RNA–Protein interactions for RNA: ENST00000529542.1

HIF3A-213, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-213ENST00000529542 ROCK1Q13464 1354 aa22.03■■□□□ 1.12
HIF3A-213ENST00000529542 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.02■■□□□ 1.12
HIF3A-213ENST00000529542 PLEKHG1Q9ULL1 1385 aa22.01■■□□□ 1.11
HIF3A-213ENST00000529542 SENP3Q9H4L4 574 aaPredicted RBP22.01■■□□□ 1.11
HIF3A-213ENST00000529542 PPP1R15AO75807 674 aaPredicted RBP22■■□□□ 1.11
HIF3A-213ENST00000529542 ZFYVE9O95405 1425 aa21.99■■□□□ 1.11
HIF3A-213ENST00000529542 TBX22Q9Y458 520 aa21.98■■□□□ 1.11
HIF3A-213ENST00000529542 NWD1Q149M9 1564 aa21.98■■□□□ 1.11
HIF3A-213ENST00000529542 MSH6P52701 1360 aa21.98■■□□□ 1.11
HIF3A-213ENST00000529542 RIMS2Q9UQ26 1411 aa21.97■■□□□ 1.11
HIF3A-213ENST00000529542 UNC13BO14795 1591 aa21.97■■□□□ 1.11
HIF3A-213ENST00000529542 GCC2Q8IWJ2 1684 aa21.97■■□□□ 1.11
HIF3A-213ENST00000529542 NCOA3Q9Y6Q9 1424 aa21.95■■□□□ 1.1
HIF3A-213ENST00000529542 TMEM131LA2VDJ0 1609 aa21.94■■□□□ 1.1
HIF3A-213ENST00000529542 CHGAP10645 457 aaKnown RBP21.92■■□□□ 1.1
HIF3A-213ENST00000529542 SLAIN2Q9P270 581 aa21.92■■□□□ 1.1
HIF3A-213ENST00000529542 PIK3R4Q99570 1358 aa21.91■■□□□ 1.1
HIF3A-213ENST00000529542 NUP155O75694 1391 aa21.9■■□□□ 1.1
HIF3A-213ENST00000529542 RBM33Q96EV2 1170 aaKnown RBP21.9■■□□□ 1.1
HIF3A-213ENST00000529542 IQGAP3Q86VI3 1631 aa21.89■■□□□ 1.09
HIF3A-213ENST00000529542 CHD2O14647 1828 aaKnown RBP21.89■■□□□ 1.09
HIF3A-213ENST00000529542 ROBO1Q9Y6N7 1651 aa21.88■■□□□ 1.09
HIF3A-213ENST00000529542 E9PCH4 1651 aa21.88■■□□□ 1.09
HIF3A-213ENST00000529542 RGS17Q9UGC6 210 aaPredicted RBP21.87■■□□□ 1.09
HIF3A-213ENST00000529542 MYO5BQ9ULV0 1848 aa21.87■■□□□ 1.09
HIF3A-213ENST00000529542 DIP2AQ14689 1571 aa21.87■■□□□ 1.09
HIF3A-213ENST00000529542 ADAMTS13Q76LX8 1427 aa21.84■■□□□ 1.09
HIF3A-213ENST00000529542 CADPS2Q86UW7 1296 aa21.84■■□□□ 1.09
HIF3A-213ENST00000529542 C19orf44Q9H6X5 657 aa21.84■■□□□ 1.09
HIF3A-213ENST00000529542 ITGAEP38570 1179 aa21.82■■□□□ 1.08
HIF3A-213ENST00000529542 C14orf37Q86TY3 774 aa21.82■■□□□ 1.08
HIF3A-213ENST00000529542 JCADQ9P266 1359 aa21.82■■□□□ 1.08
HIF3A-213ENST00000529542 ATF3P18847 181 aa21.79■■□□□ 1.08
HIF3A-213ENST00000529542 NUTM2DQ5VT03 806 aaPredicted RBP21.79■■□□□ 1.08
HIF3A-213ENST00000529542 AMOTL2Q9Y2J4 779 aa21.78■■□□□ 1.08
HIF3A-213ENST00000529542 TRPM2O94759 1503 aa21.78■■□□□ 1.08
HIF3A-213ENST00000529542 PHLPP1O60346 1717 aa21.76■■□□□ 1.07
HIF3A-213ENST00000529542 POTEAQ6S8J7 498 aa21.75■■□□□ 1.07
HIF3A-213ENST00000529542 SPATA31A6Q5VVP1 1343 aa21.74■■□□□ 1.07
HIF3A-213ENST00000529542 DCCP43146 1447 aa21.73■■□□□ 1.07
HIF3A-213ENST00000529542 ZNF326Q5BKZ1 582 aaKnown RBP21.72■■□□□ 1.07
HIF3A-213ENST00000529542 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.71■■□□□ 1.07
HIF3A-213ENST00000529542 SETBP1Q9Y6X0 1596 aa21.7■■□□□ 1.06
HIF3A-213ENST00000529542 SPHKAPQ2M3C7 1700 aa21.7■■□□□ 1.06
HIF3A-213ENST00000529542 PTPRUQ92729 1446 aa21.7■■□□□ 1.06
HIF3A-213ENST00000529542 COL16A1Q07092 1604 aaPredicted RBP21.69■■□□□ 1.06
HIF3A-213ENST00000529542 PPARGC1BQ86YN6 1023 aaKnown RBP21.69■■□□□ 1.06
HIF3A-213ENST00000529542 AHDC1Q5TGY3 1603 aaPredicted RBP21.69■■□□□ 1.06
HIF3A-213ENST00000529542 RRBP1Q9P2E9 1410 aaKnown RBP21.68■■□□□ 1.06
HIF3A-213ENST00000529542 BRINP3Q76B58 766 aa21.66■■□□□ 1.06
HIF3A-213ENST00000529542 ZNF772Q68DY9 489 aaPredicted RBP21.65■■□□□ 1.06
HIF3A-213ENST00000529542 MEX3CQ5U5Q3 659 aaKnown RBP21.64■■□□□ 1.05
HIF3A-213ENST00000529542 NRXN3Q9Y4C0 1643 aa21.64■■□□□ 1.05
HIF3A-213ENST00000529542 NAIPQ13075 1403 aa21.63■■□□□ 1.05
HIF3A-213ENST00000529542 XRN1Q8IZH2 1706 aaKnown RBP21.63■■□□□ 1.05
HIF3A-213ENST00000529542 METP08581 1390 aa21.62■■□□□ 1.05
HIF3A-213ENST00000529542 VGFO15240 615 aaPredicted RBP21.62■■□□□ 1.05
HIF3A-213ENST00000529542 SHPRHQ149N8 1683 aa21.6■■□□□ 1.05
HIF3A-213ENST00000529542 RPGRIP1LQ68CZ1 1315 aa21.59■■□□□ 1.05
HIF3A-213ENST00000529542 NEXMIFQ5QGS0 1516 aa21.59■■□□□ 1.05
HIF3A-213ENST00000529542 CLTCL1P53675 1640 aa21.58■■□□□ 1.05
HIF3A-213ENST00000529542 MST1RQ04912 1400 aa21.58■■□□□ 1.05
HIF3A-213ENST00000529542 SETD5Q9C0A6 1442 aa21.58■■□□□ 1.05
HIF3A-213ENST00000529542 ADGRL3Q9HAR2 1447 aa21.58■■□□□ 1.05
HIF3A-213ENST00000529542 LRRC59Q96AG4 307 aaKnown RBP21.58■■□□□ 1.05
HIF3A-213ENST00000529542 LRP6O75581 1613 aa21.58■■□□□ 1.04
HIF3A-213ENST00000529542 HFM1A2PYH4 1435 aa21.57■■□□□ 1.04
HIF3A-213ENST00000529542 ASXL1Q8IXJ9 1541 aa21.57■■□□□ 1.04
HIF3A-213ENST00000529542 TRIM52Q96A61 297 aa21.57■■□□□ 1.04
HIF3A-213ENST00000529542 KIF1BO60333 1816 aa21.57■■□□□ 1.04
HIF3A-213ENST00000529542 SLC4A1APQ9BWU0 796 aaKnown RBP21.54■■□□□ 1.04
HIF3A-213ENST00000529542 PTCH1Q13635 1447 aa21.52■■□□□ 1.04
HIF3A-213ENST00000529542 RXRBP28702 533 aa21.51■■□□□ 1.03
HIF3A-213ENST00000529542 PRAG1Q86YV5 1406 aa21.5■■□□□ 1.03
HIF3A-213ENST00000529542 NUTM2BA6NNL0 878 aaPredicted RBP21.5■■□□□ 1.03
HIF3A-213ENST00000529542 NUTM2EB1AL46 878 aaPredicted RBP21.5■■□□□ 1.03
HIF3A-213ENST00000529542 NUTM2AQ8IVF1 878 aaPredicted RBP21.5■■□□□ 1.03
HIF3A-213ENST00000529542 NHSL1Q5SYE7 1610 aa21.5■■□□□ 1.03
HIF3A-213ENST00000529542 C1orf167Q5SNV9 1468 aa21.46■■□□□ 1.03
HIF3A-213ENST00000529542 CDK12Q9NYV4 1490 aaPredicted RBP21.46■■□□□ 1.03
HIF3A-213ENST00000529542 NALCNQ8IZF0 1738 aa21.45■■□□□ 1.02
HIF3A-213ENST00000529542 AFF2P51816 1311 aa21.45■■□□□ 1.02
HIF3A-213ENST00000529542 PNPLA6Q8IY17 1366 aa21.45■■□□□ 1.02
HIF3A-213ENST00000529542 ROBO2Q9HCK4 1378 aa21.45■■□□□ 1.02
HIF3A-213ENST00000529542 ACIN1Q9UKV3 1341 aaKnown RBP21.44■■□□□ 1.02
HIF3A-213ENST00000529542 SETD1AO15047 1707 aaKnown RBP21.42■■□□□ 1.02
HIF3A-213ENST00000529542 SOS2Q07890 1332 aaPredicted RBP21.42■■□□□ 1.02
HIF3A-213ENST00000529542 UPF1Q92900 1129 aaKnown RBP eCLIP21.42■■□□□ 1.02
HIF3A-213ENST00000529542 DDX17Q92841 729 aaKnown RBP21.41■■□□□ 1.02
HIF3A-213ENST00000529542 LAMC1P11047 1609 aa21.4■■□□□ 1.02
HIF3A-213ENST00000529542 CCDC144AA2RUR9 1427 aa21.39■■□□□ 1.02
HIF3A-213ENST00000529542 RBM6P78332 1123 aaKnown RBP21.39■■□□□ 1.01
HIF3A-213ENST00000529542 C8orf37Q96NL8 207 aa21.39■■□□□ 1.01
HIF3A-213ENST00000529542 ORAI2Q96SN7 254 aa21.39■■□□□ 1.01
HIF3A-213ENST00000529542 PPLO60437 1756 aa21.38■■□□□ 1.01
HIF3A-213ENST00000529542 ANKRD30BQ9BXX2 1392 aa21.38■■□□□ 1.01
HIF3A-213ENST00000529542 QTRT2Q9H974 415 aaKnown RBP21.38■■□□□ 1.01
HIF3A-213ENST00000529542 NGLY1Q96IV0 654 aa21.37■■□□□ 1.01
HIF3A-213ENST00000529542 MPHOSPH9Q99550 1183 aa21.35■■□□□ 1.01
HIF3A-213ENST00000529542 NPHP3Q7Z494 1330 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms