RNA–Protein interactions for RNA: ENST00000515233.5

DDR1-278, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-278ENST00000515233 NWD1Q149M9 1564 aa23.2■■□□□ 1.3
DDR1-278ENST00000515233 NKTRP30414 1462 aaKnown RBP23.2■■□□□ 1.3
DDR1-278ENST00000515233 PLEKHG1Q9ULL1 1385 aa23.19■■□□□ 1.3
DDR1-278ENST00000515233 BCANQ96GW7 911 aa23.19■■□□□ 1.3
DDR1-278ENST00000515233 GCC2Q8IWJ2 1684 aa23.19■■□□□ 1.3
DDR1-278ENST00000515233 UNC13BO14795 1591 aa23.18■■□□□ 1.3
DDR1-278ENST00000515233 MYO5BQ9ULV0 1848 aa23.17■■□□□ 1.3
DDR1-278ENST00000515233 ROCK1Q13464 1354 aa23.17■■□□□ 1.3
DDR1-278ENST00000515233 RBM33Q96EV2 1170 aaKnown RBP23.17■■□□□ 1.3
DDR1-278ENST00000515233 TMEM131LA2VDJ0 1609 aa23.17■■□□□ 1.3
DDR1-278ENST00000515233 RIMS2Q9UQ26 1411 aa23.16■■□□□ 1.3
DDR1-278ENST00000515233 RGS17Q9UGC6 210 aaPredicted RBP23.16■■□□□ 1.3
DDR1-278ENST00000515233 TBX22Q9Y458 520 aa23.15■■□□□ 1.3
DDR1-278ENST00000515233 CHD2O14647 1828 aaKnown RBP23.15■■□□□ 1.3
DDR1-278ENST00000515233 ROBO1Q9Y6N7 1651 aa23.14■■□□□ 1.29
DDR1-278ENST00000515233 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.14■■□□□ 1.29
DDR1-278ENST00000515233 MSH6P52701 1360 aa23.14■■□□□ 1.29
DDR1-278ENST00000515233 PPP1R15AO75807 674 aaPredicted RBP23.13■■□□□ 1.29
DDR1-278ENST00000515233 E9PCH4 1651 aa23.12■■□□□ 1.29
DDR1-278ENST00000515233 SLAIN2Q9P270 581 aa23.11■■□□□ 1.29
DDR1-278ENST00000515233 IQGAP3Q86VI3 1631 aa23.1■■□□□ 1.29
DDR1-278ENST00000515233 NCOA3Q9Y6Q9 1424 aa23.09■■□□□ 1.29
DDR1-278ENST00000515233 CHGAP10645 457 aaKnown RBP23.09■■□□□ 1.29
DDR1-278ENST00000515233 NUP155O75694 1391 aa23.06■■□□□ 1.28
DDR1-278ENST00000515233 ADAMTS13Q76LX8 1427 aa23.06■■□□□ 1.28
DDR1-278ENST00000515233 PIK3R4Q99570 1358 aa23.05■■□□□ 1.28
DDR1-278ENST00000515233 DIP2AQ14689 1571 aa23.02■■□□□ 1.28
DDR1-278ENST00000515233 NUTM2DQ5VT03 806 aaPredicted RBP23.02■■□□□ 1.28
DDR1-278ENST00000515233 PHLPP1O60346 1717 aa23■■□□□ 1.27
DDR1-278ENST00000515233 ITGAEP38570 1179 aa23■■□□□ 1.27
DDR1-278ENST00000515233 C19orf44Q9H6X5 657 aa23■■□□□ 1.27
DDR1-278ENST00000515233 POTEAQ6S8J7 498 aa22.99■■□□□ 1.27
DDR1-278ENST00000515233 JCADQ9P266 1359 aa22.99■■□□□ 1.27
DDR1-278ENST00000515233 CADPS2Q86UW7 1296 aa22.98■■□□□ 1.27
DDR1-278ENST00000515233 C14orf37Q86TY3 774 aa22.96■■□□□ 1.27
DDR1-278ENST00000515233 AMOTL2Q9Y2J4 779 aa22.96■■□□□ 1.27
DDR1-278ENST00000515233 TRPM2O94759 1503 aa22.95■■□□□ 1.26
DDR1-278ENST00000515233 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.95■■□□□ 1.26
DDR1-278ENST00000515233 COL16A1Q07092 1604 aaPredicted RBP22.93■■□□□ 1.26
DDR1-278ENST00000515233 PTPRUQ92729 1446 aa22.93■■□□□ 1.26
DDR1-278ENST00000515233 ATF3P18847 181 aa22.93■■□□□ 1.26
DDR1-278ENST00000515233 PPARGC1BQ86YN6 1023 aaKnown RBP22.92■■□□□ 1.26
DDR1-278ENST00000515233 SPHKAPQ2M3C7 1700 aa22.91■■□□□ 1.26
DDR1-278ENST00000515233 SPATA31A6Q5VVP1 1343 aa22.89■■□□□ 1.26
DDR1-278ENST00000515233 SETBP1Q9Y6X0 1596 aa22.89■■□□□ 1.25
DDR1-278ENST00000515233 AHDC1Q5TGY3 1603 aaPredicted RBP22.88■■□□□ 1.25
DDR1-278ENST00000515233 NRXN3Q9Y4C0 1643 aa22.88■■□□□ 1.25
DDR1-278ENST00000515233 ZNF326Q5BKZ1 582 aaKnown RBP22.87■■□□□ 1.25
DDR1-278ENST00000515233 DCCP43146 1447 aa22.87■■□□□ 1.25
DDR1-278ENST00000515233 BRINP3Q76B58 766 aa22.85■■□□□ 1.25
DDR1-278ENST00000515233 XRN1Q8IZH2 1706 aaKnown RBP22.85■■□□□ 1.25
DDR1-278ENST00000515233 RRBP1Q9P2E9 1410 aaKnown RBP22.83■■□□□ 1.25
DDR1-278ENST00000515233 SHPRHQ149N8 1683 aa22.82■■□□□ 1.24
DDR1-278ENST00000515233 METP08581 1390 aa22.82■■□□□ 1.24
DDR1-278ENST00000515233 LRP6O75581 1613 aa22.82■■□□□ 1.24
DDR1-278ENST00000515233 NAIPQ13075 1403 aa22.81■■□□□ 1.24
DDR1-278ENST00000515233 CLTCL1P53675 1640 aa22.79■■□□□ 1.24
DDR1-278ENST00000515233 NEXMIFQ5QGS0 1516 aa22.79■■□□□ 1.24
DDR1-278ENST00000515233 ZNF772Q68DY9 489 aaPredicted RBP22.79■■□□□ 1.24
DDR1-278ENST00000515233 MST1RQ04912 1400 aa22.78■■□□□ 1.24
DDR1-278ENST00000515233 MEX3CQ5U5Q3 659 aaKnown RBP22.78■■□□□ 1.24
DDR1-278ENST00000515233 KIF1BO60333 1816 aa22.77■■□□□ 1.24
DDR1-278ENST00000515233 ASXL1Q8IXJ9 1541 aa22.76■■□□□ 1.23
DDR1-278ENST00000515233 SETD5Q9C0A6 1442 aa22.75■■□□□ 1.23
DDR1-278ENST00000515233 ADGRL3Q9HAR2 1447 aa22.74■■□□□ 1.23
DDR1-278ENST00000515233 VGFO15240 615 aaPredicted RBP22.73■■□□□ 1.23
DDR1-278ENST00000515233 LRRC59Q96AG4 307 aaKnown RBP22.73■■□□□ 1.23
DDR1-278ENST00000515233 NHSL1Q5SYE7 1610 aa22.72■■□□□ 1.23
DDR1-278ENST00000515233 SETD1AO15047 1707 aaKnown RBP22.71■■□□□ 1.23
DDR1-278ENST00000515233 TRIM52Q96A61 297 aa22.7■■□□□ 1.22
DDR1-278ENST00000515233 RPGRIP1LQ68CZ1 1315 aa22.7■■□□□ 1.22
DDR1-278ENST00000515233 HFM1A2PYH4 1435 aa22.7■■□□□ 1.22
DDR1-278ENST00000515233 NALCNQ8IZF0 1738 aa22.68■■□□□ 1.22
DDR1-278ENST00000515233 NUTM2BA6NNL0 878 aaPredicted RBP22.68■■□□□ 1.22
DDR1-278ENST00000515233 NUTM2EB1AL46 878 aaPredicted RBP22.68■■□□□ 1.22
DDR1-278ENST00000515233 NUTM2AQ8IVF1 878 aaPredicted RBP22.68■■□□□ 1.22
DDR1-278ENST00000515233 SLC4A1APQ9BWU0 796 aaKnown RBP22.67■■□□□ 1.22
DDR1-278ENST00000515233 RXRBP28702 533 aa22.66■■□□□ 1.22
DDR1-278ENST00000515233 PTCH1Q13635 1447 aa22.65■■□□□ 1.22
DDR1-278ENST00000515233 C1orf167Q5SNV9 1468 aa22.65■■□□□ 1.22
DDR1-278ENST00000515233 PRAG1Q86YV5 1406 aa22.65■■□□□ 1.22
DDR1-278ENST00000515233 DDX17Q92841 729 aaKnown RBP22.64■■□□□ 1.21
DDR1-278ENST00000515233 PNPLA6Q8IY17 1366 aa22.63■■□□□ 1.21
DDR1-278ENST00000515233 ROBO2Q9HCK4 1378 aa22.63■■□□□ 1.21
DDR1-278ENST00000515233 AFF2P51816 1311 aa22.62■■□□□ 1.21
DDR1-278ENST00000515233 UPF1Q92900 1129 aaKnown RBP eCLIP22.62■■□□□ 1.21
DDR1-278ENST00000515233 CDK12Q9NYV4 1490 aaPredicted RBP22.61■■□□□ 1.21
DDR1-278ENST00000515233 PPLO60437 1756 aa22.61■■□□□ 1.21
DDR1-278ENST00000515233 LAMC1P11047 1609 aa22.6■■□□□ 1.21
DDR1-278ENST00000515233 SOS2Q07890 1332 aaPredicted RBP22.58■■□□□ 1.21
DDR1-278ENST00000515233 ORAI2Q96SN7 254 aa22.58■■□□□ 1.21
DDR1-278ENST00000515233 C8orf37Q96NL8 207 aa22.56■■□□□ 1.2
DDR1-278ENST00000515233 QTRT2Q9H974 415 aaKnown RBP22.55■■□□□ 1.2
DDR1-278ENST00000515233 RBM6P78332 1123 aaKnown RBP22.53■■□□□ 1.2
DDR1-278ENST00000515233 FOXD1Q16676 465 aa22.53■■□□□ 1.2
DDR1-278ENST00000515233 NGLY1Q96IV0 654 aa22.51■■□□□ 1.19
DDR1-278ENST00000515233 ADGRF5Q8IZF2 1346 aa22.51■■□□□ 1.19
DDR1-278ENST00000515233 CCDC144AA2RUR9 1427 aa22.5■■□□□ 1.19
DDR1-278ENST00000515233 ADAMTS2O95450 1211 aa22.49■■□□□ 1.19
DDR1-278ENST00000515233 MPHOSPH9Q99550 1183 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms