RNA–Protein interactions for RNA: ENST00000533789.5

HIF3A-216, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-216ENST00000533789 PIP4K2BP78356 416 aa28.18■■■□□ 2.1
HIF3A-216ENST00000533789 NUP155O75694 1391 aa28.14■■■□□ 2.1
HIF3A-216ENST00000533789 RIMS2Q9UQ26 1411 aa28.12■■■□□ 2.09
HIF3A-216ENST00000533789 NKTRP30414 1462 aaKnown RBP28.11■■■□□ 2.09
HIF3A-216ENST00000533789 HSPA1LP34931 641 aa28.11■■■□□ 2.09
HIF3A-216ENST00000533789 PLEKHG1Q9ULL1 1385 aa28.1■■■□□ 2.09
HIF3A-216ENST00000533789 MED1Q15648 1581 aaPredicted RBP28.08■■■□□ 2.09
HIF3A-216ENST00000533789 DIP2AQ14689 1571 aa28.07■■■□□ 2.08
HIF3A-216ENST00000533789 SLC26A8Q96RN1 970 aa28.07■■■□□ 2.08
HIF3A-216ENST00000533789 KIF1BO60333 1816 aa28.05■■■□□ 2.08
HIF3A-216ENST00000533789 KCNA6P17658 529 aa28.05■■■□□ 2.08
HIF3A-216ENST00000533789 NAIPQ13075 1403 aa28.03■■■□□ 2.08
HIF3A-216ENST00000533789 TMEM94Q12767 1356 aa28.02■■■□□ 2.08
HIF3A-216ENST00000533789 PPP1R15AO75807 674 aaPredicted RBP28.02■■■□□ 2.08
HIF3A-216ENST00000533789 HDGFP51858 240 aaKnown RBP28.02■■■□□ 2.08
HIF3A-216ENST00000533789 ILDR2Q71H61 639 aa28.02■■■□□ 2.08
HIF3A-216ENST00000533789 CLTCL1P53675 1640 aa28■■■□□ 2.07
HIF3A-216ENST00000533789 CHGAP10645 457 aaKnown RBP28■■■□□ 2.07
HIF3A-216ENST00000533789 BCANQ96GW7 911 aa28■■■□□ 2.07
HIF3A-216ENST00000533789 ROBO1Q9Y6N7 1651 aa28■■■□□ 2.07
HIF3A-216ENST00000533789 TRPM2O94759 1503 aa27.98■■■□□ 2.07
HIF3A-216ENST00000533789 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.98■■■□□ 2.07
HIF3A-216ENST00000533789 NRXN3Q9Y4C0 1643 aa27.97■■■□□ 2.07
HIF3A-216ENST00000533789 HFM1A2PYH4 1435 aa27.96■■■□□ 2.07
HIF3A-216ENST00000533789 ADAMTS13Q76LX8 1427 aa27.96■■■□□ 2.07
HIF3A-216ENST00000533789 PROSER2Q86WR7 435 aaPredicted RBP27.94■■■□□ 2.06
HIF3A-216ENST00000533789 SENP3Q9H4L4 574 aaPredicted RBP27.94■■■□□ 2.06
HIF3A-216ENST00000533789 SETBP1Q9Y6X0 1596 aa27.92■■■□□ 2.06
HIF3A-216ENST00000533789 TBX22Q9Y458 520 aa27.91■■■□□ 2.06
HIF3A-216ENST00000533789 FAM135BQ49AJ0 1406 aa27.91■■■□□ 2.06
HIF3A-216ENST00000533789 PIK3R4Q99570 1358 aa27.89■■■□□ 2.06
HIF3A-216ENST00000533789 NUTM2DQ5VT03 806 aaPredicted RBP27.89■■■□□ 2.06
HIF3A-216ENST00000533789 XRN1Q8IZH2 1706 aaKnown RBP27.89■■■□□ 2.05
HIF3A-216ENST00000533789 MSH6P52701 1360 aa27.88■■■□□ 2.05
HIF3A-216ENST00000533789 NEXMIFQ5QGS0 1516 aa27.88■■■□□ 2.05
HIF3A-216ENST00000533789 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.88■■■□□ 2.05
HIF3A-216ENST00000533789 RBM33Q96EV2 1170 aaKnown RBP27.87■■■□□ 2.05
HIF3A-216ENST00000533789 PHLPP1O60346 1717 aa27.85■■■□□ 2.05
HIF3A-216ENST00000533789 NCOA3Q9Y6Q9 1424 aa27.84■■■□□ 2.05
HIF3A-216ENST00000533789 SOCS7O14512 581 aa27.83■■■□□ 2.05
HIF3A-216ENST00000533789 PPLO60437 1756 aa27.82■■■□□ 2.04
HIF3A-216ENST00000533789 SETD1AO15047 1707 aaKnown RBP27.81■■■□□ 2.04
HIF3A-216ENST00000533789 PTPRUQ92729 1446 aa27.78■■■□□ 2.04
HIF3A-216ENST00000533789 ZNF326Q5BKZ1 582 aaKnown RBP27.78■■■□□ 2.04
HIF3A-216ENST00000533789 TRIM52Q96A61 297 aa27.76■■■□□ 2.03
HIF3A-216ENST00000533789 COL16A1Q07092 1604 aaPredicted RBP27.73■■■□□ 2.03
HIF3A-216ENST00000533789 NALCNQ8IZF0 1738 aa27.72■■■□□ 2.03
HIF3A-216ENST00000533789 PHF23Q9BUL5 403 aaPredicted RBP27.71■■■□□ 2.03
HIF3A-216ENST00000533789 SLC4A1APQ9BWU0 796 aaKnown RBP27.71■■■□□ 2.03
HIF3A-216ENST00000533789 SLAIN2Q9P270 581 aa27.71■■■□□ 2.03
HIF3A-216ENST00000533789 IFT172Q9UG01 1749 aa27.7■■■□□ 2.03
HIF3A-216ENST00000533789 AMOTL2Q9Y2J4 779 aa27.7■■■□□ 2.02
HIF3A-216ENST00000533789 C14orf37Q86TY3 774 aa27.69■■■□□ 2.02
HIF3A-216ENST00000533789 AHDC1Q5TGY3 1603 aaPredicted RBP27.68■■■□□ 2.02
HIF3A-216ENST00000533789 DCCP43146 1447 aa27.67■■■□□ 2.02
HIF3A-216ENST00000533789 METP08581 1390 aa27.67■■■□□ 2.02
HIF3A-216ENST00000533789 C19orf44Q9H6X5 657 aa27.66■■■□□ 2.02
HIF3A-216ENST00000533789 CADPS2Q86UW7 1296 aa27.64■■■□□ 2.02
HIF3A-216ENST00000533789 SHPRHQ149N8 1683 aa27.64■■■□□ 2.02
HIF3A-216ENST00000533789 NHSL1Q5SYE7 1610 aa27.62■■■□□ 2.01
HIF3A-216ENST00000533789 ATF3P18847 181 aa27.61■■■□□ 2.01
HIF3A-216ENST00000533789 RPGRIP1LQ68CZ1 1315 aa27.59■■■□□ 2.01
HIF3A-216ENST00000533789 ADGRL3Q9HAR2 1447 aa27.58■■■□□ 2.01
HIF3A-216ENST00000533789 CCDC144AA2RUR9 1427 aa27.58■■■□□ 2
HIF3A-216ENST00000533789 VGFO15240 615 aaPredicted RBP27.57■■■□□ 2
HIF3A-216ENST00000533789 JCADQ9P266 1359 aa27.57■■■□□ 2
HIF3A-216ENST00000533789 PTCH1Q13635 1447 aa27.57■■■□□ 2
HIF3A-216ENST00000533789 PRAG1Q86YV5 1406 aa27.56■■■□□ 2
HIF3A-216ENST00000533789 ASXL1Q8IXJ9 1541 aa27.56■■■□□ 2
HIF3A-216ENST00000533789 FOXD1Q16676 465 aa27.55■■■□□ 2
HIF3A-216ENST00000533789 MST1RQ04912 1400 aa27.55■■■□□ 2
HIF3A-216ENST00000533789 SPATA31E1Q6ZUB1 1445 aa27.52■■■□□ 2
HIF3A-216ENST00000533789 KNDC1Q76NI1 1749 aa27.51■■□□□ 1.99
HIF3A-216ENST00000533789 MPHOSPH9Q99550 1183 aa27.51■■□□□ 1.99
HIF3A-216ENST00000533789 RGS17Q9UGC6 210 aaPredicted RBP27.51■■□□□ 1.99
HIF3A-216ENST00000533789 SETD5Q9C0A6 1442 aa27.5■■□□□ 1.99
HIF3A-216ENST00000533789 ACIN1Q9UKV3 1341 aaKnown RBP27.49■■□□□ 1.99
HIF3A-216ENST00000533789 BRINP3Q76B58 766 aa27.49■■□□□ 1.99
HIF3A-216ENST00000533789 LAMC1P11047 1609 aa27.48■■□□□ 1.99
HIF3A-216ENST00000533789 ROBO2Q9HCK4 1378 aa27.46■■□□□ 1.99
HIF3A-216ENST00000533789 LRP6O75581 1613 aa27.45■■□□□ 1.99
HIF3A-216ENST00000533789 SPATA31A6Q5VVP1 1343 aa27.43■■□□□ 1.98
HIF3A-216ENST00000533789 ANKRD30BQ9BXX2 1392 aa27.43■■□□□ 1.98
HIF3A-216ENST00000533789 CDC42BPGQ6DT37 1551 aa27.42■■□□□ 1.98
HIF3A-216ENST00000533789 ADGRF5Q8IZF2 1346 aa27.4■■□□□ 1.98
HIF3A-216ENST00000533789 RAB3GAP2Q9H2M9 1393 aa27.39■■□□□ 1.98
HIF3A-216ENST00000533789 PIK3C2GO75747 1445 aa27.39■■□□□ 1.97
HIF3A-216ENST00000533789 C1orf167Q5SNV9 1468 aa27.38■■□□□ 1.97
HIF3A-216ENST00000533789 RGL3Q3MIN7 710 aa27.38■■□□□ 1.97
HIF3A-216ENST00000533789 TECPR2O15040 1411 aa27.36■■□□□ 1.97
HIF3A-216ENST00000533789 POTEAQ6S8J7 498 aa27.35■■□□□ 1.97
HIF3A-216ENST00000533789 MYOM2P54296 1465 aa27.34■■□□□ 1.97
HIF3A-216ENST00000533789 NRXN1Q9ULB1 1477 aa27.32■■□□□ 1.96
HIF3A-216ENST00000533789 FMN2Q9NZ56 1722 aa27.32■■□□□ 1.96
HIF3A-216ENST00000533789 LRPPRCP42704 1394 aaKnown RBP27.3■■□□□ 1.96
HIF3A-216ENST00000533789 MEX3CQ5U5Q3 659 aaKnown RBP27.29■■□□□ 1.96
HIF3A-216ENST00000533789 RGPD8O14715 1765 aaPredicted RBP27.27■■□□□ 1.96
HIF3A-216ENST00000533789 LRRC59Q96AG4 307 aaKnown RBP27.27■■□□□ 1.96
HIF3A-216ENST00000533789 PNPLA6Q8IY17 1366 aa27.26■■□□□ 1.95
HIF3A-216ENST00000533789 DDX17Q92841 729 aaKnown RBP27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms