CD9-208ENST00000538834 NRXN3Q9Y4C0 1643 aa20.49■□□□□ 0.87
CD9-208ENST00000538834 NEXMIFQ5QGS0 1516 aa20.48■□□□□ 0.87
CD9-208ENST00000538834 FBXO41Q8TF61 875 aa20.48■□□□□ 0.87
CD9-208ENST00000538834 PPLO60437 1756 aa20.48■□□□□ 0.87
CD9-208ENST00000538834 IFT172Q9UG01 1749 aa20.47■□□□□ 0.87
CD9-208ENST00000538834 ILDR1Q86SU0 546 aaPredicted RBP20.46■□□□□ 0.87
CD9-208ENST00000538834 NWD1Q149M9 1564 aa20.46■□□□□ 0.87
CD9-208ENST00000538834 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.45■□□□□ 0.86
CD9-208ENST00000538834 ADAMTS13Q76LX8 1427 aa20.44■□□□□ 0.86
CD9-208ENST00000538834 DIP2AQ14689 1571 aa20.44■□□□□ 0.86
CD9-208ENST00000538834 SETBP1Q9Y6X0 1596 aa20.44■□□□□ 0.86
CD9-208ENST00000538834 HDGFP51858 240 aaKnown RBP20.43■□□□□ 0.86
CD9-208ENST00000538834 FOXD1Q16676 465 aa20.43■□□□□ 0.86
CD9-208ENST00000538834 SPATA31E1Q6ZUB1 1445 aa20.43■□□□□ 0.86
CD9-208ENST00000538834 SETD1AO15047 1707 aaKnown RBP20.42■□□□□ 0.86
CD9-208ENST00000538834 LRRC7Q96NW7 1537 aa20.42■□□□□ 0.86
CD9-208ENST00000538834 ALKQ9UM73 1620 aa20.4■□□□□ 0.86
CD9-208ENST00000538834 TBX22Q9Y458 520 aa20.4■□□□□ 0.86
CD9-208ENST00000538834 CHGAP10645 457 aaKnown RBP20.39■□□□□ 0.85
CD9-208ENST00000538834 ANKRD30BQ9BXX2 1392 aa20.38■□□□□ 0.85
CD9-208ENST00000538834 RPGRIP1LQ68CZ1 1315 aa20.37■□□□□ 0.85
CD9-208ENST00000538834 CCDC144AA2RUR9 1427 aa20.36■□□□□ 0.85
CD9-208ENST00000538834 PIK3R4Q99570 1358 aa20.36■□□□□ 0.85
CD9-208ENST00000538834 KCNA6P17658 529 aa20.36■□□□□ 0.85
CD9-208ENST00000538834 SLC26A8Q96RN1 970 aa20.36■□□□□ 0.85
CD9-208ENST00000538834 NKTRP30414 1462 aaKnown RBP20.35■□□□□ 0.85
CD9-208ENST00000538834 XRN1Q8IZH2 1706 aaKnown RBP20.34■□□□□ 0.85
CD9-208ENST00000538834 NUTM2DQ5VT03 806 aaPredicted RBP20.32■□□□□ 0.84
CD9-208ENST00000538834 PTPRUQ92729 1446 aa20.31■□□□□ 0.84
CD9-208ENST00000538834 PPP1R15AO75807 674 aaPredicted RBP20.3■□□□□ 0.84
CD9-208ENST00000538834 ZNF326Q5BKZ1 582 aaKnown RBP20.29■□□□□ 0.84
CD9-208ENST00000538834 VGFO15240 615 aaPredicted RBP20.28■□□□□ 0.84
CD9-208ENST00000538834 NRXN1Q9ULB1 1477 aa20.27■□□□□ 0.84
CD9-208ENST00000538834 PRAG1Q86YV5 1406 aa20.27■□□□□ 0.83
CD9-208ENST00000538834 NCOA3Q9Y6Q9 1424 aa20.26■□□□□ 0.83
CD9-208ENST00000538834 METP08581 1390 aa20.25■□□□□ 0.83
CD9-208ENST00000538834 TMEM94Q12767 1356 aa20.23■□□□□ 0.83
CD9-208ENST00000538834 TRIM26Q12899 539 aaPredicted RBP20.23■□□□□ 0.83
CD9-208ENST00000538834 MYOM2P54296 1465 aa20.23■□□□□ 0.83
CD9-208ENST00000538834 ADGRF5Q8IZF2 1346 aa20.22■□□□□ 0.83
CD9-208ENST00000538834 PIK3C2GO75747 1445 aa20.21■□□□□ 0.83
CD9-208ENST00000538834 BCANQ96GW7 911 aa20.21■□□□□ 0.83
CD9-208ENST00000538834 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.2■□□□□ 0.82
CD9-208ENST00000538834 UBAP1LF5GYI3 381 aa20.19■□□□□ 0.82
CD9-208ENST00000538834 SENP3Q9H4L4 574 aaPredicted RBP20.19■□□□□ 0.82
CD9-208ENST00000538834 ASXL1Q8IXJ9 1541 aa20.18■□□□□ 0.82
CD9-208ENST00000538834 LAMC1P11047 1609 aa20.18■□□□□ 0.82
CD9-208ENST00000538834 TOM1O60784 492 aa20.18■□□□□ 0.82
CD9-208ENST00000538834 RGL3Q3MIN7 710 aa20.18■□□□□ 0.82
CD9-208ENST00000538834 PROSER2Q86WR7 435 aaPredicted RBP20.18■□□□□ 0.82
CD9-208ENST00000538834 AMOTL2Q9Y2J4 779 aa20.18■□□□□ 0.82
CD9-208ENST00000538834 KNDC1Q76NI1 1749 aa20.18■□□□□ 0.82
CD9-208ENST00000538834 DHX57Q6P158 1386 aaKnown RBP20.16■□□□□ 0.82
CD9-208ENST00000538834 NALCNQ8IZF0 1738 aa20.14■□□□□ 0.81
CD9-208ENST00000538834 PTCH1Q13635 1447 aa20.14■□□□□ 0.81
CD9-208ENST00000538834 TECPR2O15040 1411 aa20.13■□□□□ 0.81
CD9-208ENST00000538834 STAC3Q96MF2 364 aa20.13■□□□□ 0.81
CD9-208ENST00000538834 RBM33Q96EV2 1170 aaKnown RBP20.12■□□□□ 0.81
CD9-208ENST00000538834 C14orf93Q9H972 538 aaKnown RBP20.12■□□□□ 0.81
CD9-208ENST00000538834 FAM135BQ49AJ0 1406 aa20.11■□□□□ 0.81
CD9-208ENST00000538834 DCCP43146 1447 aa20.1■□□□□ 0.81
CD9-208ENST00000538834 KIAA1210Q9ULL0 1709 aa20.09■□□□□ 0.81
CD9-208ENST00000538834 MSH6P52701 1360 aa20.08■□□□□ 0.81
CD9-208ENST00000538834 ROBO2Q9HCK4 1378 aa20.08■□□□□ 0.81
CD9-208ENST00000538834 ADGRB1O14514 1584 aa20.08■□□□□ 0.81
CD9-208ENST00000538834 ROBO1Q9Y6N7 1651 aa20.08■□□□□ 0.81
CD9-208ENST00000538834 C19orf44Q9H6X5 657 aa20.08■□□□□ 0.81
CD9-208ENST00000538834 LRPPRCP42704 1394 aaKnown RBP20.08■□□□□ 0.8
CD9-208ENST00000538834 ABCC11Q96J66 1382 aa20.08■□□□□ 0.8
CD9-208ENST00000538834 ADGRL3Q9HAR2 1447 aa20.06■□□□□ 0.8
CD9-208ENST00000538834 YTHDC2Q9H6S0 1430 aaKnown RBP20.04■□□□□ 0.8
CD9-208ENST00000538834 SIRT1Q96EB6 747 aa20.04■□□□□ 0.8
CD9-208ENST00000538834 CFAP70Q5T0N1 1121 aa20.03■□□□□ 0.8
CD9-208ENST00000538834 PIP4K2BP78356 416 aa20.02■□□□□ 0.8
CD9-208ENST00000538834 DCAF11Q8TEB1 546 aa20.02■□□□□ 0.8
CD9-208ENST00000538834 SLAIN2Q9P270 581 aa20.02■□□□□ 0.8
CD9-208ENST00000538834 DLC1Q96QB1 1528 aa20.02■□□□□ 0.79
CD9-208ENST00000538834 HSPA1LP34931 641 aa20.01■□□□□ 0.79
CD9-208ENST00000538834 TMEM132EQ6IEE7 984 aa20■□□□□ 0.79
CD9-208ENST00000538834 CADPS2Q86UW7 1296 aa20■□□□□ 0.79
CD9-208ENST00000538834 MST1RQ04912 1400 aa20■□□□□ 0.79
CD9-208ENST00000538834 CDC42BPGQ6DT37 1551 aa19.99■□□□□ 0.79
CD9-208ENST00000538834 ARHGEF28Q8N1W1 1705 aaKnown RBP19.97■□□□□ 0.79
CD9-208ENST00000538834 SIN3AQ96ST3 1273 aa19.97■□□□□ 0.79
CD9-208ENST00000538834 NHSL1Q5SYE7 1610 aa19.97■□□□□ 0.79
CD9-208ENST00000538834 AHDC1Q5TGY3 1603 aaPredicted RBP19.97■□□□□ 0.79
CD9-208ENST00000538834 PHLPP1O60346 1717 aa19.96■□□□□ 0.79
CD9-208ENST00000538834 COL16A1Q07092 1604 aaPredicted RBP19.95■□□□□ 0.78
CD9-208ENST00000538834 KDM2AQ9Y2K7 1162 aa19.95■□□□□ 0.78
CD9-208ENST00000538834 FMN2Q9NZ56 1722 aa19.95■□□□□ 0.78
CD9-208ENST00000538834 PLEKHH1Q9ULM0 1364 aa19.95■□□□□ 0.78
CD9-208ENST00000538834 RGPD8O14715 1765 aaPredicted RBP19.94■□□□□ 0.78
CD9-208ENST00000538834 ATF3P18847 181 aa19.94■□□□□ 0.78
CD9-208ENST00000538834 L3MBTL2Q969R5 705 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms