RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 EIF4G3O43432 1585 aaKnown RBP19.19■□□□□ 0.66
SYNE1-236ENST00000537750 XRCC6P12956 609 aaKnown RBP eCLIP19.18■□□□□ 0.66
SYNE1-236ENST00000537750 PLA2R1Q13018 1463 aa19.18■□□□□ 0.66
SYNE1-236ENST00000537750 PANK2Q9BZ23 570 aa19.18■□□□□ 0.66
SYNE1-236ENST00000537750 NKTRP30414 1462 aaKnown RBP19.17■□□□□ 0.66
SYNE1-236ENST00000537750 CLUAP1Q96AJ1 413 aa19.16■□□□□ 0.66
SYNE1-236ENST00000537750 WDR7Q9Y4E6 1490 aa19.16■□□□□ 0.66
SYNE1-236ENST00000537750 NAP1L5Q96NT1 182 aaPredicted RBP19.15■□□□□ 0.66
SYNE1-236ENST00000537750 TBC1D2Q9BYX2 928 aa19.15■□□□□ 0.66
SYNE1-236ENST00000537750 CANXP27824 592 aaKnown RBP19.15■□□□□ 0.66
SYNE1-236ENST00000537750 NLRP1Q9C000 1473 aa19.15■□□□□ 0.66
SYNE1-236ENST00000537750 MAPK8IP3Q9UPT6 1336 aa19.15■□□□□ 0.66
SYNE1-236ENST00000537750 GRIN2AQ12879 1464 aa19.14■□□□□ 0.65
SYNE1-236ENST00000537750 CGNL1Q0VF96 1302 aa19.13■□□□□ 0.65
SYNE1-236ENST00000537750 GOLGA6L3A6NEY3 463 aa19.13■□□□□ 0.65
SYNE1-236ENST00000537750 E9PSI1 815 aa19.12■□□□□ 0.65
SYNE1-236ENST00000537750 ABCC10Q5T3U5 1492 aa19.12■□□□□ 0.65
SYNE1-236ENST00000537750 PNNQ9H307 717 aaKnown RBP19.11■□□□□ 0.65
SYNE1-236ENST00000537750 VIRMAQ69YN4 1812 aaKnown RBP19.11■□□□□ 0.65
SYNE1-236ENST00000537750 PDE3AQ14432 1141 aa19.11■□□□□ 0.65
SYNE1-236ENST00000537750 TBC1D32Q96NH3 1257 aa19.11■□□□□ 0.65
SYNE1-236ENST00000537750 TNNQ9UQP3 1299 aa19.1■□□□□ 0.65
SYNE1-236ENST00000537750 CENPJQ9HC77 1338 aaPredicted RBP19.09■□□□□ 0.65
SYNE1-236ENST00000537750 UPF2Q9HAU5 1272 aaKnown RBP19.09■□□□□ 0.65
SYNE1-236ENST00000537750 MAGI1Q96QZ7 1491 aaPredicted RBP19.09■□□□□ 0.65
SYNE1-236ENST00000537750 FSD2A1L4K1 749 aa19.09■□□□□ 0.65
SYNE1-236ENST00000537750 MCM4P33991 863 aa19.08■□□□□ 0.65
SYNE1-236ENST00000537750 PCDHB15Q9Y5E8 787 aa19.08■□□□□ 0.65
SYNE1-236ENST00000537750 PKNOX2Q96KN3 472 aa19.07■□□□□ 0.64
SYNE1-236ENST00000537750 CLASP1Q7Z460 1538 aa19.07■□□□□ 0.64
SYNE1-236ENST00000537750 LAMC1P11047 1609 aa19.07■□□□□ 0.64
SYNE1-236ENST00000537750 FBLN2P98095 1184 aa19.07■□□□□ 0.64
SYNE1-236ENST00000537750 PDZRN3Q9UPQ7 1066 aa19.07■□□□□ 0.64
SYNE1-236ENST00000537750 MRC2Q9UBG0 1479 aa19.06■□□□□ 0.64
SYNE1-236ENST00000537750 JPH4Q96JJ6 628 aa19.06■□□□□ 0.64
SYNE1-236ENST00000537750 CLCN1P35523 988 aa19.06■□□□□ 0.64
SYNE1-236ENST00000537750 NEUROD2Q15784 382 aa19.06■□□□□ 0.64
SYNE1-236ENST00000537750 CHMP7Q8WUX9 453 aaPredicted RBP19.06■□□□□ 0.64
SYNE1-236ENST00000537750 PIK3C2GO75747 1445 aa19.05■□□□□ 0.64
SYNE1-236ENST00000537750 IFT140Q96RY7 1462 aa19.05■□□□□ 0.64
SYNE1-236ENST00000537750 RLBP1P12271 317 aa19.05■□□□□ 0.64
SYNE1-236ENST00000537750 VSIG10Q8N0Z9 540 aa19.05■□□□□ 0.64
SYNE1-236ENST00000537750 ATP10BO94823 1461 aa19.04■□□□□ 0.64
SYNE1-236ENST00000537750 BCL2L13Q9BXK5 485 aa19.04■□□□□ 0.64
SYNE1-236ENST00000537750 CCDC141Q6ZP82 1450 aa19.04■□□□□ 0.64
SYNE1-236ENST00000537750 CARMIL2Q6F5E8 1435 aa19.03■□□□□ 0.64
SYNE1-236ENST00000537750 ASXL1Q8IXJ9 1541 aa19.03■□□□□ 0.64
SYNE1-236ENST00000537750 TRAK2O60296 914 aa19.03■□□□□ 0.64
SYNE1-236ENST00000537750 MYO5CQ9NQX4 1742 aa19.03■□□□□ 0.64
SYNE1-236ENST00000537750 WWC1Q8IX03 1113 aa19.03■□□□□ 0.64
SYNE1-236ENST00000537750 GLIPR1L2Q4G1C9 344 aa19.02■□□□□ 0.64
SYNE1-236ENST00000537750 HSP90AA2PQ14568 343 aaPredicted RBP19.02■□□□□ 0.63
SYNE1-236ENST00000537750 RRP7AQ9Y3A4 280 aaKnown RBP19.02■□□□□ 0.63
SYNE1-236ENST00000537750 SYNJ2O15056 1496 aa19.01■□□□□ 0.63
SYNE1-236ENST00000537750 ARHGEF5Q12774 1597 aa19.01■□□□□ 0.63
SYNE1-236ENST00000537750 PMFBP1Q8TBY8 1022 aa19.01■□□□□ 0.63
SYNE1-236ENST00000537750 EIF2AK4Q9P2K8 1649 aaKnown RBP19.01■□□□□ 0.63
SYNE1-236ENST00000537750 HSP90AA1P07900 732 aaKnown RBP19■□□□□ 0.63
SYNE1-236ENST00000537750 NUP160Q12769 1436 aa19■□□□□ 0.63
SYNE1-236ENST00000537750 ZMYND15Q9H091 742 aa18.99■□□□□ 0.63
SYNE1-236ENST00000537750 ABCC2Q92887 1545 aa18.99■□□□□ 0.63
SYNE1-236ENST00000537750 RARSP54136 660 aaKnown RBP18.99■□□□□ 0.63
SYNE1-236ENST00000537750 CDCA8Q53HL2 280 aa18.99■□□□□ 0.63
SYNE1-236ENST00000537750 ABCA8O94911 1581 aa18.98■□□□□ 0.63
SYNE1-236ENST00000537750 MFAP1P55081 439 aaKnown RBP18.98■□□□□ 0.63
SYNE1-236ENST00000537750 RSPH4AQ5TD94 716 aa18.98■□□□□ 0.63
SYNE1-236ENST00000537750 CHMP5Q9NZZ3 219 aa18.98■□□□□ 0.63
SYNE1-236ENST00000537750 ERBB4Q15303 1308 aa18.96■□□□□ 0.63
SYNE1-236ENST00000537750 MRE11P49959 708 aa18.96■□□□□ 0.63
SYNE1-236ENST00000537750 C22orf23Q9BZE7 217 aa18.96■□□□□ 0.63
SYNE1-236ENST00000537750 SAMD9LQ8IVG5 1584 aa18.96■□□□□ 0.63
SYNE1-236ENST00000537750 NINLQ9Y2I6 1382 aa18.95■□□□□ 0.62
SYNE1-236ENST00000537750 MYH16Q9H6N6 1097 aa18.95■□□□□ 0.62
SYNE1-236ENST00000537750 GRPEL1Q9HAV7 217 aa18.95■□□□□ 0.62
SYNE1-236ENST00000537750 CARD14Q9BXL6 1004 aa18.95■□□□□ 0.62
SYNE1-236ENST00000537750 SYNMO15061 1565 aa18.94■□□□□ 0.62
SYNE1-236ENST00000537750 RWDD1Q9H446 243 aaPredicted RBP18.94■□□□□ 0.62
SYNE1-236ENST00000537750 RNF17Q9BXT8 1623 aaKnown RBP18.93■□□□□ 0.62
SYNE1-236ENST00000537750 ESPNB1AK53 854 aa18.93■□□□□ 0.62
SYNE1-236ENST00000537750 RRP9O43818 475 aaKnown RBP18.93■□□□□ 0.62
SYNE1-236ENST00000537750 TNNT2P45379 298 aaPredicted RBP18.93■□□□□ 0.62
SYNE1-236ENST00000537750 NPC1L1Q9UHC9 1359 aa18.92■□□□□ 0.62
SYNE1-236ENST00000537750 UNC13BO14795 1591 aa18.91■□□□□ 0.62
SYNE1-236ENST00000537750 SYCP2Q9BX26 1530 aa18.9■□□□□ 0.62
SYNE1-236ENST00000537750 NGEFQ8N5V2 710 aa18.9■□□□□ 0.62
SYNE1-236ENST00000537750 RTEL1-TNFRSF6BF6WH68 1400 aa18.9■□□□□ 0.62
SYNE1-236ENST00000537750 TCP11L2Q8N4U5 519 aa18.89■□□□□ 0.61
SYNE1-236ENST00000537750 SCAF11Q99590 1463 aaKnown RBP18.89■□□□□ 0.61
SYNE1-236ENST00000537750 ZNF692Q9BU19 519 aaPredicted RBP18.89■□□□□ 0.61
SYNE1-236ENST00000537750 ATP10AO60312 1499 aa18.88■□□□□ 0.61
SYNE1-236ENST00000537750 GAS2L3Q86XJ1 694 aa18.88■□□□□ 0.61
SYNE1-236ENST00000537750 IQGAP1P46940 1657 aa18.88■□□□□ 0.61
SYNE1-236ENST00000537750 MYOM1P52179 1685 aa18.88■□□□□ 0.61
SYNE1-236ENST00000537750 CDC42BPBQ9Y5S2 1711 aa18.88■□□□□ 0.61
SYNE1-236ENST00000537750 IQGAP3Q86VI3 1631 aa18.87■□□□□ 0.61
SYNE1-236ENST00000537750 HSCBQ8IWL3 235 aa18.87■□□□□ 0.61
SYNE1-236ENST00000537750 PLXNC1O60486 1568 aa18.86■□□□□ 0.61
SYNE1-236ENST00000537750 ZMYM3Q14202 1370 aa18.86■□□□□ 0.61
SYNE1-236ENST00000537750 DDX11L8A8MPP1 907 aa18.86■□□□□ 0.61
SYNE1-236ENST00000537750 AAMPQ13685 434 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms