RNA–Protein interactions for RNA: ENST00000513996.5

HERC4-214, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 944 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-214ENST00000513996 IQSEC2Q5JU85 1478 aa13.19□□□□□ -0.3
HERC4-214ENST00000513996 GCC2Q8IWJ2 1684 aa13.18□□□□□ -0.3
HERC4-214ENST00000513996 UBAP1LF5GYI3 381 aa13.18□□□□□ -0.3
HERC4-214ENST00000513996 CHGAP10645 457 aaKnown RBP13.18□□□□□ -0.3
HERC4-214ENST00000513996 HFM1A2PYH4 1435 aa13.17□□□□□ -0.3
HERC4-214ENST00000513996 DCAF8L1A6NGE4 600 aa13.17□□□□□ -0.3
HERC4-214ENST00000513996 TRIM52Q96A61 297 aa13.17□□□□□ -0.3
HERC4-214ENST00000513996 SLC26A8Q96RN1 970 aa13.17□□□□□ -0.3
HERC4-214ENST00000513996 ADGRB3O60242 1522 aa13.17□□□□□ -0.3
HERC4-214ENST00000513996 KDM5AP29375 1690 aaKnown RBP13.16□□□□□ -0.3
HERC4-214ENST00000513996 NUTM2DQ5VT03 806 aaPredicted RBP13.16□□□□□ -0.3
HERC4-214ENST00000513996 STRCP1A6NGW2 1772 aa13.16□□□□□ -0.3
HERC4-214ENST00000513996 ZFYVE9O95405 1425 aa13.15□□□□□ -0.3
HERC4-214ENST00000513996 CPS1P31327 1500 aa13.15□□□□□ -0.3
HERC4-214ENST00000513996 TMEM131LA2VDJ0 1609 aa13.15□□□□□ -0.3
HERC4-214ENST00000513996 RIMS2Q9UQ26 1411 aa13.14□□□□□ -0.31
HERC4-214ENST00000513996 MYO5BQ9ULV0 1848 aa13.13□□□□□ -0.31
HERC4-214ENST00000513996 LRRC7Q96NW7 1537 aa13.13□□□□□ -0.31
HERC4-214ENST00000513996 KCNA6P17658 529 aa13.11□□□□□ -0.31
HERC4-214ENST00000513996 HDGFP51858 240 aaKnown RBP13.11□□□□□ -0.31
HERC4-214ENST00000513996 BCANQ96GW7 911 aa13.11□□□□□ -0.31
HERC4-214ENST00000513996 PLEKHG1Q9ULL1 1385 aa13.1□□□□□ -0.31
HERC4-214ENST00000513996 TOM1O60784 492 aa13.1□□□□□ -0.31
HERC4-214ENST00000513996 PPP1R15AO75807 674 aaPredicted RBP13.1□□□□□ -0.31
HERC4-214ENST00000513996 PIP4K2BP78356 416 aa13.1□□□□□ -0.31
HERC4-214ENST00000513996 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.1□□□□□ -0.31
HERC4-214ENST00000513996 RBM33Q96EV2 1170 aaKnown RBP13.1□□□□□ -0.31
HERC4-214ENST00000513996 TBX22Q9Y458 520 aa13.09□□□□□ -0.31
HERC4-214ENST00000513996 ALKQ9UM73 1620 aa13.09□□□□□ -0.31
HERC4-214ENST00000513996 ADAMTS13Q76LX8 1427 aa13.07□□□□□ -0.32
HERC4-214ENST00000513996 PROSER2Q86WR7 435 aaPredicted RBP13.07□□□□□ -0.32
HERC4-214ENST00000513996 MPHOSPH9Q99550 1183 aa13.07□□□□□ -0.32
HERC4-214ENST00000513996 SPHKAPQ2M3C7 1700 aa13.06□□□□□ -0.32
HERC4-214ENST00000513996 HSPA1LP34931 641 aa13.06□□□□□ -0.32
HERC4-214ENST00000513996 ZNF326Q5BKZ1 582 aaKnown RBP13.06□□□□□ -0.32
HERC4-214ENST00000513996 TMEM94Q12767 1356 aa13.06□□□□□ -0.32
HERC4-214ENST00000513996 CLTCL1P53675 1640 aa13.05□□□□□ -0.32
HERC4-214ENST00000513996 SETD5Q9C0A6 1442 aa13.05□□□□□ -0.32
HERC4-214ENST00000513996 TRPM2O94759 1503 aa13.04□□□□□ -0.32
HERC4-214ENST00000513996 XIRP1Q702N8 1843 aaKnown RBP13.03□□□□□ -0.32
HERC4-214ENST00000513996 PTPRUQ92729 1446 aa13.02□□□□□ -0.33
HERC4-214ENST00000513996 NWD1Q149M9 1564 aa13□□□□□ -0.33
HERC4-214ENST00000513996 RAB3GAP2Q9H2M9 1393 aa13□□□□□ -0.33
HERC4-214ENST00000513996 AMOTL2Q9Y2J4 779 aa13□□□□□ -0.33
HERC4-214ENST00000513996 CHD2O14647 1828 aaKnown RBP12.99□□□□□ -0.33
HERC4-214ENST00000513996 METP08581 1390 aa12.99□□□□□ -0.33
HERC4-214ENST00000513996 NEXMIFQ5QGS0 1516 aa12.98□□□□□ -0.33
HERC4-214ENST00000513996 NKTRP30414 1462 aaKnown RBP12.98□□□□□ -0.33
HERC4-214ENST00000513996 PIK3R4Q99570 1358 aa12.98□□□□□ -0.33
HERC4-214ENST00000513996 NRXN3Q9Y4C0 1643 aa12.98□□□□□ -0.33
HERC4-214ENST00000513996 RPGRIP1LQ68CZ1 1315 aa12.97□□□□□ -0.33
HERC4-214ENST00000513996 VGFO15240 615 aaPredicted RBP12.97□□□□□ -0.33
HERC4-214ENST00000513996 RGL3Q3MIN7 710 aa12.97□□□□□ -0.33
HERC4-214ENST00000513996 SETBP1Q9Y6X0 1596 aa12.96□□□□□ -0.33
HERC4-214ENST00000513996 KIF1BO60333 1816 aa12.96□□□□□ -0.33
HERC4-214ENST00000513996 DIP2AQ14689 1571 aa12.95□□□□□ -0.34
HERC4-214ENST00000513996 FAM135BQ49AJ0 1406 aa12.95□□□□□ -0.34
HERC4-214ENST00000513996 SPATA31E1Q6ZUB1 1445 aa12.95□□□□□ -0.34
HERC4-214ENST00000513996 MSH6P52701 1360 aa12.94□□□□□ -0.34
HERC4-214ENST00000513996 DISP3Q9P2K9 1392 aa12.94□□□□□ -0.34
HERC4-214ENST00000513996 ADGRF5Q8IZF2 1346 aa12.94□□□□□ -0.34
HERC4-214ENST00000513996 ACIN1Q9UKV3 1341 aaKnown RBP12.94□□□□□ -0.34
HERC4-214ENST00000513996 SLAIN2Q9P270 581 aa12.94□□□□□ -0.34
HERC4-214ENST00000513996 CCDC144AA2RUR9 1427 aa12.94□□□□□ -0.34
HERC4-214ENST00000513996 HRCP23327 699 aa12.93□□□□□ -0.34
HERC4-214ENST00000513996 ILDR2Q71H61 639 aa12.93□□□□□ -0.34
HERC4-214ENST00000513996 C19orf44Q9H6X5 657 aa12.93□□□□□ -0.34
HERC4-214ENST00000513996 NCOA3Q9Y6Q9 1424 aa12.93□□□□□ -0.34
HERC4-214ENST00000513996 C14orf37Q86TY3 774 aa12.92□□□□□ -0.34
HERC4-214ENST00000513996 ANKRD30BQ9BXX2 1392 aa12.9□□□□□ -0.34
HERC4-214ENST00000513996 XRN1Q8IZH2 1706 aaKnown RBP12.89□□□□□ -0.35
HERC4-214ENST00000513996 ATF3P18847 181 aa12.89□□□□□ -0.35
HERC4-214ENST00000513996 PPLO60437 1756 aa12.89□□□□□ -0.35
HERC4-214ENST00000513996 CADPS2Q86UW7 1296 aa12.88□□□□□ -0.35
HERC4-214ENST00000513996 RNF39Q9H2S5 420 aa12.88□□□□□ -0.35
HERC4-214ENST00000513996 ROBO2Q9HCK4 1378 aa12.88□□□□□ -0.35
HERC4-214ENST00000513996 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.87□□□□□ -0.35
HERC4-214ENST00000513996 ROBO1Q9Y6N7 1651 aa12.86□□□□□ -0.35
HERC4-214ENST00000513996 SETD1AO15047 1707 aaKnown RBP12.86□□□□□ -0.35
HERC4-214ENST00000513996 TMEM132EQ6IEE7 984 aa12.86□□□□□ -0.35
HERC4-214ENST00000513996 ZBTB22O15209 634 aa12.85□□□□□ -0.35
HERC4-214ENST00000513996 BRINP3Q76B58 766 aa12.84□□□□□ -0.35
HERC4-214ENST00000513996 C14orf93Q9H972 538 aaKnown RBP12.84□□□□□ -0.35
HERC4-214ENST00000513996 STK26Q9P289 416 aa12.84□□□□□ -0.35
HERC4-214ENST00000513996 MED1Q15648 1581 aaPredicted RBP12.83□□□□□ -0.36
HERC4-214ENST00000513996 PIK3C2GO75747 1445 aa12.83□□□□□ -0.36
HERC4-214ENST00000513996 ADGRL3Q9HAR2 1447 aa12.83□□□□□ -0.36
HERC4-214ENST00000513996 CFAP70Q5T0N1 1121 aa12.83□□□□□ -0.36
HERC4-214ENST00000513996 WAPLQ7Z5K2 1190 aa12.83□□□□□ -0.36
HERC4-214ENST00000513996 IFT172Q9UG01 1749 aa12.82□□□□□ -0.36
HERC4-214ENST00000513996 DCCP43146 1447 aa12.82□□□□□ -0.36
HERC4-214ENST00000513996 MST1RQ04912 1400 aa12.82□□□□□ -0.36
HERC4-214ENST00000513996 PTCH1Q13635 1447 aa12.82□□□□□ -0.36
HERC4-214ENST00000513996 PRAG1Q86YV5 1406 aa12.81□□□□□ -0.36
HERC4-214ENST00000513996 DDX17Q92841 729 aaKnown RBP12.81□□□□□ -0.36
HERC4-214ENST00000513996 KDM2AQ9Y2K7 1162 aa12.81□□□□□ -0.36
HERC4-214ENST00000513996 LRPPRCP42704 1394 aaKnown RBP12.81□□□□□ -0.36
HERC4-214ENST00000513996 ABCC11Q96J66 1382 aa12.81□□□□□ -0.36
HERC4-214ENST00000513996 NRXN1Q9ULB1 1477 aa12.8□□□□□ -0.36
HERC4-214ENST00000513996 ASXL1Q8IXJ9 1541 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms