RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 BCANQ96GW7 911 aa35.66■■■■□ 3.3
COL27A1-208ENST00000494780 PROSER2Q86WR7 435 aaPredicted RBP35.65■■■■□ 3.3
COL27A1-208ENST00000494780 TMEM131LA2VDJ0 1609 aa35.65■■■■□ 3.3
COL27A1-208ENST00000494780 RIMS2Q9UQ26 1411 aa35.64■■■■□ 3.3
COL27A1-208ENST00000494780 NWD1Q149M9 1564 aa35.64■■■■□ 3.3
COL27A1-208ENST00000494780 PLEKHG1Q9ULL1 1385 aa35.64■■■■□ 3.3
COL27A1-208ENST00000494780 NKTRP30414 1462 aaKnown RBP35.63■■■■□ 3.29
COL27A1-208ENST00000494780 IQGAP3Q86VI3 1631 aa35.63■■■■□ 3.29
COL27A1-208ENST00000494780 E9PCH4 1651 aa35.62■■■■□ 3.29
COL27A1-208ENST00000494780 MYO5BQ9ULV0 1848 aa35.62■■■■□ 3.29
COL27A1-208ENST00000494780 FAM135BQ49AJ0 1406 aa35.61■■■■□ 3.29
COL27A1-208ENST00000494780 PPP1R15AO75807 674 aaPredicted RBP35.6■■■■□ 3.29
COL27A1-208ENST00000494780 PHF23Q9BUL5 403 aaPredicted RBP35.59■■■■□ 3.29
COL27A1-208ENST00000494780 NUP155O75694 1391 aa35.57■■■■□ 3.28
COL27A1-208ENST00000494780 ITGAEP38570 1179 aa35.57■■■■□ 3.28
COL27A1-208ENST00000494780 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.56■■■■□ 3.28
COL27A1-208ENST00000494780 CHGAP10645 457 aaKnown RBP35.55■■■■□ 3.28
COL27A1-208ENST00000494780 RBM33Q96EV2 1170 aaKnown RBP35.54■■■■□ 3.28
COL27A1-208ENST00000494780 PPARGC1BQ86YN6 1023 aaKnown RBP35.52■■■■□ 3.28
COL27A1-208ENST00000494780 TBX22Q9Y458 520 aa35.52■■■■□ 3.28
COL27A1-208ENST00000494780 CHD2O14647 1828 aaKnown RBP35.5■■■■□ 3.27
COL27A1-208ENST00000494780 MSH6P52701 1360 aa35.5■■■■□ 3.27
COL27A1-208ENST00000494780 ROBO1Q9Y6N7 1651 aa35.46■■■■□ 3.27
COL27A1-208ENST00000494780 ADAMTS13Q76LX8 1427 aa35.43■■■■□ 3.26
COL27A1-208ENST00000494780 DIP2AQ14689 1571 aa35.42■■■■□ 3.26
COL27A1-208ENST00000494780 NUTM2DQ5VT03 806 aaPredicted RBP35.42■■■■□ 3.26
COL27A1-208ENST00000494780 NCOA3Q9Y6Q9 1424 aa35.4■■■■□ 3.26
COL27A1-208ENST00000494780 PIK3R4Q99570 1358 aa35.39■■■■□ 3.26
COL27A1-208ENST00000494780 SLAIN2Q9P270 581 aa35.39■■■■□ 3.26
COL27A1-208ENST00000494780 RRBP1Q9P2E9 1410 aaKnown RBP35.34■■■■□ 3.25
COL27A1-208ENST00000494780 SPHKAPQ2M3C7 1700 aa35.33■■■■□ 3.25
COL27A1-208ENST00000494780 TRPM2O94759 1503 aa35.31■■■■□ 3.24
COL27A1-208ENST00000494780 RGS17Q9UGC6 210 aaPredicted RBP35.3■■■■□ 3.24
COL27A1-208ENST00000494780 C14orf37Q86TY3 774 aa35.28■■■■□ 3.24
COL27A1-208ENST00000494780 C19orf44Q9H6X5 657 aa35.25■■■■□ 3.23
COL27A1-208ENST00000494780 PHLPP1O60346 1717 aa35.24■■■■□ 3.23
COL27A1-208ENST00000494780 AMOTL2Q9Y2J4 779 aa35.24■■■■□ 3.23
COL27A1-208ENST00000494780 NAIPQ13075 1403 aa35.23■■■■□ 3.23
COL27A1-208ENST00000494780 CADPS2Q86UW7 1296 aa35.23■■■■□ 3.23
COL27A1-208ENST00000494780 PTPRUQ92729 1446 aa35.23■■■■□ 3.23
COL27A1-208ENST00000494780 ZNF326Q5BKZ1 582 aaKnown RBP35.22■■■■□ 3.23
COL27A1-208ENST00000494780 SETBP1Q9Y6X0 1596 aa35.21■■■■□ 3.23
COL27A1-208ENST00000494780 SIPA1L2Q9P2F8 1722 aaPredicted RBP35.2■■■■□ 3.23
COL27A1-208ENST00000494780 ATF3P18847 181 aa35.2■■■■□ 3.23
COL27A1-208ENST00000494780 NRXN3Q9Y4C0 1643 aa35.2■■■■□ 3.23
COL27A1-208ENST00000494780 JCADQ9P266 1359 aa35.19■■■■□ 3.22
COL27A1-208ENST00000494780 CLTCL1P53675 1640 aa35.16■■■■□ 3.22
COL27A1-208ENST00000494780 COL16A1Q07092 1604 aaPredicted RBP35.15■■■■□ 3.22
COL27A1-208ENST00000494780 XRN1Q8IZH2 1706 aaKnown RBP35.14■■■■□ 3.22
COL27A1-208ENST00000494780 NEXMIFQ5QGS0 1516 aa35.11■■■■□ 3.21
COL27A1-208ENST00000494780 HFM1A2PYH4 1435 aa35.11■■■■□ 3.21
COL27A1-208ENST00000494780 DCCP43146 1447 aa35.11■■■■□ 3.21
COL27A1-208ENST00000494780 AHDC1Q5TGY3 1603 aaPredicted RBP35.1■■■■□ 3.21
COL27A1-208ENST00000494780 POTEAQ6S8J7 498 aa35.09■■■■□ 3.21
COL27A1-208ENST00000494780 METP08581 1390 aa35.09■■■■□ 3.21
COL27A1-208ENST00000494780 KIF1BO60333 1816 aa35.07■■■■□ 3.2
COL27A1-208ENST00000494780 TRIM52Q96A61 297 aa35.07■■■■□ 3.2
COL27A1-208ENST00000494780 SPATA31A6Q5VVP1 1343 aa35.04■■■■□ 3.2
COL27A1-208ENST00000494780 BRINP3Q76B58 766 aa35.02■■■■□ 3.2
COL27A1-208ENST00000494780 SLC4A1APQ9BWU0 796 aaKnown RBP34.99■■■■□ 3.19
COL27A1-208ENST00000494780 VGFO15240 615 aaPredicted RBP34.97■■■■□ 3.19
COL27A1-208ENST00000494780 MST1RQ04912 1400 aa34.97■■■■□ 3.19
COL27A1-208ENST00000494780 SHPRHQ149N8 1683 aa34.96■■■■□ 3.19
COL27A1-208ENST00000494780 ADGRL3Q9HAR2 1447 aa34.96■■■■□ 3.19
COL27A1-208ENST00000494780 RPGRIP1LQ68CZ1 1315 aa34.95■■■■□ 3.19
COL27A1-208ENST00000494780 ASXL1Q8IXJ9 1541 aa34.95■■■■□ 3.19
COL27A1-208ENST00000494780 LRP6O75581 1613 aa34.95■■■■□ 3.18
COL27A1-208ENST00000494780 MEX3CQ5U5Q3 659 aaKnown RBP34.9■■■■□ 3.18
COL27A1-208ENST00000494780 PTCH1Q13635 1447 aa34.88■■■■□ 3.17
COL27A1-208ENST00000494780 NALCNQ8IZF0 1738 aa34.87■■■■□ 3.17
COL27A1-208ENST00000494780 SETD5Q9C0A6 1442 aa34.87■■■■□ 3.17
COL27A1-208ENST00000494780 SETD1AO15047 1707 aaKnown RBP34.86■■■■□ 3.17
COL27A1-208ENST00000494780 NHSL1Q5SYE7 1610 aa34.86■■■■□ 3.17
COL27A1-208ENST00000494780 ZNF772Q68DY9 489 aaPredicted RBP34.84■■■■□ 3.17
COL27A1-208ENST00000494780 PRAG1Q86YV5 1406 aa34.83■■■■□ 3.17
COL27A1-208ENST00000494780 PPLO60437 1756 aa34.82■■■■□ 3.17
COL27A1-208ENST00000494780 LRRC59Q96AG4 307 aaKnown RBP34.81■■■■□ 3.16
COL27A1-208ENST00000494780 ROBO2Q9HCK4 1378 aa34.8■■■■□ 3.16
COL27A1-208ENST00000494780 FOXD1Q16676 465 aa34.79■■■■□ 3.16
COL27A1-208ENST00000494780 NUTM2BA6NNL0 878 aaPredicted RBP34.77■■■■□ 3.16
COL27A1-208ENST00000494780 NUTM2EB1AL46 878 aaPredicted RBP34.77■■■■□ 3.16
COL27A1-208ENST00000494780 NUTM2AQ8IVF1 878 aaPredicted RBP34.77■■■■□ 3.16
COL27A1-208ENST00000494780 C1orf167Q5SNV9 1468 aa34.77■■■■□ 3.16
COL27A1-208ENST00000494780 CCDC144AA2RUR9 1427 aa34.75■■■■□ 3.15
COL27A1-208ENST00000494780 DDX17Q92841 729 aaKnown RBP34.73■■■■□ 3.15
COL27A1-208ENST00000494780 MPHOSPH9Q99550 1183 aa34.71■■■■□ 3.15
COL27A1-208ENST00000494780 PNPLA6Q8IY17 1366 aa34.69■■■■□ 3.14
COL27A1-208ENST00000494780 LAMC1P11047 1609 aa34.68■■■■□ 3.14
COL27A1-208ENST00000494780 SPATA31E1Q6ZUB1 1445 aa34.68■■■■□ 3.14
COL27A1-208ENST00000494780 ADGRF5Q8IZF2 1346 aa34.67■■■■□ 3.14
COL27A1-208ENST00000494780 ANKRD30BQ9BXX2 1392 aa34.65■■■■□ 3.14
COL27A1-208ENST00000494780 RGL3Q3MIN7 710 aa34.65■■■■□ 3.14
COL27A1-208ENST00000494780 ORAI2Q96SN7 254 aa34.65■■■■□ 3.14
COL27A1-208ENST00000494780 AFF2P51816 1311 aa34.64■■■■□ 3.14
COL27A1-208ENST00000494780 ACIN1Q9UKV3 1341 aaKnown RBP34.64■■■■□ 3.14
COL27A1-208ENST00000494780 RXRBP28702 533 aa34.64■■■■□ 3.14
COL27A1-208ENST00000494780 SOS2Q07890 1332 aaPredicted RBP34.62■■■■□ 3.13
COL27A1-208ENST00000494780 IFT172Q9UG01 1749 aa34.61■■■■□ 3.13
COL27A1-208ENST00000494780 CDC42BPGQ6DT37 1551 aa34.59■■■■□ 3.13
COL27A1-208ENST00000494780 TECPR2O15040 1411 aa34.58■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 131.8 ms