RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 WDR62O43379 1518 aa5.89□□□□□ -1.47
CHMP4A-208ENST00000534106 GFRA3O60609 400 aa5.89□□□□□ -1.47
CHMP4A-208ENST00000534106 LAPTM4AQ15012 233 aa5.89□□□□□ -1.47
CHMP4A-208ENST00000534106 TJAP1Q5JTD0 557 aa5.89□□□□□ -1.47
CHMP4A-208ENST00000534106 ARIH1Q9Y4X5 557 aaPredicted RBP5.89□□□□□ -1.47
CHMP4A-208ENST00000534106 C3orf80F5H4A9 247 aa5.88□□□□□ -1.47
CHMP4A-208ENST00000534106 PADI6Q6TGC4 694 aa5.88□□□□□ -1.47
CHMP4A-208ENST00000534106 PRKD2Q9BZL6 878 aa5.88□□□□□ -1.47
CHMP4A-208ENST00000534106 RTN4Q9NQC3 1192 aaKnown RBP5.88□□□□□ -1.47
CHMP4A-208ENST00000534106 RBM27Q9P2N5 1060 aaKnown RBP5.88□□□□□ -1.47
CHMP4A-208ENST00000534106 ARHGEF11O15085 1522 aa5.88□□□□□ -1.47
CHMP4A-208ENST00000534106 MROH2BQ7Z745 1585 aa5.88□□□□□ -1.47
CHMP4A-208ENST00000534106 SWT1Q5T5J6 900 aaKnown RBP5.87□□□□□ -1.47
CHMP4A-208ENST00000534106 PPP1R18Q6NYC8 613 aa5.87□□□□□ -1.47
CHMP4A-208ENST00000534106 SLF2Q8IX21 1173 aa5.87□□□□□ -1.47
CHMP4A-208ENST00000534106 ZNF608Q9ULD9 1512 aaPredicted RBP5.86□□□□□ -1.47
CHMP4A-208ENST00000534106 FANCD2Q9BXW9 1451 aa5.86□□□□□ -1.47
CHMP4A-208ENST00000534106 GGCXP38435 758 aa5.86□□□□□ -1.47
CHMP4A-208ENST00000534106 COPS2P61201 443 aa5.86□□□□□ -1.47
CHMP4A-208ENST00000534106 ZNF516Q92618 1163 aa5.86□□□□□ -1.47
CHMP4A-208ENST00000534106 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.86□□□□□ -1.47
CHMP4A-208ENST00000534106 APLP1P51693 650 aa5.85□□□□□ -1.47
CHMP4A-208ENST00000534106 URB2Q14146 1524 aaKnown RBP5.84□□□□□ -1.47
CHMP4A-208ENST00000534106 CEP164Q9UPV0 1460 aa5.84□□□□□ -1.47
CHMP4A-208ENST00000534106 TRAF7Q6Q0C0 670 aa5.84□□□□□ -1.47
CHMP4A-208ENST00000534106 ARAP1Q96P48 1450 aa5.83□□□□□ -1.48
CHMP4A-208ENST00000534106 NKX2-3Q8TAU0 364 aa5.83□□□□□ -1.48
CHMP4A-208ENST00000534106 PRR14Q9BWN1 585 aa5.83□□□□□ -1.48
CHMP4A-208ENST00000534106 NPDC1Q9NQX5 325 aaPredicted RBP5.82□□□□□ -1.48
CHMP4A-208ENST00000534106 PCDHB3Q9Y5E6 796 aa5.82□□□□□ -1.48
CHMP4A-208ENST00000534106 V9GY48 417 aaPredicted RBP5.82□□□□□ -1.48
CHMP4A-208ENST00000534106 PEG3Q9GZU2 1588 aa5.81□□□□□ -1.48
CHMP4A-208ENST00000534106 NRG2O14511 850 aaPredicted RBP5.81□□□□□ -1.48
CHMP4A-208ENST00000534106 MLLT3P42568 568 aaPredicted RBP5.81□□□□□ -1.48
CHMP4A-208ENST00000534106 ARHGEF1Q92888 912 aaKnown RBP5.81□□□□□ -1.48
CHMP4A-208ENST00000534106 AQRO60306 1485 aaKnown RBP eCLIP5.81□□□□□ -1.488e-12■■■■■ 36.3
CHMP4A-208ENST00000534106 NUTM2FA1L443 756 aa5.8□□□□□ -1.48
CHMP4A-208ENST00000534106 TTC13Q8NBP0 860 aa5.8□□□□□ -1.48
CHMP4A-208ENST00000534106 RBM46Q8TBY0 533 aaKnown RBP5.8□□□□□ -1.48
CHMP4A-208ENST00000534106 TSHZ2Q9NRE2 1034 aa5.8□□□□□ -1.48
CHMP4A-208ENST00000534106 ZPR1O75312 459 aa5.79□□□□□ -1.48
CHMP4A-208ENST00000534106 DNAJB2P25686 324 aa5.79□□□□□ -1.48
CHMP4A-208ENST00000534106 EYA1Q99502 592 aa5.79□□□□□ -1.48
CHMP4A-208ENST00000534106 PDZRN3Q9UPQ7 1066 aa5.79□□□□□ -1.48
CHMP4A-208ENST00000534106 CFTRP13569 1480 aa5.78□□□□□ -1.48
CHMP4A-208ENST00000534106 KMT5BQ4FZB7 885 aa5.78□□□□□ -1.48
CHMP4A-208ENST00000534106 KCNV2Q8TDN2 545 aa5.78□□□□□ -1.48
CHMP4A-208ENST00000534106 TMUB1Q9BVT8 246 aa5.78□□□□□ -1.48
CHMP4A-208ENST00000534106 PTGDRQ13258 359 aa5.77□□□□□ -1.49
CHMP4A-208ENST00000534106 BLOC1S3Q6QNY0 202 aa5.77□□□□□ -1.49
CHMP4A-208ENST00000534106 IFT140Q96RY7 1462 aa5.76□□□□□ -1.49
CHMP4A-208ENST00000534106 RCCD1A6NED2 376 aa5.75□□□□□ -1.49
CHMP4A-208ENST00000534106 FAM161AQ3B820 660 aa5.75□□□□□ -1.49
CHMP4A-208ENST00000534106 ZNF787Q6DD87 383 aa5.75□□□□□ -1.49
CHMP4A-208ENST00000534106 P3H3Q8IVL6 736 aa5.75□□□□□ -1.49
CHMP4A-208ENST00000534106 WIZO95785 1651 aa5.75□□□□□ -1.49
CHMP4A-208ENST00000534106 TLL1O43897 1013 aa5.74□□□□□ -1.49
CHMP4A-208ENST00000534106 FCHSD2O94868 740 aa5.74□□□□□ -1.49
CHMP4A-208ENST00000534106 CFHP08603 1231 aa5.74□□□□□ -1.49
CHMP4A-208ENST00000534106 SLC19A1P41440 591 aa5.74□□□□□ -1.49
CHMP4A-208ENST00000534106 CHMP7Q8WUX9 453 aaPredicted RBP5.74□□□□□ -1.49
CHMP4A-208ENST00000534106 TMEM134Q9H6X4 195 aa5.74□□□□□ -1.49
CHMP4A-208ENST00000534106 TDRD9Q8NDG6 1382 aaKnown RBP5.74□□□□□ -1.49
CHMP4A-208ENST00000534106 RNF223E7ERA6 249 aa5.73□□□□□ -1.49
CHMP4A-208ENST00000534106 PPEF1O14829 653 aaPredicted RBP5.73□□□□□ -1.49
CHMP4A-208ENST00000534106 ACTN4O43707 911 aaKnown RBP5.73□□□□□ -1.49
CHMP4A-208ENST00000534106 RSPH4AQ5TD94 716 aa5.73□□□□□ -1.49
CHMP4A-208ENST00000534106 ADGRG1Q9Y653 693 aa5.73□□□□□ -1.49
CHMP4A-208ENST00000534106 LCE2BO14633 110 aa5.72□□□□□ -1.49
CHMP4A-208ENST00000534106 NR1I2O75469 434 aa5.72□□□□□ -1.49
CHMP4A-208ENST00000534106 S1PR4O95977 384 aa5.72□□□□□ -1.49
CHMP4A-208ENST00000534106 PKDCCQ504Y2 493 aa5.72□□□□□ -1.49
CHMP4A-208ENST00000534106 RSF1Q96T23 1441 aaPredicted RBP5.72□□□□□ -1.49
CHMP4A-208ENST00000534106 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.71□□□□□ -1.5
CHMP4A-208ENST00000534106 SEMA3EO15041 775 aa5.71□□□□□ -1.5
CHMP4A-208ENST00000534106 OATP04181 439 aa5.71□□□□□ -1.5
CHMP4A-208ENST00000534106 RAD54L2Q9Y4B4 1467 aa5.71□□□□□ -1.5
CHMP4A-208ENST00000534106 TOPBP1Q92547 1522 aa5.7□□□□□ -1.5
CHMP4A-208ENST00000534106 SPRYD7Q5W111 196 aa5.7□□□□□ -1.5
CHMP4A-208ENST00000534106 ZNF598Q86UK7 904 aaKnown RBP5.7□□□□□ -1.5
CHMP4A-208ENST00000534106 ANKLE1Q8NAG6 615 aa5.7□□□□□ -1.5
CHMP4A-208ENST00000534106 SLC6A16Q9GZN6 736 aa5.7□□□□□ -1.5
CHMP4A-208ENST00000534106 ADH1BP00325 375 aa5.69□□□□□ -1.5
CHMP4A-208ENST00000534106 SLC10A3P09131 477 aa5.69□□□□□ -1.5
CHMP4A-208ENST00000534106 ZNF697Q5TEC3 545 aa5.69□□□□□ -1.5
CHMP4A-208ENST00000534106 SMYD5Q6GMV2 418 aa5.69□□□□□ -1.5
CHMP4A-208ENST00000534106 PUS10Q3MIT2 529 aaKnown RBP5.68□□□□□ -1.5
CHMP4A-208ENST00000534106 RDH13Q8NBN7 331 aa5.68□□□□□ -1.5
CHMP4A-208ENST00000534106 EIF4G3O43432 1585 aaKnown RBP5.67□□□□□ -1.5
CHMP4A-208ENST00000534106 FAM187AA6NFU0 413 aa5.67□□□□□ -1.5
CHMP4A-208ENST00000534106 TNFRSF10AO00220 468 aa5.67□□□□□ -1.5
CHMP4A-208ENST00000534106 HIC1Q14526 733 aa5.67□□□□□ -1.5
CHMP4A-208ENST00000534106 LIAT1Q6ZQX7 453 aa5.67□□□□□ -1.5
CHMP4A-208ENST00000534106 SCUBE3Q8IX30 993 aa5.67□□□□□ -1.5
CHMP4A-208ENST00000534106 PXYLP1Q8TE99 480 aa5.67□□□□□ -1.5
CHMP4A-208ENST00000534106 SOGA1O94964 1423 aa5.66□□□□□ -1.5
CHMP4A-208ENST00000534106 CCDC88BA6NC98 1476 aa5.66□□□□□ -1.5
CHMP4A-208ENST00000534106 GAPVD1Q14C86 1478 aa5.66□□□□□ -1.5
CHMP4A-208ENST00000534106 DGAT1O75907 488 aa5.66□□□□□ -1.5
CHMP4A-208ENST00000534106 FAM69CQ0P6D2 419 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms