RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 IQGAP1P46940 1657 aa22.87■■□□□ 1.25
CPNE1-228ENST00000498814 NPHP4O75161 1426 aaPredicted RBP22.86■■□□□ 1.25
CPNE1-228ENST00000498814 RIMS2Q9UQ26 1411 aa22.86■■□□□ 1.25
CPNE1-228ENST00000498814 HDGFP51858 240 aaKnown RBP22.86■■□□□ 1.25
CPNE1-228ENST00000498814 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.83■■□□□ 1.25
CPNE1-228ENST00000498814 ZNF326Q5BKZ1 582 aaKnown RBP22.82■■□□□ 1.24
CPNE1-228ENST00000498814 SPATA31E1Q6ZUB1 1445 aa22.82■■□□□ 1.24
CPNE1-228ENST00000498814 NEXMIFQ5QGS0 1516 aa22.8■■□□□ 1.24
CPNE1-228ENST00000498814 DHX57Q6P158 1386 aaKnown RBP22.79■■□□□ 1.24
CPNE1-228ENST00000498814 RPGRIP1LQ68CZ1 1315 aa22.79■■□□□ 1.24
CPNE1-228ENST00000498814 PPP1R15AO75807 674 aaPredicted RBP22.78■■□□□ 1.24
CPNE1-228ENST00000498814 PPLO60437 1756 aa22.78■■□□□ 1.24
CPNE1-228ENST00000498814 PLEKHG1Q9ULL1 1385 aa22.77■■□□□ 1.24
CPNE1-228ENST00000498814 NUTM2DQ5VT03 806 aaPredicted RBP22.75■■□□□ 1.23
CPNE1-228ENST00000498814 IFT172Q9UG01 1749 aa22.74■■□□□ 1.23
CPNE1-228ENST00000498814 RGL3Q3MIN7 710 aa22.73■■□□□ 1.23
CPNE1-228ENST00000498814 VGFO15240 615 aaPredicted RBP22.71■■□□□ 1.23
CPNE1-228ENST00000498814 BCANQ96GW7 911 aa22.7■■□□□ 1.22
CPNE1-228ENST00000498814 SETBP1Q9Y6X0 1596 aa22.69■■□□□ 1.22
CPNE1-228ENST00000498814 LTBP4Q8N2S1 1624 aa22.68■■□□□ 1.22
CPNE1-228ENST00000498814 NRXN3Q9Y4C0 1643 aa22.68■■□□□ 1.22
CPNE1-228ENST00000498814 DIP2AQ14689 1571 aa22.68■■□□□ 1.22
CPNE1-228ENST00000498814 ZNF335Q9H4Z2 1342 aaPredicted RBP22.68■■□□□ 1.22
CPNE1-228ENST00000498814 SLC26A8Q96RN1 970 aa22.68■■□□□ 1.22
CPNE1-228ENST00000498814 ADAMTS13Q76LX8 1427 aa22.67■■□□□ 1.22
CPNE1-228ENST00000498814 TBX22Q9Y458 520 aa22.67■■□□□ 1.22
CPNE1-228ENST00000498814 SENP3Q9H4L4 574 aaPredicted RBP22.65■■□□□ 1.22
CPNE1-228ENST00000498814 STRCP1A6NGW2 1772 aa22.65■■□□□ 1.22
CPNE1-228ENST00000498814 CHD2O14647 1828 aaKnown RBP22.64■■□□□ 1.21
CPNE1-228ENST00000498814 MYOM2P54296 1465 aa22.62■■□□□ 1.21
CPNE1-228ENST00000498814 CPS1P31327 1500 aa22.62■■□□□ 1.21
CPNE1-228ENST00000498814 ADGRF5Q8IZF2 1346 aa22.61■■□□□ 1.21
CPNE1-228ENST00000498814 SIN3AQ96ST3 1273 aa22.61■■□□□ 1.21
CPNE1-228ENST00000498814 PIK3R4Q99570 1358 aa22.61■■□□□ 1.21
CPNE1-228ENST00000498814 STAC3Q96MF2 364 aa22.6■■□□□ 1.21
CPNE1-228ENST00000498814 NRXN1Q9ULB1 1477 aa22.6■■□□□ 1.21
CPNE1-228ENST00000498814 SETD1AO15047 1707 aaKnown RBP22.6■■□□□ 1.21
CPNE1-228ENST00000498814 NWD1Q149M9 1564 aa22.59■■□□□ 1.21
CPNE1-228ENST00000498814 ALKQ9UM73 1620 aa22.58■■□□□ 1.21
CPNE1-228ENST00000498814 KCNA6P17658 529 aa22.58■■□□□ 1.21
CPNE1-228ENST00000498814 PIK3C2GO75747 1445 aa22.57■■□□□ 1.2
CPNE1-228ENST00000498814 CERKQ8TCT0 537 aa22.57■■□□□ 1.2
CPNE1-228ENST00000498814 DCAF11Q8TEB1 546 aa22.57■■□□□ 1.2
CPNE1-228ENST00000498814 NEUROD1Q13562 356 aa22.55■■□□□ 1.2
CPNE1-228ENST00000498814 METP08581 1390 aa22.54■■□□□ 1.2
CPNE1-228ENST00000498814 KDM2AQ9Y2K7 1162 aa22.53■■□□□ 1.2
CPNE1-228ENST00000498814 NKTRP30414 1462 aaKnown RBP22.53■■□□□ 1.2
CPNE1-228ENST00000498814 IQSEC2Q5JU85 1478 aa22.53■■□□□ 1.2
CPNE1-228ENST00000498814 LAMC1P11047 1609 aa22.53■■□□□ 1.2
CPNE1-228ENST00000498814 LRRC7Q96NW7 1537 aa22.52■■□□□ 1.2
CPNE1-228ENST00000498814 PTPRUQ92729 1446 aa22.51■■□□□ 1.19
CPNE1-228ENST00000498814 CLSPNQ9HAW4 1339 aa22.51■■□□□ 1.19
CPNE1-228ENST00000498814 XRN1Q8IZH2 1706 aaKnown RBP22.51■■□□□ 1.19
CPNE1-228ENST00000498814 C14orf93Q9H972 538 aaKnown RBP22.5■■□□□ 1.19
CPNE1-228ENST00000498814 XIRP1Q702N8 1843 aaKnown RBP22.5■■□□□ 1.19
CPNE1-228ENST00000498814 L3MBTL2Q969R5 705 aa22.49■■□□□ 1.19
CPNE1-228ENST00000498814 AMOTL2Q9Y2J4 779 aa22.49■■□□□ 1.19
CPNE1-228ENST00000498814 CFAP70Q5T0N1 1121 aa22.46■■□□□ 1.19
CPNE1-228ENST00000498814 PROSER2Q86WR7 435 aaPredicted RBP22.46■■□□□ 1.19
CPNE1-228ENST00000498814 ASXL1Q8IXJ9 1541 aa22.45■■□□□ 1.18
CPNE1-228ENST00000498814 PRAG1Q86YV5 1406 aa22.44■■□□□ 1.18
CPNE1-228ENST00000498814 CCER1Q8TC90 406 aaPredicted RBP22.44■■□□□ 1.18
CPNE1-228ENST00000498814 KIAA1210Q9ULL0 1709 aa22.44■■□□□ 1.18
CPNE1-228ENST00000498814 TMEM94Q12767 1356 aa22.43■■□□□ 1.18
CPNE1-228ENST00000498814 TONSLQ96HA7 1378 aa22.42■■□□□ 1.18
CPNE1-228ENST00000498814 KNDC1Q76NI1 1749 aa22.41■■□□□ 1.18
CPNE1-228ENST00000498814 TMEM132EQ6IEE7 984 aa22.41■■□□□ 1.18
CPNE1-228ENST00000498814 NCOA3Q9Y6Q9 1424 aa22.4■■□□□ 1.18
CPNE1-228ENST00000498814 LRPPRCP42704 1394 aaKnown RBP22.4■■□□□ 1.18
CPNE1-228ENST00000498814 ADGRB1O14514 1584 aa22.4■■□□□ 1.18
CPNE1-228ENST00000498814 PTCH1Q13635 1447 aa22.4■■□□□ 1.18
CPNE1-228ENST00000498814 YTHDC2Q9H6S0 1430 aaKnown RBP22.4■■□□□ 1.18
CPNE1-228ENST00000498814 TECPR2O15040 1411 aa22.39■■□□□ 1.17
CPNE1-228ENST00000498814 ABCC11Q96J66 1382 aa22.38■■□□□ 1.17
CPNE1-228ENST00000498814 RBM33Q96EV2 1170 aaKnown RBP22.37■■□□□ 1.17
CPNE1-228ENST00000498814 ROBO2Q9HCK4 1378 aa22.37■■□□□ 1.17
CPNE1-228ENST00000498814 STK26Q9P289 416 aa22.35■■□□□ 1.17
CPNE1-228ENST00000498814 FBXO41Q8TF61 875 aa22.34■■□□□ 1.17
CPNE1-228ENST00000498814 TIMELESSQ9UNS1 1208 aa22.34■■□□□ 1.17
CPNE1-228ENST00000498814 TRPM1Q7Z4N2 1603 aa22.34■■□□□ 1.17
CPNE1-228ENST00000498814 SIRT1Q96EB6 747 aa22.33■■□□□ 1.17
CPNE1-228ENST00000498814 MSH6P52701 1360 aa22.32■■□□□ 1.16
CPNE1-228ENST00000498814 DLC1Q96QB1 1528 aa22.31■■□□□ 1.16
CPNE1-228ENST00000498814 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.31■■□□□ 1.16
CPNE1-228ENST00000498814 UBAP1LF5GYI3 381 aa22.31■■□□□ 1.16
CPNE1-228ENST00000498814 C19orf44Q9H6X5 657 aa22.31■■□□□ 1.16
CPNE1-228ENST00000498814 FAM135BQ49AJ0 1406 aa22.31■■□□□ 1.16
CPNE1-228ENST00000498814 TOM1O60784 492 aa22.3■■□□□ 1.16
CPNE1-228ENST00000498814 C14orf37Q86TY3 774 aa22.3■■□□□ 1.16
CPNE1-228ENST00000498814 NALCNQ8IZF0 1738 aa22.3■■□□□ 1.16
CPNE1-228ENST00000498814 NBPF1Q3BBV0 1214 aa22.29■■□□□ 1.16
CPNE1-228ENST00000498814 NBPF8Q3BBV2 869 aa22.29■■□□□ 1.16
CPNE1-228ENST00000498814 ADGRL3Q9HAR2 1447 aa22.28■■□□□ 1.16
CPNE1-228ENST00000498814 WAPLQ7Z5K2 1190 aa22.27■■□□□ 1.16
CPNE1-228ENST00000498814 DCCP43146 1447 aa22.26■■□□□ 1.15
CPNE1-228ENST00000498814 TRAK1Q9UPV9 953 aa22.26■■□□□ 1.15
CPNE1-228ENST00000498814 ARHGEF28Q8N1W1 1705 aaKnown RBP22.26■■□□□ 1.15
CPNE1-228ENST00000498814 PLEKHH1Q9ULM0 1364 aa22.25■■□□□ 1.15
CPNE1-228ENST00000498814 ATF3P18847 181 aa22.23■■□□□ 1.15
CPNE1-228ENST00000498814 CADPS2Q86UW7 1296 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms