RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 HDGFP51858 240 aaKnown RBP22.19■■□□□ 1.14
USP28-204ENST00000537642 PLEKHG1Q9ULL1 1385 aa22.19■■□□□ 1.14
USP28-204ENST00000537642 TRPM2O94759 1503 aa22.19■■□□□ 1.14
USP28-204ENST00000537642 CLTCL1P53675 1640 aa22.19■■□□□ 1.14
USP28-204ENST00000537642 SLC4A1APQ9BWU0 796 aaKnown RBP22.18■■□□□ 1.14
USP28-204ENST00000537642 PPP1R15AO75807 674 aaPredicted RBP22.17■■□□□ 1.14
USP28-204ENST00000537642 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.17■■□□□ 1.14
USP28-204ENST00000537642 SENP3Q9H4L4 574 aaPredicted RBP22.17■■□□□ 1.14
USP28-204ENST00000537642 NUTM2DQ5VT03 806 aaPredicted RBP22.16■■□□□ 1.14
USP28-204ENST00000537642 BCANQ96GW7 911 aa22.16■■□□□ 1.14
USP28-204ENST00000537642 XIRP1Q702N8 1843 aaKnown RBP22.13■■□□□ 1.13
USP28-204ENST00000537642 KCNA6P17658 529 aa22.13■■□□□ 1.13
USP28-204ENST00000537642 KIF1BO60333 1816 aa22.12■■□□□ 1.13
USP28-204ENST00000537642 ALKQ9UM73 1620 aa22.12■■□□□ 1.13
USP28-204ENST00000537642 SETD5Q9C0A6 1442 aa22.12■■□□□ 1.13
USP28-204ENST00000537642 TOM1O60784 492 aa22.11■■□□□ 1.13
USP28-204ENST00000537642 NWD1Q149M9 1564 aa22.11■■□□□ 1.13
USP28-204ENST00000537642 ADAMTS13Q76LX8 1427 aa22.1■■□□□ 1.13
USP28-204ENST00000537642 CHD2O14647 1828 aaKnown RBP22.09■■□□□ 1.13
USP28-204ENST00000537642 FOXD1Q16676 465 aa22.09■■□□□ 1.13
USP28-204ENST00000537642 ZNF326Q5BKZ1 582 aaKnown RBP22.09■■□□□ 1.13
USP28-204ENST00000537642 TBX22Q9Y458 520 aa22.09■■□□□ 1.13
USP28-204ENST00000537642 MPHOSPH9Q99550 1183 aa22.08■■□□□ 1.13
USP28-204ENST00000537642 PIP4K2BP78356 416 aa22.07■■□□□ 1.12
USP28-204ENST00000537642 DIP2AQ14689 1571 aa22.07■■□□□ 1.12
USP28-204ENST00000537642 NEXMIFQ5QGS0 1516 aa22.06■■□□□ 1.12
USP28-204ENST00000537642 NKTRP30414 1462 aaKnown RBP22.06■■□□□ 1.12
USP28-204ENST00000537642 TMEM94Q12767 1356 aa22.05■■□□□ 1.12
USP28-204ENST00000537642 NRXN3Q9Y4C0 1643 aa22.05■■□□□ 1.12
USP28-204ENST00000537642 SCAF1Q9H7N4 1312 aaKnown RBP22.05■■□□□ 1.12
USP28-204ENST00000537642 RAB3GAP2Q9H2M9 1393 aa22.04■■□□□ 1.12
USP28-204ENST00000537642 PROSER2Q86WR7 435 aaPredicted RBP22.04■■□□□ 1.12
USP28-204ENST00000537642 ACIN1Q9UKV3 1341 aaKnown RBP22.04■■□□□ 1.12
USP28-204ENST00000537642 SETBP1Q9Y6X0 1596 aa22.03■■□□□ 1.12
USP28-204ENST00000537642 RBM33Q96EV2 1170 aaKnown RBP22.02■■□□□ 1.12
USP28-204ENST00000537642 PIK3R4Q99570 1358 aa22■■□□□ 1.11
USP28-204ENST00000537642 CCDC144AA2RUR9 1427 aa21.97■■□□□ 1.11
USP28-204ENST00000537642 PTPRUQ92729 1446 aa21.97■■□□□ 1.11
USP28-204ENST00000537642 HSPA1LP34931 641 aa21.97■■□□□ 1.11
USP28-204ENST00000537642 RPGRIP1LQ68CZ1 1315 aa21.96■■□□□ 1.11
USP28-204ENST00000537642 PPLO60437 1756 aa21.96■■□□□ 1.11
USP28-204ENST00000537642 AMOTL2Q9Y2J4 779 aa21.94■■□□□ 1.1
USP28-204ENST00000537642 VGFO15240 615 aaPredicted RBP21.93■■□□□ 1.1
USP28-204ENST00000537642 METP08581 1390 aa21.93■■□□□ 1.1
USP28-204ENST00000537642 SPATA31E1Q6ZUB1 1445 aa21.93■■□□□ 1.1
USP28-204ENST00000537642 XRN1Q8IZH2 1706 aaKnown RBP21.92■■□□□ 1.1
USP28-204ENST00000537642 MSH6P52701 1360 aa21.91■■□□□ 1.1
USP28-204ENST00000537642 NCOA3Q9Y6Q9 1424 aa21.9■■□□□ 1.1
USP28-204ENST00000537642 SETD1AO15047 1707 aaKnown RBP21.9■■□□□ 1.1
USP28-204ENST00000537642 HRCP23327 699 aa21.9■■□□□ 1.1
USP28-204ENST00000537642 RGL3Q3MIN7 710 aa21.89■■□□□ 1.09
USP28-204ENST00000537642 IFT172Q9UG01 1749 aa21.88■■□□□ 1.09
USP28-204ENST00000537642 FAM135BQ49AJ0 1406 aa21.88■■□□□ 1.09
USP28-204ENST00000537642 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.85■■□□□ 1.09
USP28-204ENST00000537642 ROBO1Q9Y6N7 1651 aa21.85■■□□□ 1.09
USP28-204ENST00000537642 ADGRF5Q8IZF2 1346 aa21.84■■□□□ 1.09
USP28-204ENST00000537642 C14orf37Q86TY3 774 aa21.84■■□□□ 1.09
USP28-204ENST00000537642 ANKRD30BQ9BXX2 1392 aa21.83■■□□□ 1.08
USP28-204ENST00000537642 C19orf44Q9H6X5 657 aa21.82■■□□□ 1.08
USP28-204ENST00000537642 SLAIN2Q9P270 581 aa21.82■■□□□ 1.08
USP28-204ENST00000537642 DISP3Q9P2K9 1392 aa21.82■■□□□ 1.08
USP28-204ENST00000537642 CADPS2Q86UW7 1296 aa21.78■■□□□ 1.08
USP28-204ENST00000537642 ATF3P18847 181 aa21.77■■□□□ 1.08
USP28-204ENST00000537642 PTCH1Q13635 1447 aa21.77■■□□□ 1.08
USP28-204ENST00000537642 PRAG1Q86YV5 1406 aa21.77■■□□□ 1.08
USP28-204ENST00000537642 PIK3C2GO75747 1445 aa21.76■■□□□ 1.07
USP28-204ENST00000537642 DCCP43146 1447 aa21.76■■□□□ 1.07
USP28-204ENST00000537642 ROBO2Q9HCK4 1378 aa21.75■■□□□ 1.07
USP28-204ENST00000537642 NALCNQ8IZF0 1738 aa21.75■■□□□ 1.07
USP28-204ENST00000537642 MED1Q15648 1581 aaPredicted RBP21.74■■□□□ 1.07
USP28-204ENST00000537642 ADGRL3Q9HAR2 1447 aa21.74■■□□□ 1.07
USP28-204ENST00000537642 MYOM2P54296 1465 aa21.73■■□□□ 1.07
USP28-204ENST00000537642 NRXN1Q9ULB1 1477 aa21.73■■□□□ 1.07
USP28-204ENST00000537642 ASXL1Q8IXJ9 1541 aa21.73■■□□□ 1.07
USP28-204ENST00000537642 PHLPP1O60346 1717 aa21.71■■□□□ 1.07
USP28-204ENST00000537642 MST1RQ04912 1400 aa21.7■■□□□ 1.06
USP28-204ENST00000537642 TMEM132EQ6IEE7 984 aa21.69■■□□□ 1.06
USP28-204ENST00000537642 C14orf93Q9H972 538 aaKnown RBP21.68■■□□□ 1.06
USP28-204ENST00000537642 LRPPRCP42704 1394 aaKnown RBP21.68■■□□□ 1.06
USP28-204ENST00000537642 TECPR2O15040 1411 aa21.67■■□□□ 1.06
USP28-204ENST00000537642 KNDC1Q76NI1 1749 aa21.66■■□□□ 1.06
USP28-204ENST00000537642 ILDR2Q71H61 639 aa21.66■■□□□ 1.06
USP28-204ENST00000537642 BRINP3Q76B58 766 aa21.66■■□□□ 1.06
USP28-204ENST00000537642 STK26Q9P289 416 aa21.66■■□□□ 1.06
USP28-204ENST00000537642 LAMC1P11047 1609 aa21.66■■□□□ 1.06
USP28-204ENST00000537642 COL16A1Q07092 1604 aaPredicted RBP21.66■■□□□ 1.06
USP28-204ENST00000537642 AHDC1Q5TGY3 1603 aaPredicted RBP21.66■■□□□ 1.06
USP28-204ENST00000537642 ABCC11Q96J66 1382 aa21.65■■□□□ 1.06
USP28-204ENST00000537642 CFAP70Q5T0N1 1121 aa21.65■■□□□ 1.06
USP28-204ENST00000537642 YTHDC2Q9H6S0 1430 aaKnown RBP21.64■■□□□ 1.06
USP28-204ENST00000537642 WAPLQ7Z5K2 1190 aa21.62■■□□□ 1.05
USP28-204ENST00000537642 DCAF11Q8TEB1 546 aa21.62■■□□□ 1.05
USP28-204ENST00000537642 DHX57Q6P158 1386 aaKnown RBP21.61■■□□□ 1.05
USP28-204ENST00000537642 KDM2AQ9Y2K7 1162 aa21.61■■□□□ 1.05
USP28-204ENST00000537642 PLEKHH1Q9ULM0 1364 aa21.61■■□□□ 1.05
USP28-204ENST00000537642 C1orf167Q5SNV9 1468 aa21.6■■□□□ 1.05
USP28-204ENST00000537642 NHSL1Q5SYE7 1610 aa21.59■■□□□ 1.05
USP28-204ENST00000537642 JCADQ9P266 1359 aa21.59■■□□□ 1.05
USP28-204ENST00000537642 CDC42BPGQ6DT37 1551 aa21.58■■□□□ 1.05
USP28-204ENST00000537642 STAC3Q96MF2 364 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms