RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 ZFYVE9O95405 1425 aa26.82■■□□□ 1.88
COL9A1-210ENST00000493682 UNC13BO14795 1591 aa26.81■■□□□ 1.88
COL9A1-210ENST00000493682 NWD1Q149M9 1564 aa26.81■■□□□ 1.88
COL9A1-210ENST00000493682 NKTRP30414 1462 aaKnown RBP26.81■■□□□ 1.88
COL9A1-210ENST00000493682 PLEKHG1Q9ULL1 1385 aa26.79■■□□□ 1.88
COL9A1-210ENST00000493682 RIMS2Q9UQ26 1411 aa26.79■■□□□ 1.88
COL9A1-210ENST00000493682 TMEM131LA2VDJ0 1609 aa26.79■■□□□ 1.88
COL9A1-210ENST00000493682 GCC2Q8IWJ2 1684 aa26.79■■□□□ 1.88
COL9A1-210ENST00000493682 MYO5BQ9ULV0 1848 aa26.78■■□□□ 1.88
COL9A1-210ENST00000493682 ROCK1Q13464 1354 aa26.77■■□□□ 1.88
COL9A1-210ENST00000493682 PPP1R15AO75807 674 aaPredicted RBP26.77■■□□□ 1.88
COL9A1-210ENST00000493682 HDGFP51858 240 aaKnown RBP26.77■■□□□ 1.88
COL9A1-210ENST00000493682 ROBO1Q9Y6N7 1651 aa26.74■■□□□ 1.87
COL9A1-210ENST00000493682 E9PCH4 1651 aa26.73■■□□□ 1.87
COL9A1-210ENST00000493682 RGS17Q9UGC6 210 aaPredicted RBP26.73■■□□□ 1.87
COL9A1-210ENST00000493682 MSH6P52701 1360 aa26.72■■□□□ 1.87
COL9A1-210ENST00000493682 CHGAP10645 457 aaKnown RBP26.72■■□□□ 1.87
COL9A1-210ENST00000493682 IQGAP3Q86VI3 1631 aa26.7■■□□□ 1.86
COL9A1-210ENST00000493682 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.7■■□□□ 1.86
COL9A1-210ENST00000493682 TBX22Q9Y458 520 aa26.7■■□□□ 1.86
COL9A1-210ENST00000493682 CHD2O14647 1828 aaKnown RBP26.69■■□□□ 1.86
COL9A1-210ENST00000493682 SLAIN2Q9P270 581 aa26.68■■□□□ 1.86
COL9A1-210ENST00000493682 ITGAEP38570 1179 aa26.67■■□□□ 1.86
COL9A1-210ENST00000493682 NUTM2DQ5VT03 806 aaPredicted RBP26.67■■□□□ 1.86
COL9A1-210ENST00000493682 NUP155O75694 1391 aa26.67■■□□□ 1.86
COL9A1-210ENST00000493682 ADAMTS13Q76LX8 1427 aa26.65■■□□□ 1.86
COL9A1-210ENST00000493682 PPARGC1BQ86YN6 1023 aaKnown RBP26.62■■□□□ 1.85
COL9A1-210ENST00000493682 NCOA3Q9Y6Q9 1424 aa26.61■■□□□ 1.85
COL9A1-210ENST00000493682 DIP2AQ14689 1571 aa26.6■■□□□ 1.85
COL9A1-210ENST00000493682 PIK3R4Q99570 1358 aa26.58■■□□□ 1.85
COL9A1-210ENST00000493682 PHLPP1O60346 1717 aa26.57■■□□□ 1.84
COL9A1-210ENST00000493682 C14orf37Q86TY3 774 aa26.57■■□□□ 1.84
COL9A1-210ENST00000493682 POTEAQ6S8J7 498 aa26.56■■□□□ 1.84
COL9A1-210ENST00000493682 JCADQ9P266 1359 aa26.54■■□□□ 1.84
COL9A1-210ENST00000493682 C19orf44Q9H6X5 657 aa26.53■■□□□ 1.84
COL9A1-210ENST00000493682 TRPM2O94759 1503 aa26.53■■□□□ 1.84
COL9A1-210ENST00000493682 CADPS2Q86UW7 1296 aa26.52■■□□□ 1.84
COL9A1-210ENST00000493682 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.51■■□□□ 1.83
COL9A1-210ENST00000493682 PTPRUQ92729 1446 aa26.51■■□□□ 1.83
COL9A1-210ENST00000493682 AMOTL2Q9Y2J4 779 aa26.51■■□□□ 1.83
COL9A1-210ENST00000493682 ATF3P18847 181 aa26.5■■□□□ 1.83
COL9A1-210ENST00000493682 COL16A1Q07092 1604 aaPredicted RBP26.5■■□□□ 1.83
COL9A1-210ENST00000493682 SPHKAPQ2M3C7 1700 aa26.48■■□□□ 1.83
COL9A1-210ENST00000493682 NRXN3Q9Y4C0 1643 aa26.46■■□□□ 1.83
COL9A1-210ENST00000493682 SETBP1Q9Y6X0 1596 aa26.46■■□□□ 1.83
COL9A1-210ENST00000493682 ZNF326Q5BKZ1 582 aaKnown RBP26.45■■□□□ 1.82
COL9A1-210ENST00000493682 AHDC1Q5TGY3 1603 aaPredicted RBP26.43■■□□□ 1.82
COL9A1-210ENST00000493682 XRN1Q8IZH2 1706 aaKnown RBP26.42■■□□□ 1.82
COL9A1-210ENST00000493682 SPATA31A6Q5VVP1 1343 aa26.4■■□□□ 1.82
COL9A1-210ENST00000493682 RRBP1Q9P2E9 1410 aaKnown RBP26.4■■□□□ 1.82
COL9A1-210ENST00000493682 BRINP3Q76B58 766 aa26.4■■□□□ 1.82
COL9A1-210ENST00000493682 METP08581 1390 aa26.4■■□□□ 1.82
COL9A1-210ENST00000493682 DCCP43146 1447 aa26.39■■□□□ 1.82
COL9A1-210ENST00000493682 LRP6O75581 1613 aa26.39■■□□□ 1.82
COL9A1-210ENST00000493682 CLTCL1P53675 1640 aa26.39■■□□□ 1.81
COL9A1-210ENST00000493682 NAIPQ13075 1403 aa26.38■■□□□ 1.81
COL9A1-210ENST00000493682 NEXMIFQ5QGS0 1516 aa26.36■■□□□ 1.81
COL9A1-210ENST00000493682 SHPRHQ149N8 1683 aa26.34■■□□□ 1.81
COL9A1-210ENST00000493682 MEX3CQ5U5Q3 659 aaKnown RBP26.34■■□□□ 1.81
COL9A1-210ENST00000493682 ASXL1Q8IXJ9 1541 aa26.33■■□□□ 1.81
COL9A1-210ENST00000493682 MST1RQ04912 1400 aa26.32■■□□□ 1.8
COL9A1-210ENST00000493682 SETD1AO15047 1707 aaKnown RBP26.29■■□□□ 1.8
COL9A1-210ENST00000493682 KIF1BO60333 1816 aa26.28■■□□□ 1.8
COL9A1-210ENST00000493682 ZNF772Q68DY9 489 aaPredicted RBP26.28■■□□□ 1.8
COL9A1-210ENST00000493682 ADGRL3Q9HAR2 1447 aa26.28■■□□□ 1.8
COL9A1-210ENST00000493682 TRIM52Q96A61 297 aa26.27■■□□□ 1.8
COL9A1-210ENST00000493682 SETD5Q9C0A6 1442 aa26.26■■□□□ 1.79
COL9A1-210ENST00000493682 HFM1A2PYH4 1435 aa26.25■■□□□ 1.79
COL9A1-210ENST00000493682 NUTM2BA6NNL0 878 aaPredicted RBP26.25■■□□□ 1.79
COL9A1-210ENST00000493682 NUTM2EB1AL46 878 aaPredicted RBP26.25■■□□□ 1.79
COL9A1-210ENST00000493682 NUTM2AQ8IVF1 878 aaPredicted RBP26.25■■□□□ 1.79
COL9A1-210ENST00000493682 NHSL1Q5SYE7 1610 aa26.24■■□□□ 1.79
COL9A1-210ENST00000493682 NALCNQ8IZF0 1738 aa26.23■■□□□ 1.79
COL9A1-210ENST00000493682 VGFO15240 615 aaPredicted RBP26.23■■□□□ 1.79
COL9A1-210ENST00000493682 DDX17Q92841 729 aaKnown RBP26.21■■□□□ 1.79
COL9A1-210ENST00000493682 LRRC59Q96AG4 307 aaKnown RBP26.21■■□□□ 1.79
COL9A1-210ENST00000493682 SLC4A1APQ9BWU0 796 aaKnown RBP26.21■■□□□ 1.79
COL9A1-210ENST00000493682 RPGRIP1LQ68CZ1 1315 aa26.19■■□□□ 1.78
COL9A1-210ENST00000493682 PTCH1Q13635 1447 aa26.19■■□□□ 1.78
COL9A1-210ENST00000493682 ROBO2Q9HCK4 1378 aa26.18■■□□□ 1.78
COL9A1-210ENST00000493682 C1orf167Q5SNV9 1468 aa26.17■■□□□ 1.78
COL9A1-210ENST00000493682 RXRBP28702 533 aa26.16■■□□□ 1.78
COL9A1-210ENST00000493682 PNPLA6Q8IY17 1366 aa26.15■■□□□ 1.78
COL9A1-210ENST00000493682 AFF2P51816 1311 aa26.14■■□□□ 1.78
COL9A1-210ENST00000493682 PRAG1Q86YV5 1406 aa26.14■■□□□ 1.77
COL9A1-210ENST00000493682 PPLO60437 1756 aa26.12■■□□□ 1.77
COL9A1-210ENST00000493682 FOXD1Q16676 465 aa26.11■■□□□ 1.77
COL9A1-210ENST00000493682 UPF1Q92900 1129 aaKnown RBP eCLIP26.1■■□□□ 1.77
COL9A1-210ENST00000493682 C8orf37Q96NL8 207 aa26.1■■□□□ 1.77
COL9A1-210ENST00000493682 ORAI2Q96SN7 254 aa26.1■■□□□ 1.77
COL9A1-210ENST00000493682 LAMC1P11047 1609 aa26.08■■□□□ 1.77
COL9A1-210ENST00000493682 CDK12Q9NYV4 1490 aaPredicted RBP26.08■■□□□ 1.77
COL9A1-210ENST00000493682 SOS2Q07890 1332 aaPredicted RBP26.06■■□□□ 1.76
COL9A1-210ENST00000493682 QTRT2Q9H974 415 aaKnown RBP26.03■■□□□ 1.76
COL9A1-210ENST00000493682 ADGRF5Q8IZF2 1346 aa26.03■■□□□ 1.76
COL9A1-210ENST00000493682 CCDC144AA2RUR9 1427 aa26.03■■□□□ 1.76
COL9A1-210ENST00000493682 ADAMTS2O95450 1211 aa26.02■■□□□ 1.76
COL9A1-210ENST00000493682 RGL3Q3MIN7 710 aa26.01■■□□□ 1.75
COL9A1-210ENST00000493682 NGLY1Q96IV0 654 aa26.01■■□□□ 1.75
COL9A1-210ENST00000493682 SPATA31E1Q6ZUB1 1445 aa26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms