RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 XIRP1Q702N8 1843 aaKnown RBP32.33■■■□□ 2.77
SQSTM1-210ENST00000506042 SLC26A8Q96RN1 970 aa32.32■■■□□ 2.76
SQSTM1-210ENST00000506042 GCC2Q8IWJ2 1684 aa32.31■■■□□ 2.76
SQSTM1-210ENST00000506042 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.3■■■□□ 2.76
SQSTM1-210ENST00000506042 MSH6P52701 1360 aa32.3■■■□□ 2.76
SQSTM1-210ENST00000506042 NWD1Q149M9 1564 aa32.26■■■□□ 2.75
SQSTM1-210ENST00000506042 PLEKHG1Q9ULL1 1385 aa32.25■■■□□ 2.75
SQSTM1-210ENST00000506042 UNC13BO14795 1591 aa32.24■■■□□ 2.75
SQSTM1-210ENST00000506042 ROCK1Q13464 1354 aa32.23■■■□□ 2.75
SQSTM1-210ENST00000506042 RIMS2Q9UQ26 1411 aa32.22■■■□□ 2.75
SQSTM1-210ENST00000506042 CHGAP10645 457 aaKnown RBP32.21■■■□□ 2.75
SQSTM1-210ENST00000506042 ROBO1Q9Y6N7 1651 aa32.18■■■□□ 2.74
SQSTM1-210ENST00000506042 ZFYVE9O95405 1425 aa32.17■■■□□ 2.74
SQSTM1-210ENST00000506042 TMEM131LA2VDJ0 1609 aa32.17■■■□□ 2.74
SQSTM1-210ENST00000506042 MYO5BQ9ULV0 1848 aa32.15■■■□□ 2.74
SQSTM1-210ENST00000506042 C14orf37Q86TY3 774 aa32.15■■■□□ 2.74
SQSTM1-210ENST00000506042 TBX22Q9Y458 520 aa32.15■■■□□ 2.74
SQSTM1-210ENST00000506042 NCOA3Q9Y6Q9 1424 aa32.15■■■□□ 2.74
SQSTM1-210ENST00000506042 DIP2AQ14689 1571 aa32.15■■■□□ 2.74
SQSTM1-210ENST00000506042 IQGAP3Q86VI3 1631 aa32.14■■■□□ 2.74
SQSTM1-210ENST00000506042 CHD2O14647 1828 aaKnown RBP32.13■■■□□ 2.73
SQSTM1-210ENST00000506042 SLAIN2Q9P270 581 aa32.11■■■□□ 2.73
SQSTM1-210ENST00000506042 E9PCH4 1651 aa32.11■■■□□ 2.73
SQSTM1-210ENST00000506042 PIK3R4Q99570 1358 aa32.1■■■□□ 2.73
SQSTM1-210ENST00000506042 NUP155O75694 1391 aa32.08■■■□□ 2.73
SQSTM1-210ENST00000506042 RBM33Q96EV2 1170 aaKnown RBP32.07■■■□□ 2.72
SQSTM1-210ENST00000506042 PHLPP1O60346 1717 aa32.05■■■□□ 2.72
SQSTM1-210ENST00000506042 ITGAEP38570 1179 aa32.04■■■□□ 2.72
SQSTM1-210ENST00000506042 CADPS2Q86UW7 1296 aa32.04■■■□□ 2.72
SQSTM1-210ENST00000506042 ATF3P18847 181 aa32.03■■■□□ 2.72
SQSTM1-210ENST00000506042 TRPM2O94759 1503 aa32.03■■■□□ 2.72
SQSTM1-210ENST00000506042 JCADQ9P266 1359 aa32.02■■■□□ 2.72
SQSTM1-210ENST00000506042 C19orf44Q9H6X5 657 aa31.98■■■□□ 2.71
SQSTM1-210ENST00000506042 ADAMTS13Q76LX8 1427 aa31.93■■■□□ 2.7
SQSTM1-210ENST00000506042 NUTM2DQ5VT03 806 aaPredicted RBP31.93■■■□□ 2.7
SQSTM1-210ENST00000506042 SPHKAPQ2M3C7 1700 aa31.92■■■□□ 2.7
SQSTM1-210ENST00000506042 ZNF326Q5BKZ1 582 aaKnown RBP31.92■■■□□ 2.7
SQSTM1-210ENST00000506042 RGS17Q9UGC6 210 aaPredicted RBP31.92■■■□□ 2.7
SQSTM1-210ENST00000506042 SPATA31A6Q5VVP1 1343 aa31.91■■■□□ 2.7
SQSTM1-210ENST00000506042 MEX3CQ5U5Q3 659 aaKnown RBP31.89■■■□□ 2.7
SQSTM1-210ENST00000506042 AMOTL2Q9Y2J4 779 aa31.89■■■□□ 2.7
SQSTM1-210ENST00000506042 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.89■■■□□ 2.69
SQSTM1-210ENST00000506042 DCCP43146 1447 aa31.87■■■□□ 2.69
SQSTM1-210ENST00000506042 COL16A1Q07092 1604 aaPredicted RBP31.85■■■□□ 2.69
SQSTM1-210ENST00000506042 AHDC1Q5TGY3 1603 aaPredicted RBP31.82■■■□□ 2.69
SQSTM1-210ENST00000506042 SETBP1Q9Y6X0 1596 aa31.82■■■□□ 2.68
SQSTM1-210ENST00000506042 POTEAQ6S8J7 498 aa31.81■■■□□ 2.68
SQSTM1-210ENST00000506042 ZNF772Q68DY9 489 aaPredicted RBP31.8■■■□□ 2.68
SQSTM1-210ENST00000506042 SHPRHQ149N8 1683 aa31.76■■■□□ 2.68
SQSTM1-210ENST00000506042 KIF1BO60333 1816 aa31.76■■■□□ 2.67
SQSTM1-210ENST00000506042 XRN1Q8IZH2 1706 aaKnown RBP31.75■■■□□ 2.67
SQSTM1-210ENST00000506042 PPARGC1BQ86YN6 1023 aaKnown RBP31.74■■■□□ 2.67
SQSTM1-210ENST00000506042 PTPRUQ92729 1446 aa31.71■■■□□ 2.67
SQSTM1-210ENST00000506042 BRINP3Q76B58 766 aa31.7■■■□□ 2.67
SQSTM1-210ENST00000506042 NRXN3Q9Y4C0 1643 aa31.7■■■□□ 2.66
SQSTM1-210ENST00000506042 RRBP1Q9P2E9 1410 aaKnown RBP31.69■■■□□ 2.66
SQSTM1-210ENST00000506042 VGFO15240 615 aaPredicted RBP31.69■■■□□ 2.66
SQSTM1-210ENST00000506042 TRIM52Q96A61 297 aa31.67■■■□□ 2.66
SQSTM1-210ENST00000506042 CLTCL1P53675 1640 aa31.67■■■□□ 2.66
SQSTM1-210ENST00000506042 ASXL1Q8IXJ9 1541 aa31.66■■■□□ 2.66
SQSTM1-210ENST00000506042 LRRC59Q96AG4 307 aaKnown RBP31.66■■■□□ 2.66
SQSTM1-210ENST00000506042 ADGRL3Q9HAR2 1447 aa31.66■■■□□ 2.66
SQSTM1-210ENST00000506042 NEXMIFQ5QGS0 1516 aa31.65■■■□□ 2.66
SQSTM1-210ENST00000506042 NAIPQ13075 1403 aa31.64■■■□□ 2.66
SQSTM1-210ENST00000506042 METP08581 1390 aa31.62■■■□□ 2.65
SQSTM1-210ENST00000506042 MST1RQ04912 1400 aa31.62■■■□□ 2.65
SQSTM1-210ENST00000506042 RPGRIP1LQ68CZ1 1315 aa31.62■■■□□ 2.65
SQSTM1-210ENST00000506042 SETD1AO15047 1707 aaKnown RBP31.61■■■□□ 2.65
SQSTM1-210ENST00000506042 LRP6O75581 1613 aa31.61■■■□□ 2.65
SQSTM1-210ENST00000506042 SETD5Q9C0A6 1442 aa31.6■■■□□ 2.65
SQSTM1-210ENST00000506042 NUTM2BA6NNL0 878 aaPredicted RBP31.6■■■□□ 2.65
SQSTM1-210ENST00000506042 NUTM2EB1AL46 878 aaPredicted RBP31.6■■■□□ 2.65
SQSTM1-210ENST00000506042 NUTM2AQ8IVF1 878 aaPredicted RBP31.6■■■□□ 2.65
SQSTM1-210ENST00000506042 NHSL1Q5SYE7 1610 aa31.59■■■□□ 2.65
SQSTM1-210ENST00000506042 RXRBP28702 533 aa31.57■■■□□ 2.64
SQSTM1-210ENST00000506042 SLC4A1APQ9BWU0 796 aaKnown RBP31.57■■■□□ 2.64
SQSTM1-210ENST00000506042 HFM1A2PYH4 1435 aa31.57■■■□□ 2.64
SQSTM1-210ENST00000506042 PTCH1Q13635 1447 aa31.56■■■□□ 2.64
SQSTM1-210ENST00000506042 NALCNQ8IZF0 1738 aa31.53■■■□□ 2.64
SQSTM1-210ENST00000506042 CDK12Q9NYV4 1490 aaPredicted RBP31.5■■■□□ 2.63
SQSTM1-210ENST00000506042 AFF2P51816 1311 aa31.48■■■□□ 2.63
SQSTM1-210ENST00000506042 ACIN1Q9UKV3 1341 aaKnown RBP31.47■■■□□ 2.63
SQSTM1-210ENST00000506042 C1orf167Q5SNV9 1468 aa31.45■■■□□ 2.62
SQSTM1-210ENST00000506042 PRAG1Q86YV5 1406 aa31.44■■■□□ 2.62
SQSTM1-210ENST00000506042 C8orf37Q96NL8 207 aa31.43■■■□□ 2.62
SQSTM1-210ENST00000506042 PNPLA6Q8IY17 1366 aa31.43■■■□□ 2.62
SQSTM1-210ENST00000506042 PPLO60437 1756 aa31.42■■■□□ 2.62
SQSTM1-210ENST00000506042 CCDC144AA2RUR9 1427 aa31.41■■■□□ 2.62
SQSTM1-210ENST00000506042 NGLY1Q96IV0 654 aa31.39■■■□□ 2.62
SQSTM1-210ENST00000506042 LAMC1P11047 1609 aa31.38■■■□□ 2.61
SQSTM1-210ENST00000506042 RBM6P78332 1123 aaKnown RBP31.37■■■□□ 2.61
SQSTM1-210ENST00000506042 ROBO2Q9HCK4 1378 aa31.37■■■□□ 2.61
SQSTM1-210ENST00000506042 UPF1Q92900 1129 aaKnown RBP eCLIP31.36■■■□□ 2.61
SQSTM1-210ENST00000506042 ANKRD30BQ9BXX2 1392 aa31.35■■■□□ 2.61
SQSTM1-210ENST00000506042 QTRT2Q9H974 415 aaKnown RBP31.35■■■□□ 2.61
SQSTM1-210ENST00000506042 NPHP3Q7Z494 1330 aa31.34■■■□□ 2.61
SQSTM1-210ENST00000506042 LRPPRCP42704 1394 aaKnown RBP31.33■■■□□ 2.61
SQSTM1-210ENST00000506042 SOS2Q07890 1332 aaPredicted RBP31.32■■■□□ 2.6
SQSTM1-210ENST00000506042 DDX17Q92841 729 aaKnown RBP31.32■■■□□ 2.6
SQSTM1-210ENST00000506042 CDC42BPGQ6DT37 1551 aa31.31■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms