RNA–Protein interactions for RNA: ENST00000497755.1

CLIC4-204, Transcript of chloride intracellular channel 4, humanhuman

TSL 3

Gene CLIC4, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-204ENST00000497755 RPRD2Q5VT52 1461 aaKnown RBP33.77■■■■□ 3
CLIC4-204ENST00000497755 NKTRP30414 1462 aaKnown RBP33.75■■■□□ 2.99
CLIC4-204ENST00000497755 NWD1Q149M9 1564 aa33.74■■■□□ 2.99
CLIC4-204ENST00000497755 ROBO1Q9Y6N7 1651 aa33.74■■■□□ 2.99
CLIC4-204ENST00000497755 ZFYVE9O95405 1425 aa33.73■■■□□ 2.99
CLIC4-204ENST00000497755 MYO5BQ9ULV0 1848 aa33.71■■■□□ 2.99
CLIC4-204ENST00000497755 PLEKHG1Q9ULL1 1385 aa33.71■■■□□ 2.99
CLIC4-204ENST00000497755 SLAIN2Q9P270 581 aa33.7■■■□□ 2.99
CLIC4-204ENST00000497755 HDGFP51858 240 aaKnown RBP33.69■■■□□ 2.98
CLIC4-204ENST00000497755 MSH6P52701 1360 aa33.69■■■□□ 2.98
CLIC4-204ENST00000497755 RIMS2Q9UQ26 1411 aa33.69■■■□□ 2.98
CLIC4-204ENST00000497755 POTEAQ6S8J7 498 aa33.67■■■□□ 2.98
CLIC4-204ENST00000497755 TMEM131LA2VDJ0 1609 aa33.66■■■□□ 2.98
CLIC4-204ENST00000497755 CHD2O14647 1828 aaKnown RBP33.66■■■□□ 2.98
CLIC4-204ENST00000497755 PPP1R15AO75807 674 aaPredicted RBP33.66■■■□□ 2.98
CLIC4-204ENST00000497755 TBX22Q9Y458 520 aa33.65■■■□□ 2.98
CLIC4-204ENST00000497755 GCC2Q8IWJ2 1684 aa33.64■■■□□ 2.98
CLIC4-204ENST00000497755 CHGAP10645 457 aaKnown RBP33.61■■■□□ 2.97
CLIC4-204ENST00000497755 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.6■■■□□ 2.97
CLIC4-204ENST00000497755 UNC13BO14795 1591 aa33.59■■■□□ 2.97
CLIC4-204ENST00000497755 NUTM2DQ5VT03 806 aaPredicted RBP33.57■■■□□ 2.96
CLIC4-204ENST00000497755 E9PCH4 1651 aa33.55■■■□□ 2.96
CLIC4-204ENST00000497755 ADAMTS13Q76LX8 1427 aa33.54■■■□□ 2.96
CLIC4-204ENST00000497755 PHLPP1O60346 1717 aa33.54■■■□□ 2.96
CLIC4-204ENST00000497755 NCOA3Q9Y6Q9 1424 aa33.53■■■□□ 2.96
CLIC4-204ENST00000497755 ROCK1Q13464 1354 aa33.53■■■□□ 2.96
CLIC4-204ENST00000497755 JCADQ9P266 1359 aa33.52■■■□□ 2.96
CLIC4-204ENST00000497755 C14orf37Q86TY3 774 aa33.48■■■□□ 2.95
CLIC4-204ENST00000497755 C19orf44Q9H6X5 657 aa33.47■■■□□ 2.95
CLIC4-204ENST00000497755 PIK3R4Q99570 1358 aa33.47■■■□□ 2.95
CLIC4-204ENST00000497755 IQGAP3Q86VI3 1631 aa33.46■■■□□ 2.95
CLIC4-204ENST00000497755 NUP155O75694 1391 aa33.46■■■□□ 2.95
CLIC4-204ENST00000497755 CADPS2Q86UW7 1296 aa33.44■■■□□ 2.94
CLIC4-204ENST00000497755 COL16A1Q07092 1604 aaPredicted RBP33.43■■■□□ 2.94
CLIC4-204ENST00000497755 DIP2AQ14689 1571 aa33.43■■■□□ 2.94
CLIC4-204ENST00000497755 AMOTL2Q9Y2J4 779 aa33.42■■■□□ 2.94
CLIC4-204ENST00000497755 ATF3P18847 181 aa33.41■■■□□ 2.94
CLIC4-204ENST00000497755 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.41■■■□□ 2.94
CLIC4-204ENST00000497755 ITGAEP38570 1179 aa33.4■■■□□ 2.94
CLIC4-204ENST00000497755 PTPRUQ92729 1446 aa33.38■■■□□ 2.93
CLIC4-204ENST00000497755 SPATA31A6Q5VVP1 1343 aa33.36■■■□□ 2.93
CLIC4-204ENST00000497755 TRPM2O94759 1503 aa33.34■■■□□ 2.93
CLIC4-204ENST00000497755 LRP6O75581 1613 aa33.33■■■□□ 2.93
CLIC4-204ENST00000497755 AHDC1Q5TGY3 1603 aaPredicted RBP33.31■■■□□ 2.92
CLIC4-204ENST00000497755 BRINP3Q76B58 766 aa33.3■■■□□ 2.92
CLIC4-204ENST00000497755 MEX3CQ5U5Q3 659 aaKnown RBP33.28■■■□□ 2.92
CLIC4-204ENST00000497755 PPARGC1BQ86YN6 1023 aaKnown RBP33.28■■■□□ 2.92
CLIC4-204ENST00000497755 SETD1AO15047 1707 aaKnown RBP33.27■■■□□ 2.92
CLIC4-204ENST00000497755 NRXN3Q9Y4C0 1643 aa33.25■■■□□ 2.91
CLIC4-204ENST00000497755 ZNF772Q68DY9 489 aaPredicted RBP33.25■■■□□ 2.91
CLIC4-204ENST00000497755 ZNF326Q5BKZ1 582 aaKnown RBP33.24■■■□□ 2.91
CLIC4-204ENST00000497755 SHPRHQ149N8 1683 aa33.23■■■□□ 2.91
CLIC4-204ENST00000497755 SETBP1Q9Y6X0 1596 aa33.23■■■□□ 2.91
CLIC4-204ENST00000497755 METP08581 1390 aa33.22■■■□□ 2.91
CLIC4-204ENST00000497755 DCCP43146 1447 aa33.22■■■□□ 2.91
CLIC4-204ENST00000497755 SPHKAPQ2M3C7 1700 aa33.22■■■□□ 2.91
CLIC4-204ENST00000497755 XRN1Q8IZH2 1706 aaKnown RBP33.21■■■□□ 2.91
CLIC4-204ENST00000497755 NUTM2BA6NNL0 878 aaPredicted RBP33.16■■■□□ 2.9
CLIC4-204ENST00000497755 NUTM2EB1AL46 878 aaPredicted RBP33.16■■■□□ 2.9
CLIC4-204ENST00000497755 NUTM2AQ8IVF1 878 aaPredicted RBP33.16■■■□□ 2.9
CLIC4-204ENST00000497755 MST1RQ04912 1400 aa33.16■■■□□ 2.9
CLIC4-204ENST00000497755 ASXL1Q8IXJ9 1541 aa33.15■■■□□ 2.9
CLIC4-204ENST00000497755 TRIM52Q96A61 297 aa33.15■■■□□ 2.9
CLIC4-204ENST00000497755 SETD5Q9C0A6 1442 aa33.12■■■□□ 2.89
CLIC4-204ENST00000497755 RXRBP28702 533 aa33.11■■■□□ 2.89
CLIC4-204ENST00000497755 UPF1Q92900 1129 aaKnown RBP eCLIP33.11■■■□□ 2.89
CLIC4-204ENST00000497755 NEXMIFQ5QGS0 1516 aa33.09■■■□□ 2.89
CLIC4-204ENST00000497755 LRRC59Q96AG4 307 aaKnown RBP33.09■■■□□ 2.89
CLIC4-204ENST00000497755 CLTCL1P53675 1640 aa33.09■■■□□ 2.89
CLIC4-204ENST00000497755 DDX17Q92841 729 aaKnown RBP33.08■■■□□ 2.89
CLIC4-204ENST00000497755 ADGRL3Q9HAR2 1447 aa33.07■■■□□ 2.88
CLIC4-204ENST00000497755 NHSL1Q5SYE7 1610 aa33.06■■■□□ 2.88
CLIC4-204ENST00000497755 AFF2P51816 1311 aa33.04■■■□□ 2.88
CLIC4-204ENST00000497755 NAIPQ13075 1403 aa33.02■■■□□ 2.88
CLIC4-204ENST00000497755 KIF1BO60333 1816 aa33■■■□□ 2.87
CLIC4-204ENST00000497755 NALCNQ8IZF0 1738 aa32.99■■■□□ 2.87
CLIC4-204ENST00000497755 PNPLA6Q8IY17 1366 aa32.98■■■□□ 2.87
CLIC4-204ENST00000497755 RRBP1Q9P2E9 1410 aaKnown RBP32.98■■■□□ 2.87
CLIC4-204ENST00000497755 CDK12Q9NYV4 1490 aaPredicted RBP32.98■■■□□ 2.87
CLIC4-204ENST00000497755 VGFO15240 615 aaPredicted RBP32.97■■■□□ 2.87
CLIC4-204ENST00000497755 C8orf37Q96NL8 207 aa32.96■■■□□ 2.87
CLIC4-204ENST00000497755 C1orf167Q5SNV9 1468 aa32.95■■■□□ 2.87
CLIC4-204ENST00000497755 ROBO2Q9HCK4 1378 aa32.94■■■□□ 2.86
CLIC4-204ENST00000497755 QTRT2Q9H974 415 aaKnown RBP32.93■■■□□ 2.86
CLIC4-204ENST00000497755 ORAI2Q96SN7 254 aa32.91■■■□□ 2.86
CLIC4-204ENST00000497755 PTCH1Q13635 1447 aa32.91■■■□□ 2.86
CLIC4-204ENST00000497755 RPGRIP1LQ68CZ1 1315 aa32.9■■■□□ 2.86
CLIC4-204ENST00000497755 RBM6P78332 1123 aaKnown RBP32.88■■■□□ 2.85
CLIC4-204ENST00000497755 SOS2Q07890 1332 aaPredicted RBP32.87■■■□□ 2.85
CLIC4-204ENST00000497755 ADAMTS2O95450 1211 aa32.86■■■□□ 2.85
CLIC4-204ENST00000497755 LAMC1P11047 1609 aa32.85■■■□□ 2.85
CLIC4-204ENST00000497755 NGLY1Q96IV0 654 aa32.85■■■□□ 2.85
CLIC4-204ENST00000497755 SLC4A1APQ9BWU0 796 aaKnown RBP32.85■■■□□ 2.85
CLIC4-204ENST00000497755 PRAG1Q86YV5 1406 aa32.84■■■□□ 2.85
CLIC4-204ENST00000497755 HFM1A2PYH4 1435 aa32.83■■■□□ 2.85
CLIC4-204ENST00000497755 RGS12O14924 1447 aa32.82■■■□□ 2.84
CLIC4-204ENST00000497755 PPLO60437 1756 aa32.78■■■□□ 2.84
CLIC4-204ENST00000497755 FOXD1Q16676 465 aa32.75■■■□□ 2.83
CLIC4-204ENST00000497755 FNBP4Q8N3X1 1017 aaPredicted RBP32.73■■■□□ 2.83
CLIC4-204ENST00000497755 USP21Q9UK80 565 aa32.73■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms