RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 EVA1CP58658 441 aa23.53■■□□□ 1.36
COL27A1-207ENST00000494090 TTC5Q8N0Z6 440 aa23.53■■□□□ 1.36
COL27A1-207ENST00000494090 FOXD4L5Q5VV16 416 aaPredicted RBP23.52■■□□□ 1.36
COL27A1-207ENST00000494090 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.52■■□□□ 1.36
COL27A1-207ENST00000494090 FOXD4L4Q8WXT5 416 aaPredicted RBP23.52■■□□□ 1.36
COL27A1-207ENST00000494090 MINK1Q8N4C8 1332 aaPredicted RBP23.52■■□□□ 1.36
COL27A1-207ENST00000494090 API5Q9BZZ5 524 aaKnown RBP23.52■■□□□ 1.36
COL27A1-207ENST00000494090 AAMPQ13685 434 aa23.52■■□□□ 1.36
COL27A1-207ENST00000494090 ZNF644Q9H582 1327 aaPredicted RBP23.51■■□□□ 1.35
COL27A1-207ENST00000494090 NCOA2Q15596 1464 aa23.51■■□□□ 1.35
COL27A1-207ENST00000494090 BRD4O60885 1362 aaPredicted RBP23.51■■□□□ 1.35
COL27A1-207ENST00000494090 TPM3P06753 285 aa23.51■■□□□ 1.35
COL27A1-207ENST00000494090 RRBP1Q9P2E9 1410 aaKnown RBP23.5■■□□□ 1.35
COL27A1-207ENST00000494090 REC8O95072 547 aa23.5■■□□□ 1.35
COL27A1-207ENST00000494090 RIPK4P57078 832 aa23.5■■□□□ 1.35
COL27A1-207ENST00000494090 CEP89Q96ST8 783 aa23.5■■□□□ 1.35
COL27A1-207ENST00000494090 ERICH3Q5RHP9 1530 aa23.5■■□□□ 1.35
COL27A1-207ENST00000494090 WASHC2AQ641Q2 1341 aa23.5■■□□□ 1.35
COL27A1-207ENST00000494090 RUFY2Q8WXA3 655 aa23.5■■□□□ 1.35
COL27A1-207ENST00000494090 AKAP17AQ02040 695 aaKnown RBP23.49■■□□□ 1.35
COL27A1-207ENST00000494090 CPLX2Q6PUV4 134 aaKnown RBP23.49■■□□□ 1.35
COL27A1-207ENST00000494090 ANKRD50Q9ULJ7 1429 aa23.49■■□□□ 1.35
COL27A1-207ENST00000494090 H3BQV1 296 aa23.48■■□□□ 1.35
COL27A1-207ENST00000494090 IFFO2Q5TF58 517 aa23.48■■□□□ 1.35
COL27A1-207ENST00000494090 SYNE3Q6ZMZ3 975 aa23.48■■□□□ 1.35
COL27A1-207ENST00000494090 ARID3AQ99856 593 aa23.47■■□□□ 1.35
COL27A1-207ENST00000494090 RSPH6AQ9H0K4 717 aa23.47■■□□□ 1.35
COL27A1-207ENST00000494090 AMOTL1Q8IY63 956 aa23.47■■□□□ 1.35
COL27A1-207ENST00000494090 FAM184AQ8NB25 1140 aa23.47■■□□□ 1.35
COL27A1-207ENST00000494090 OSCARQ8IYS5 282 aa23.47■■□□□ 1.35
COL27A1-207ENST00000494090 CHMP5Q9NZZ3 219 aa23.47■■□□□ 1.35
COL27A1-207ENST00000494090 ROCK1Q13464 1354 aa23.47■■□□□ 1.35
COL27A1-207ENST00000494090 NOL10Q9BSC4 688 aaKnown RBP23.46■■□□□ 1.35
COL27A1-207ENST00000494090 DDX58O95786 925 aaKnown RBP23.46■■□□□ 1.35
COL27A1-207ENST00000494090 GOLGA6L1Q8N7Z2 621 aa23.46■■□□□ 1.35
COL27A1-207ENST00000494090 DIAPH3Q9NSV4 1193 aa23.45■■□□□ 1.34
COL27A1-207ENST00000494090 C9orf78Q9NZ63 289 aaPredicted RBP23.43■■□□□ 1.34
COL27A1-207ENST00000494090 VPS53Q5VIR6 699 aa23.43■■□□□ 1.34
COL27A1-207ENST00000494090 ARAP1Q96P48 1450 aa23.41■■□□□ 1.34
COL27A1-207ENST00000494090 ZKSCAN1P17029 563 aaPredicted RBP23.41■■□□□ 1.34
COL27A1-207ENST00000494090 TSR1Q2NL82 804 aaKnown RBP23.4■■□□□ 1.34
COL27A1-207ENST00000494090 GNAI1P63096 354 aa23.4■■□□□ 1.34
COL27A1-207ENST00000494090 NCAPD3P42695 1498 aa23.4■■□□□ 1.34
COL27A1-207ENST00000494090 TPD52L1Q16890 204 aaPredicted RBP23.4■■□□□ 1.34
COL27A1-207ENST00000494090 A0A0U1RQG5 324 aaPredicted RBP23.39■■□□□ 1.34
COL27A1-207ENST00000494090 CREBRFQ8IUR6 639 aa23.39■■□□□ 1.34
COL27A1-207ENST00000494090 TPM2P07951 284 aa23.39■■□□□ 1.33
COL27A1-207ENST00000494090 CYB5RLQ6IPT4 315 aa23.38■■□□□ 1.33
COL27A1-207ENST00000494090 PSME1Q06323 249 aa23.38■■□□□ 1.33
COL27A1-207ENST00000494090 TPM1P09493 284 aa23.37■■□□□ 1.33
COL27A1-207ENST00000494090 ADAMTS8Q9UP79 889 aa23.36■■□□□ 1.33
COL27A1-207ENST00000494090 HSP90AB4PQ58FF6 505 aa23.36■■□□□ 1.33
COL27A1-207ENST00000494090 GOLGA6L19H0YKK7 550 aa23.36■■□□□ 1.33
COL27A1-207ENST00000494090 INTS3Q68E01 1043 aaKnown RBP23.36■■□□□ 1.33
COL27A1-207ENST00000494090 PRDM2Q13029 1718 aa23.36■■□□□ 1.33
COL27A1-207ENST00000494090 IFIT2P09913 472 aaKnown RBP23.36■■□□□ 1.33
COL27A1-207ENST00000494090 TRIM29Q14134 588 aa23.35■■□□□ 1.33
COL27A1-207ENST00000494090 HSP90AA2PQ14568 343 aaPredicted RBP23.35■■□□□ 1.33
COL27A1-207ENST00000494090 TRIM34Q9BYJ4 488 aa23.35■■□□□ 1.33
COL27A1-207ENST00000494090 C22orf23Q9BZE7 217 aa23.35■■□□□ 1.33
COL27A1-207ENST00000494090 RNF20Q5VTR2 975 aa23.34■■□□□ 1.33
COL27A1-207ENST00000494090 EIF2S2P20042 333 aaKnown RBP23.34■■□□□ 1.33
COL27A1-207ENST00000494090 FOXD4L6Q3SYB3 417 aaPredicted RBP23.34■■□□□ 1.33
COL27A1-207ENST00000494090 FOXD4L3Q6VB84 417 aaPredicted RBP23.34■■□□□ 1.33
COL27A1-207ENST00000494090 PANK1Q8TE04 598 aa23.33■■□□□ 1.33
COL27A1-207ENST00000494090 CCDC47Q96A33 483 aaKnown RBP23.33■■□□□ 1.33
COL27A1-207ENST00000494090 BECN2A8MW95 431 aa23.33■■□□□ 1.33
COL27A1-207ENST00000494090 NUCB2P80303 420 aa23.33■■□□□ 1.33
COL27A1-207ENST00000494090 G3BP1Q13283 466 aaKnown RBP eCLIP23.32■■□□□ 1.32
COL27A1-207ENST00000494090 LNPKQ9C0E8 428 aa23.31■■□□□ 1.32
COL27A1-207ENST00000494090 FKBP5Q13451 457 aaPredicted RBP23.31■■□□□ 1.32
COL27A1-207ENST00000494090 TRDNQ13061 729 aa23.3■■□□□ 1.32
COL27A1-207ENST00000494090 PES1O00541 588 aaKnown RBP23.3■■□□□ 1.32
COL27A1-207ENST00000494090 CTDP1Q9Y5B0 961 aaPredicted RBP23.3■■□□□ 1.32
COL27A1-207ENST00000494090 MSH5O43196 834 aa23.3■■□□□ 1.32
COL27A1-207ENST00000494090 SYNJ1O43426 1573 aa23.3■■□□□ 1.32
COL27A1-207ENST00000494090 PRM3Q9NNZ6 103 aa23.29■■□□□ 1.32
COL27A1-207ENST00000494090 ANO2Q9NQ90 1003 aa23.29■■□□□ 1.32
COL27A1-207ENST00000494090 AQRO60306 1485 aaKnown RBP eCLIP23.29■■□□□ 1.325e-7■■■□□ 16.8
COL27A1-207ENST00000494090 RAPGEF4Q8WZA2 1011 aa23.29■■□□□ 1.32
COL27A1-207ENST00000494090 TCEAL9Q9UHQ7 104 aa23.29■■□□□ 1.32
COL27A1-207ENST00000494090 EFCAB5A4FU69 1503 aa23.29■■□□□ 1.32
COL27A1-207ENST00000494090 CPLX1O14810 134 aa23.29■■□□□ 1.32
COL27A1-207ENST00000494090 PPP2R1AP30153 589 aa23.28■■□□□ 1.32
COL27A1-207ENST00000494090 NFKBIBQ15653 356 aa23.28■■□□□ 1.32
COL27A1-207ENST00000494090 VPS37DQ86XT2 251 aa23.28■■□□□ 1.32
COL27A1-207ENST00000494090 CFTRP13569 1480 aa23.28■■□□□ 1.32
COL27A1-207ENST00000494090 GGNBP2Q9H3C7 697 aa23.27■■□□□ 1.32
COL27A1-207ENST00000494090 CDCA7LQ96GN5 454 aa23.27■■□□□ 1.32
COL27A1-207ENST00000494090 HOOK1Q9UJC3 728 aaKnown RBP23.27■■□□□ 1.32
COL27A1-207ENST00000494090 HFM1A2PYH4 1435 aa23.27■■□□□ 1.32
COL27A1-207ENST00000494090 MCTP1Q6DN14 999 aa23.26■■□□□ 1.31
COL27A1-207ENST00000494090 ANKRD20A12PQ8NF67 263 aa23.26■■□□□ 1.31
COL27A1-207ENST00000494090 TSPYL4Q9UJ04 414 aa23.26■■□□□ 1.31
COL27A1-207ENST00000494090 ERC2O15083 957 aa23.26■■□□□ 1.31
COL27A1-207ENST00000494090 WWC1Q8IX03 1113 aa23.26■■□□□ 1.31
COL27A1-207ENST00000494090 CDC45O75419 566 aa23.25■■□□□ 1.31
COL27A1-207ENST00000494090 ATF3P18847 181 aa23.25■■□□□ 1.31
COL27A1-207ENST00000494090 NECTIN2Q92692 538 aa23.25■■□□□ 1.31
COL27A1-207ENST00000494090 EHBP1L1Q8N3D4 1523 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms