RNA–Protein interactions for RNA: ENST00000531043.1

HIF3A-214, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-214ENST00000531043 NWD1Q149M9 1564 aa20.71■□□□□ 0.91
HIF3A-214ENST00000531043 SLC52A1Q9NWF4 448 aa20.7■□□□□ 0.9
HIF3A-214ENST00000531043 ZFYVE9O95405 1425 aa20.7■□□□□ 0.9
HIF3A-214ENST00000531043 BCANQ96GW7 911 aa20.69■□□□□ 0.9
HIF3A-214ENST00000531043 GCC2Q8IWJ2 1684 aa20.68■□□□□ 0.9
HIF3A-214ENST00000531043 NKTRP30414 1462 aaKnown RBP20.67■□□□□ 0.9
HIF3A-214ENST00000531043 RPRD2Q5VT52 1461 aaKnown RBP20.67■□□□□ 0.9
HIF3A-214ENST00000531043 POTEAQ6S8J7 498 aa20.66■□□□□ 0.9
HIF3A-214ENST00000531043 RIMS2Q9UQ26 1411 aa20.66■□□□□ 0.9
HIF3A-214ENST00000531043 TMEM131LA2VDJ0 1609 aa20.66■□□□□ 0.9
HIF3A-214ENST00000531043 CHD2O14647 1828 aaKnown RBP20.66■□□□□ 0.9
HIF3A-214ENST00000531043 PLEKHG1Q9ULL1 1385 aa20.64■□□□□ 0.89
HIF3A-214ENST00000531043 NUTM2DQ5VT03 806 aaPredicted RBP20.63■□□□□ 0.89
HIF3A-214ENST00000531043 MSH6P52701 1360 aa20.62■□□□□ 0.89
HIF3A-214ENST00000531043 E9PCH4 1651 aa20.61■□□□□ 0.89
HIF3A-214ENST00000531043 UNC13BO14795 1591 aa20.61■□□□□ 0.89
HIF3A-214ENST00000531043 SLAIN2Q9P270 581 aa20.61■□□□□ 0.89
HIF3A-214ENST00000531043 PPP1R15AO75807 674 aaPredicted RBP20.6■□□□□ 0.89
HIF3A-214ENST00000531043 CHGAP10645 457 aaKnown RBP20.6■□□□□ 0.89
HIF3A-214ENST00000531043 PHLPP1O60346 1717 aa20.6■□□□□ 0.89
HIF3A-214ENST00000531043 ADAMTS13Q76LX8 1427 aa20.58■□□□□ 0.88
HIF3A-214ENST00000531043 TBX22Q9Y458 520 aa20.57■□□□□ 0.88
HIF3A-214ENST00000531043 COL16A1Q07092 1604 aaPredicted RBP20.53■□□□□ 0.88
HIF3A-214ENST00000531043 IQGAP3Q86VI3 1631 aa20.53■□□□□ 0.88
HIF3A-214ENST00000531043 HDGFP51858 240 aaKnown RBP20.53■□□□□ 0.88
HIF3A-214ENST00000531043 ROCK1Q13464 1354 aa20.52■□□□□ 0.88
HIF3A-214ENST00000531043 JCADQ9P266 1359 aa20.52■□□□□ 0.88
HIF3A-214ENST00000531043 SETD1AO15047 1707 aaKnown RBP20.52■□□□□ 0.88
HIF3A-214ENST00000531043 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.52■□□□□ 0.88
HIF3A-214ENST00000531043 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.51■□□□□ 0.87
HIF3A-214ENST00000531043 PTPRUQ92729 1446 aa20.51■□□□□ 0.87
HIF3A-214ENST00000531043 ITGAEP38570 1179 aa20.5■□□□□ 0.87
HIF3A-214ENST00000531043 C14orf37Q86TY3 774 aa20.5■□□□□ 0.87
HIF3A-214ENST00000531043 NUP155O75694 1391 aa20.49■□□□□ 0.87
HIF3A-214ENST00000531043 PPARGC1BQ86YN6 1023 aaKnown RBP20.49■□□□□ 0.87
HIF3A-214ENST00000531043 LRP6O75581 1613 aa20.49■□□□□ 0.87
HIF3A-214ENST00000531043 NCOA3Q9Y6Q9 1424 aa20.48■□□□□ 0.87
HIF3A-214ENST00000531043 DIP2AQ14689 1571 aa20.47■□□□□ 0.87
HIF3A-214ENST00000531043 AMOTL2Q9Y2J4 779 aa20.46■□□□□ 0.87
HIF3A-214ENST00000531043 C19orf44Q9H6X5 657 aa20.45■□□□□ 0.86
HIF3A-214ENST00000531043 NRXN3Q9Y4C0 1643 aa20.45■□□□□ 0.86
HIF3A-214ENST00000531043 PIK3R4Q99570 1358 aa20.45■□□□□ 0.86
HIF3A-214ENST00000531043 CADPS2Q86UW7 1296 aa20.44■□□□□ 0.86
HIF3A-214ENST00000531043 TRPM2O94759 1503 aa20.43■□□□□ 0.86
HIF3A-214ENST00000531043 AHDC1Q5TGY3 1603 aaPredicted RBP20.43■□□□□ 0.86
HIF3A-214ENST00000531043 ATF3P18847 181 aa20.43■□□□□ 0.86
HIF3A-214ENST00000531043 BRINP3Q76B58 766 aa20.41■□□□□ 0.86
HIF3A-214ENST00000531043 SPHKAPQ2M3C7 1700 aa20.4■□□□□ 0.86
HIF3A-214ENST00000531043 XRN1Q8IZH2 1706 aaKnown RBP20.4■□□□□ 0.86
HIF3A-214ENST00000531043 SHPRHQ149N8 1683 aa20.39■□□□□ 0.86
HIF3A-214ENST00000531043 SPATA31A6Q5VVP1 1343 aa20.39■□□□□ 0.85
HIF3A-214ENST00000531043 METP08581 1390 aa20.38■□□□□ 0.85
HIF3A-214ENST00000531043 SETBP1Q9Y6X0 1596 aa20.38■□□□□ 0.85
HIF3A-214ENST00000531043 MEX3CQ5U5Q3 659 aaKnown RBP20.37■□□□□ 0.85
HIF3A-214ENST00000531043 ZNF326Q5BKZ1 582 aaKnown RBP20.35■□□□□ 0.85
HIF3A-214ENST00000531043 CLTCL1P53675 1640 aa20.35■□□□□ 0.85
HIF3A-214ENST00000531043 ASXL1Q8IXJ9 1541 aa20.34■□□□□ 0.85
HIF3A-214ENST00000531043 NUTM2BA6NNL0 878 aaPredicted RBP20.34■□□□□ 0.85
HIF3A-214ENST00000531043 NUTM2EB1AL46 878 aaPredicted RBP20.34■□□□□ 0.85
HIF3A-214ENST00000531043 NUTM2AQ8IVF1 878 aaPredicted RBP20.34■□□□□ 0.85
HIF3A-214ENST00000531043 DDX17Q92841 729 aaKnown RBP20.34■□□□□ 0.85
HIF3A-214ENST00000531043 TRIM52Q96A61 297 aa20.34■□□□□ 0.85
HIF3A-214ENST00000531043 MST1RQ04912 1400 aa20.34■□□□□ 0.85
HIF3A-214ENST00000531043 DCCP43146 1447 aa20.32■□□□□ 0.84
HIF3A-214ENST00000531043 NEXMIFQ5QGS0 1516 aa20.32■□□□□ 0.84
HIF3A-214ENST00000531043 ZNF772Q68DY9 489 aaPredicted RBP20.31■□□□□ 0.84
HIF3A-214ENST00000531043 NHSL1Q5SYE7 1610 aa20.3■□□□□ 0.84
HIF3A-214ENST00000531043 NALCNQ8IZF0 1738 aa20.29■□□□□ 0.84
HIF3A-214ENST00000531043 SETD5Q9C0A6 1442 aa20.28■□□□□ 0.84
HIF3A-214ENST00000531043 UPF1Q92900 1129 aaKnown RBP eCLIP20.28■□□□□ 0.84
HIF3A-214ENST00000531043 ADGRL3Q9HAR2 1447 aa20.27■□□□□ 0.83
HIF3A-214ENST00000531043 AFF2P51816 1311 aa20.26■□□□□ 0.83
HIF3A-214ENST00000531043 KIF1BO60333 1816 aa20.25■□□□□ 0.83
HIF3A-214ENST00000531043 RXRBP28702 533 aa20.25■□□□□ 0.83
HIF3A-214ENST00000531043 NAIPQ13075 1403 aa20.25■□□□□ 0.83
HIF3A-214ENST00000531043 PNPLA6Q8IY17 1366 aa20.22■□□□□ 0.83
HIF3A-214ENST00000531043 RRBP1Q9P2E9 1410 aaKnown RBP20.21■□□□□ 0.83
HIF3A-214ENST00000531043 LRRC59Q96AG4 307 aaKnown RBP20.21■□□□□ 0.83
HIF3A-214ENST00000531043 ROBO2Q9HCK4 1378 aa20.21■□□□□ 0.83
HIF3A-214ENST00000531043 C1orf167Q5SNV9 1468 aa20.2■□□□□ 0.82
HIF3A-214ENST00000531043 C8orf37Q96NL8 207 aa20.2■□□□□ 0.82
HIF3A-214ENST00000531043 ORAI2Q96SN7 254 aa20.18■□□□□ 0.82
HIF3A-214ENST00000531043 CDK12Q9NYV4 1490 aaPredicted RBP20.17■□□□□ 0.82
HIF3A-214ENST00000531043 ADAMTS2O95450 1211 aa20.16■□□□□ 0.82
HIF3A-214ENST00000531043 RGS12O14924 1447 aa20.16■□□□□ 0.82
HIF3A-214ENST00000531043 PTCH1Q13635 1447 aa20.16■□□□□ 0.82
HIF3A-214ENST00000531043 QTRT2Q9H974 415 aaKnown RBP20.15■□□□□ 0.82
HIF3A-214ENST00000531043 LAMC1P11047 1609 aa20.14■□□□□ 0.81
HIF3A-214ENST00000531043 PPLO60437 1756 aa20.13■□□□□ 0.81
HIF3A-214ENST00000531043 VGFO15240 615 aaPredicted RBP20.13■□□□□ 0.81
HIF3A-214ENST00000531043 SOS2Q07890 1332 aaPredicted RBP20.12■□□□□ 0.81
HIF3A-214ENST00000531043 FOXD1Q16676 465 aa20.12■□□□□ 0.81
HIF3A-214ENST00000531043 RBM6P78332 1123 aaKnown RBP20.11■□□□□ 0.81
HIF3A-214ENST00000531043 NGLY1Q96IV0 654 aa20.11■□□□□ 0.81
HIF3A-214ENST00000531043 SLC4A1APQ9BWU0 796 aaKnown RBP20.11■□□□□ 0.81
HIF3A-214ENST00000531043 HFM1A2PYH4 1435 aa20.1■□□□□ 0.81
HIF3A-214ENST00000531043 PRAG1Q86YV5 1406 aa20.1■□□□□ 0.81
HIF3A-214ENST00000531043 RPGRIP1LQ68CZ1 1315 aa20.08■□□□□ 0.81
HIF3A-214ENST00000531043 ADGRF5Q8IZF2 1346 aa20.07■□□□□ 0.8
HIF3A-214ENST00000531043 XPCQ01831 940 aaPredicted RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms