RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 FBXO41Q8TF61 875 aa22.34■■□□□ 1.17
CPSF1-208ENST00000532560 KIF1BO60333 1816 aa22.32■■□□□ 1.16
CPSF1-208ENST00000532560 CERKQ8TCT0 537 aa22.32■■□□□ 1.16
CPSF1-208ENST00000532560 HDGFP51858 240 aaKnown RBP22.31■■□□□ 1.16
CPSF1-208ENST00000532560 PLEKHG1Q9ULL1 1385 aa22.3■■□□□ 1.16
CPSF1-208ENST00000532560 FOXD1Q16676 465 aa22.3■■□□□ 1.16
CPSF1-208ENST00000532560 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.3■■□□□ 1.16
CPSF1-208ENST00000532560 CPS1P31327 1500 aa22.3■■□□□ 1.16
CPSF1-208ENST00000532560 IQSEC2Q5JU85 1478 aa22.29■■□□□ 1.16
CPSF1-208ENST00000532560 CCDC144AA2RUR9 1427 aa22.28■■□□□ 1.16
CPSF1-208ENST00000532560 PPP1R15AO75807 674 aaPredicted RBP22.27■■□□□ 1.16
CPSF1-208ENST00000532560 NEXMIFQ5QGS0 1516 aa22.26■■□□□ 1.15
CPSF1-208ENST00000532560 STRCP1A6NGW2 1772 aa22.24■■□□□ 1.15
CPSF1-208ENST00000532560 ZNF326Q5BKZ1 582 aaKnown RBP22.23■■□□□ 1.15
CPSF1-208ENST00000532560 DIP2AQ14689 1571 aa22.23■■□□□ 1.15
CPSF1-208ENST00000532560 SETBP1Q9Y6X0 1596 aa22.21■■□□□ 1.15
CPSF1-208ENST00000532560 SPATA31E1Q6ZUB1 1445 aa22.2■■□□□ 1.14
CPSF1-208ENST00000532560 ADAMTS13Q76LX8 1427 aa22.2■■□□□ 1.14
CPSF1-208ENST00000532560 NWD1Q149M9 1564 aa22.2■■□□□ 1.14
CPSF1-208ENST00000532560 NUTM2DQ5VT03 806 aaPredicted RBP22.19■■□□□ 1.14
CPSF1-208ENST00000532560 SLC26A8Q96RN1 970 aa22.19■■□□□ 1.14
CPSF1-208ENST00000532560 NRXN3Q9Y4C0 1643 aa22.18■■□□□ 1.14
CPSF1-208ENST00000532560 RPGRIP1LQ68CZ1 1315 aa22.18■■□□□ 1.14
CPSF1-208ENST00000532560 BCANQ96GW7 911 aa22.18■■□□□ 1.14
CPSF1-208ENST00000532560 PPLO60437 1756 aa22.17■■□□□ 1.14
CPSF1-208ENST00000532560 ANKRD30BQ9BXX2 1392 aa22.17■■□□□ 1.14
CPSF1-208ENST00000532560 TRIM26Q12899 539 aaPredicted RBP22.16■■□□□ 1.14
CPSF1-208ENST00000532560 LRRC7Q96NW7 1537 aa22.16■■□□□ 1.14
CPSF1-208ENST00000532560 TBX22Q9Y458 520 aa22.15■■□□□ 1.14
CPSF1-208ENST00000532560 NKTRP30414 1462 aaKnown RBP22.15■■□□□ 1.14
CPSF1-208ENST00000532560 KCNA6P17658 529 aa22.13■■□□□ 1.13
CPSF1-208ENST00000532560 IFT172Q9UG01 1749 aa22.13■■□□□ 1.13
CPSF1-208ENST00000532560 CHD2O14647 1828 aaKnown RBP22.13■■□□□ 1.13
CPSF1-208ENST00000532560 PIK3R4Q99570 1358 aa22.12■■□□□ 1.13
CPSF1-208ENST00000532560 SENP3Q9H4L4 574 aaPredicted RBP22.12■■□□□ 1.13
CPSF1-208ENST00000532560 VGFO15240 615 aaPredicted RBP22.11■■□□□ 1.13
CPSF1-208ENST00000532560 XIRP1Q702N8 1843 aaKnown RBP22.07■■□□□ 1.12
CPSF1-208ENST00000532560 SETD1AO15047 1707 aaKnown RBP22.06■■□□□ 1.12
CPSF1-208ENST00000532560 RGL3Q3MIN7 710 aa22.06■■□□□ 1.12
CPSF1-208ENST00000532560 XRN1Q8IZH2 1706 aaKnown RBP22.05■■□□□ 1.12
CPSF1-208ENST00000532560 ALKQ9UM73 1620 aa22.04■■□□□ 1.12
CPSF1-208ENST00000532560 PTPRUQ92729 1446 aa22.04■■□□□ 1.12
CPSF1-208ENST00000532560 MYOM2P54296 1465 aa22.03■■□□□ 1.12
CPSF1-208ENST00000532560 METP08581 1390 aa22.03■■□□□ 1.12
CPSF1-208ENST00000532560 TMEM94Q12767 1356 aa22.03■■□□□ 1.12
CPSF1-208ENST00000532560 PIK3C2GO75747 1445 aa22.01■■□□□ 1.11
CPSF1-208ENST00000532560 UBAP1LF5GYI3 381 aa22.01■■□□□ 1.11
CPSF1-208ENST00000532560 NRXN1Q9ULB1 1477 aa22.01■■□□□ 1.11
CPSF1-208ENST00000532560 ADGRF5Q8IZF2 1346 aa22.01■■□□□ 1.11
CPSF1-208ENST00000532560 PROSER2Q86WR7 435 aaPredicted RBP22■■□□□ 1.11
CPSF1-208ENST00000532560 NCOA3Q9Y6Q9 1424 aa21.98■■□□□ 1.11
CPSF1-208ENST00000532560 AMOTL2Q9Y2J4 779 aa21.98■■□□□ 1.11
CPSF1-208ENST00000532560 PRAG1Q86YV5 1406 aa21.97■■□□□ 1.11
CPSF1-208ENST00000532560 TOM1O60784 492 aa21.97■■□□□ 1.11
CPSF1-208ENST00000532560 DHX57Q6P158 1386 aaKnown RBP21.96■■□□□ 1.11
CPSF1-208ENST00000532560 LAMC1P11047 1609 aa21.95■■□□□ 1.1
CPSF1-208ENST00000532560 PTCH1Q13635 1447 aa21.94■■□□□ 1.1
CPSF1-208ENST00000532560 ASXL1Q8IXJ9 1541 aa21.92■■□□□ 1.1
CPSF1-208ENST00000532560 MSH6P52701 1360 aa21.92■■□□□ 1.1
CPSF1-208ENST00000532560 RBM33Q96EV2 1170 aaKnown RBP21.92■■□□□ 1.1
CPSF1-208ENST00000532560 STAC3Q96MF2 364 aa21.91■■□□□ 1.1
CPSF1-208ENST00000532560 TECPR2O15040 1411 aa21.88■■□□□ 1.09
CPSF1-208ENST00000532560 KNDC1Q76NI1 1749 aa21.87■■□□□ 1.09
CPSF1-208ENST00000532560 PIP4K2BP78356 416 aa21.87■■□□□ 1.09
CPSF1-208ENST00000532560 DCAF11Q8TEB1 546 aa21.87■■□□□ 1.09
CPSF1-208ENST00000532560 C14orf93Q9H972 538 aaKnown RBP21.87■■□□□ 1.09
CPSF1-208ENST00000532560 DCCP43146 1447 aa21.87■■□□□ 1.09
CPSF1-208ENST00000532560 ROBO2Q9HCK4 1378 aa21.87■■□□□ 1.09
CPSF1-208ENST00000532560 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.86■■□□□ 1.09
CPSF1-208ENST00000532560 LRPPRCP42704 1394 aaKnown RBP21.86■■□□□ 1.09
CPSF1-208ENST00000532560 SCAF1Q9H7N4 1312 aaKnown RBP21.85■■□□□ 1.09
CPSF1-208ENST00000532560 C14orf37Q86TY3 774 aa21.85■■□□□ 1.09
CPSF1-208ENST00000532560 ADGRL3Q9HAR2 1447 aa21.85■■□□□ 1.09
CPSF1-208ENST00000532560 C19orf44Q9H6X5 657 aa21.84■■□□□ 1.09
CPSF1-208ENST00000532560 NALCNQ8IZF0 1738 aa21.83■■□□□ 1.09
CPSF1-208ENST00000532560 YTHDC2Q9H6S0 1430 aaKnown RBP21.83■■□□□ 1.09
CPSF1-208ENST00000532560 ABCC11Q96J66 1382 aa21.83■■□□□ 1.08
CPSF1-208ENST00000532560 ADGRB1O14514 1584 aa21.82■■□□□ 1.08
CPSF1-208ENST00000532560 CFAP70Q5T0N1 1121 aa21.82■■□□□ 1.08
CPSF1-208ENST00000532560 KDM2AQ9Y2K7 1162 aa21.82■■□□□ 1.08
CPSF1-208ENST00000532560 FAM135BQ49AJ0 1406 aa21.81■■□□□ 1.08
CPSF1-208ENST00000532560 TMEM132EQ6IEE7 984 aa21.8■■□□□ 1.08
CPSF1-208ENST00000532560 CADPS2Q86UW7 1296 aa21.8■■□□□ 1.08
CPSF1-208ENST00000532560 SIN3AQ96ST3 1273 aa21.8■■□□□ 1.08
CPSF1-208ENST00000532560 ROBO1Q9Y6N7 1651 aa21.79■■□□□ 1.08
CPSF1-208ENST00000532560 ATF3P18847 181 aa21.78■■□□□ 1.08
CPSF1-208ENST00000532560 PCGF6Q9BYE7 350 aa21.77■■□□□ 1.08
CPSF1-208ENST00000532560 KIAA1210Q9ULL0 1709 aa21.77■■□□□ 1.08
CPSF1-208ENST00000532560 DLC1Q96QB1 1528 aa21.76■■□□□ 1.07
CPSF1-208ENST00000532560 SLAIN2Q9P270 581 aa21.76■■□□□ 1.07
CPSF1-208ENST00000532560 STK26Q9P289 416 aa21.76■■□□□ 1.07
CPSF1-208ENST00000532560 HSPA1LP34931 641 aa21.75■■□□□ 1.07
CPSF1-208ENST00000532560 CDC42BPGQ6DT37 1551 aa21.74■■□□□ 1.07
CPSF1-208ENST00000532560 MST1RQ04912 1400 aa21.74■■□□□ 1.07
CPSF1-208ENST00000532560 NEUROD1Q13562 356 aa21.74■■□□□ 1.07
CPSF1-208ENST00000532560 L3MBTL2Q969R5 705 aa21.74■■□□□ 1.07
CPSF1-208ENST00000532560 SIRT1Q96EB6 747 aa21.74■■□□□ 1.07
CPSF1-208ENST00000532560 PLEKHH1Q9ULM0 1364 aa21.72■■□□□ 1.07
CPSF1-208ENST00000532560 DISP3Q9P2K9 1392 aa21.71■■□□□ 1.07
CPSF1-208ENST00000532560 WAPLQ7Z5K2 1190 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms