RNA–Protein interactions for RNA: ENST00000517647.1

TRIM55-205, Transcript of tripartite motif containing 55, humanhuman

TSL 2

Gene TRIM55, Length 865 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-205ENST00000517647 CPS1P31327 1500 aa16.48■□□□□ 0.23
TRIM55-205ENST00000517647 ZNF335Q9H4Z2 1342 aaPredicted RBP16.47■□□□□ 0.23
TRIM55-205ENST00000517647 HOXD11P31277 338 aaPredicted RBP16.47■□□□□ 0.23
TRIM55-205ENST00000517647 HDGFP51858 240 aaKnown RBP16.47■□□□□ 0.23
TRIM55-205ENST00000517647 PPP4R3CPQ6ZMV5 832 aa16.47■□□□□ 0.23
TRIM55-205ENST00000517647 ILDR1Q86SU0 546 aaPredicted RBP16.47■□□□□ 0.23
TRIM55-205ENST00000517647 SPHKAPQ2M3C7 1700 aa16.47■□□□□ 0.23
TRIM55-205ENST00000517647 HRCP23327 699 aa16.46■□□□□ 0.23
TRIM55-205ENST00000517647 SETD5Q9C0A6 1442 aa16.45■□□□□ 0.22
TRIM55-205ENST00000517647 TRPM2O94759 1503 aa16.45■□□□□ 0.22
TRIM55-205ENST00000517647 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.44■□□□□ 0.22
TRIM55-205ENST00000517647 PLEKHG1Q9ULL1 1385 aa16.42■□□□□ 0.22
TRIM55-205ENST00000517647 SLC4A1APQ9BWU0 796 aaKnown RBP16.42■□□□□ 0.22
TRIM55-205ENST00000517647 RIMS2Q9UQ26 1411 aa16.42■□□□□ 0.22
TRIM55-205ENST00000517647 TRIM52Q96A61 297 aa16.41■□□□□ 0.22
TRIM55-205ENST00000517647 RNF39Q9H2S5 420 aa16.4■□□□□ 0.22
TRIM55-205ENST00000517647 MYO5BQ9ULV0 1848 aa16.4■□□□□ 0.22
TRIM55-205ENST00000517647 MPHOSPH9Q99550 1183 aa16.38■□□□□ 0.21
TRIM55-205ENST00000517647 TBX22Q9Y458 520 aa16.37■□□□□ 0.21
TRIM55-205ENST00000517647 CLTCL1P53675 1640 aa16.37■□□□□ 0.21
TRIM55-205ENST00000517647 PIK3R4Q99570 1358 aa16.36■□□□□ 0.21
TRIM55-205ENST00000517647 RAB3GAP2Q9H2M9 1393 aa16.36■□□□□ 0.21
TRIM55-205ENST00000517647 DIP2AQ14689 1571 aa16.35■□□□□ 0.21
TRIM55-205ENST00000517647 KCNA6P17658 529 aa16.35■□□□□ 0.21
TRIM55-205ENST00000517647 LRRC7Q96NW7 1537 aa16.35■□□□□ 0.21
TRIM55-205ENST00000517647 STRCP1A6NGW2 1772 aa16.34■□□□□ 0.21
TRIM55-205ENST00000517647 RPGRIP1LQ68CZ1 1315 aa16.34■□□□□ 0.21
TRIM55-205ENST00000517647 NWD1Q149M9 1564 aa16.34■□□□□ 0.21
TRIM55-205ENST00000517647 KIF1BO60333 1816 aa16.33■□□□□ 0.21
TRIM55-205ENST00000517647 ADAMTS13Q76LX8 1427 aa16.33■□□□□ 0.2
TRIM55-205ENST00000517647 CHGAP10645 457 aaKnown RBP16.32■□□□□ 0.2
TRIM55-205ENST00000517647 NKTRP30414 1462 aaKnown RBP16.32■□□□□ 0.2
TRIM55-205ENST00000517647 SETBP1Q9Y6X0 1596 aa16.32■□□□□ 0.2
TRIM55-205ENST00000517647 NEXMIFQ5QGS0 1516 aa16.31■□□□□ 0.2
TRIM55-205ENST00000517647 PPP1R15AO75807 674 aaPredicted RBP16.31■□□□□ 0.2
TRIM55-205ENST00000517647 CNKSR2Q8WXI2 1034 aa16.31■□□□□ 0.2
TRIM55-205ENST00000517647 NCOA3Q9Y6Q9 1424 aa16.3■□□□□ 0.2
TRIM55-205ENST00000517647 SLC26A8Q96RN1 970 aa16.3■□□□□ 0.2
TRIM55-205ENST00000517647 CCDC144AA2RUR9 1427 aa16.29■□□□□ 0.2
TRIM55-205ENST00000517647 TRIM26Q12899 539 aaPredicted RBP16.29■□□□□ 0.2
TRIM55-205ENST00000517647 CHD2O14647 1828 aaKnown RBP16.29■□□□□ 0.2
TRIM55-205ENST00000517647 SPATA31E1Q6ZUB1 1445 aa16.28■□□□□ 0.2
TRIM55-205ENST00000517647 VGFO15240 615 aaPredicted RBP16.27■□□□□ 0.2
TRIM55-205ENST00000517647 TOM1O60784 492 aa16.27■□□□□ 0.2
TRIM55-205ENST00000517647 NRXN3Q9Y4C0 1643 aa16.27■□□□□ 0.19
TRIM55-205ENST00000517647 RNF216Q9NWF9 866 aaPredicted RBP16.26■□□□□ 0.19
TRIM55-205ENST00000517647 ZNF326Q5BKZ1 582 aaKnown RBP16.25■□□□□ 0.19
TRIM55-205ENST00000517647 ALKQ9UM73 1620 aa16.24■□□□□ 0.19
TRIM55-205ENST00000517647 UBAP1LF5GYI3 381 aa16.24■□□□□ 0.19
TRIM55-205ENST00000517647 PRAG1Q86YV5 1406 aa16.24■□□□□ 0.19
TRIM55-205ENST00000517647 ANKRD30BQ9BXX2 1392 aa16.24■□□□□ 0.19
TRIM55-205ENST00000517647 XIRP1Q702N8 1843 aaKnown RBP16.24■□□□□ 0.19
TRIM55-205ENST00000517647 TMEM94Q12767 1356 aa16.23■□□□□ 0.19
TRIM55-205ENST00000517647 PPLO60437 1756 aa16.23■□□□□ 0.19
TRIM55-205ENST00000517647 BCANQ96GW7 911 aa16.22■□□□□ 0.19
TRIM55-205ENST00000517647 NUTM2DQ5VT03 806 aaPredicted RBP16.2■□□□□ 0.18
TRIM55-205ENST00000517647 PROSER2Q86WR7 435 aaPredicted RBP16.2■□□□□ 0.18
TRIM55-205ENST00000517647 PCGF6Q9BYE7 350 aa16.2■□□□□ 0.18
TRIM55-205ENST00000517647 PTPRUQ92729 1446 aa16.19■□□□□ 0.18
TRIM55-205ENST00000517647 C1QBPQ07021 282 aaKnown RBP16.19■□□□□ 0.18
TRIM55-205ENST00000517647 STAC3Q96MF2 364 aa16.19■□□□□ 0.18
TRIM55-205ENST00000517647 XRN1Q8IZH2 1706 aaKnown RBP16.19■□□□□ 0.18
TRIM55-205ENST00000517647 IFT172Q9UG01 1749 aa16.18■□□□□ 0.18
TRIM55-205ENST00000517647 SETD1AO15047 1707 aaKnown RBP16.17■□□□□ 0.18
TRIM55-205ENST00000517647 METP08581 1390 aa16.17■□□□□ 0.18
TRIM55-205ENST00000517647 AMOTL2Q9Y2J4 779 aa16.17■□□□□ 0.18
TRIM55-205ENST00000517647 NRXN1Q9ULB1 1477 aa16.16■□□□□ 0.18
TRIM55-205ENST00000517647 FAM135BQ49AJ0 1406 aa16.16■□□□□ 0.18
TRIM55-205ENST00000517647 MYOM2P54296 1465 aa16.16■□□□□ 0.18
TRIM55-205ENST00000517647 MSH6P52701 1360 aa16.15■□□□□ 0.18
TRIM55-205ENST00000517647 DCCP43146 1447 aa16.15■□□□□ 0.18
TRIM55-205ENST00000517647 PIK3C2GO75747 1445 aa16.14■□□□□ 0.17
TRIM55-205ENST00000517647 PTCH1Q13635 1447 aa16.14■□□□□ 0.17
TRIM55-205ENST00000517647 C19orf44Q9H6X5 657 aa16.13■□□□□ 0.17
TRIM55-205ENST00000517647 ADGRF5Q8IZF2 1346 aa16.13■□□□□ 0.17
TRIM55-205ENST00000517647 TECPR2O15040 1411 aa16.11■□□□□ 0.17
TRIM55-205ENST00000517647 RGL3Q3MIN7 710 aa16.11■□□□□ 0.17
TRIM55-205ENST00000517647 CADPS2Q86UW7 1296 aa16.1■□□□□ 0.17
TRIM55-205ENST00000517647 C14orf93Q9H972 538 aaKnown RBP16.09■□□□□ 0.17
TRIM55-205ENST00000517647 ABCC11Q96J66 1382 aa16.09■□□□□ 0.17
TRIM55-205ENST00000517647 PIP4K2BP78356 416 aa16.08■□□□□ 0.16
TRIM55-205ENST00000517647 SIRT1Q96EB6 747 aa16.08■□□□□ 0.16
TRIM55-205ENST00000517647 SLAIN2Q9P270 581 aa16.07■□□□□ 0.16
TRIM55-205ENST00000517647 LRPPRCP42704 1394 aaKnown RBP16.07■□□□□ 0.16
TRIM55-205ENST00000517647 ADGRL3Q9HAR2 1447 aa16.07■□□□□ 0.16
TRIM55-205ENST00000517647 LAMC1P11047 1609 aa16.07■□□□□ 0.16
TRIM55-205ENST00000517647 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.07■□□□□ 0.16
TRIM55-205ENST00000517647 HSPA1LP34931 641 aa16.06■□□□□ 0.16
TRIM55-205ENST00000517647 RBM33Q96EV2 1170 aaKnown RBP16.05■□□□□ 0.16
TRIM55-205ENST00000517647 ASXL1Q8IXJ9 1541 aa16.04■□□□□ 0.16
TRIM55-205ENST00000517647 DHX57Q6P158 1386 aaKnown RBP16.04■□□□□ 0.16
TRIM55-205ENST00000517647 ROBO2Q9HCK4 1378 aa16.04■□□□□ 0.16
TRIM55-205ENST00000517647 KNDC1Q76NI1 1749 aa16.04■□□□□ 0.16
TRIM55-205ENST00000517647 ATF3P18847 181 aa16.03■□□□□ 0.16
TRIM55-205ENST00000517647 ROBO1Q9Y6N7 1651 aa16.02■□□□□ 0.15
TRIM55-205ENST00000517647 ZEB1P37275 1124 aaPredicted RBP16.01■□□□□ 0.15
TRIM55-205ENST00000517647 YTHDC2Q9H6S0 1430 aaKnown RBP16.01■□□□□ 0.15
TRIM55-205ENST00000517647 C14orf37Q86TY3 774 aa16■□□□□ 0.15
TRIM55-205ENST00000517647 MST1RQ04912 1400 aa16■□□□□ 0.15
TRIM55-205ENST00000517647 ADGRB1O14514 1584 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms