RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 NUP155O75694 1391 aa12.83□□□□□ -0.36
SMARCB1-207ENST00000491967 PLEKHG1Q9ULL1 1385 aa12.83□□□□□ -0.36
SMARCB1-207ENST00000491967 RIMS2Q9UQ26 1411 aa12.82□□□□□ -0.36
SMARCB1-207ENST00000491967 HDGFP51858 240 aaKnown RBP12.82□□□□□ -0.36
SMARCB1-207ENST00000491967 PPARGC1BQ86YN6 1023 aaKnown RBP12.82□□□□□ -0.36
SMARCB1-207ENST00000491967 SLC26A8Q96RN1 970 aa12.82□□□□□ -0.36
SMARCB1-207ENST00000491967 CHD2O14647 1828 aaKnown RBP12.82□□□□□ -0.36
SMARCB1-207ENST00000491967 NKTRP30414 1462 aaKnown RBP12.81□□□□□ -0.36
SMARCB1-207ENST00000491967 TBX22Q9Y458 520 aa12.81□□□□□ -0.36
SMARCB1-207ENST00000491967 FAM135BQ49AJ0 1406 aa12.8□□□□□ -0.36
SMARCB1-207ENST00000491967 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.8□□□□□ -0.36
SMARCB1-207ENST00000491967 TMEM94Q12767 1356 aa12.8□□□□□ -0.36
SMARCB1-207ENST00000491967 ADAMTS13Q76LX8 1427 aa12.79□□□□□ -0.36
SMARCB1-207ENST00000491967 NAIPQ13075 1403 aa12.79□□□□□ -0.36
SMARCB1-207ENST00000491967 ITGAEP38570 1179 aa12.78□□□□□ -0.36
SMARCB1-207ENST00000491967 SCAF1Q9H7N4 1312 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-207ENST00000491967 MED1Q15648 1581 aaPredicted RBP12.77□□□□□ -0.36
SMARCB1-207ENST00000491967 PROSER2Q86WR7 435 aaPredicted RBP12.77□□□□□ -0.37
SMARCB1-207ENST00000491967 PIK3R4Q99570 1358 aa12.77□□□□□ -0.37
SMARCB1-207ENST00000491967 NCOA3Q9Y6Q9 1424 aa12.77□□□□□ -0.37
SMARCB1-207ENST00000491967 SPHKAPQ2M3C7 1700 aa12.76□□□□□ -0.37
SMARCB1-207ENST00000491967 DIP2AQ14689 1571 aa12.76□□□□□ -0.37
SMARCB1-207ENST00000491967 HFM1A2PYH4 1435 aa12.75□□□□□ -0.37
SMARCB1-207ENST00000491967 PPP1R15AO75807 674 aaPredicted RBP12.73□□□□□ -0.37
SMARCB1-207ENST00000491967 NRXN3Q9Y4C0 1643 aa12.73□□□□□ -0.37
SMARCB1-207ENST00000491967 SETBP1Q9Y6X0 1596 aa12.73□□□□□ -0.37
SMARCB1-207ENST00000491967 TRPM2O94759 1503 aa12.72□□□□□ -0.37
SMARCB1-207ENST00000491967 RBM33Q96EV2 1170 aaKnown RBP12.72□□□□□ -0.37
SMARCB1-207ENST00000491967 MSH6P52701 1360 aa12.71□□□□□ -0.37
SMARCB1-207ENST00000491967 CHGAP10645 457 aaKnown RBP12.71□□□□□ -0.37
SMARCB1-207ENST00000491967 BCANQ96GW7 911 aa12.71□□□□□ -0.37
SMARCB1-207ENST00000491967 SLAIN2Q9P270 581 aa12.71□□□□□ -0.37
SMARCB1-207ENST00000491967 PTPRUQ92729 1446 aa12.71□□□□□ -0.38
SMARCB1-207ENST00000491967 ROBO1Q9Y6N7 1651 aa12.7□□□□□ -0.38
SMARCB1-207ENST00000491967 CLTCL1P53675 1640 aa12.7□□□□□ -0.38
SMARCB1-207ENST00000491967 NUTM2DQ5VT03 806 aaPredicted RBP12.7□□□□□ -0.38
SMARCB1-207ENST00000491967 XRN1Q8IZH2 1706 aaKnown RBP12.68□□□□□ -0.38
SMARCB1-207ENST00000491967 NEXMIFQ5QGS0 1516 aa12.68□□□□□ -0.38
SMARCB1-207ENST00000491967 C19orf44Q9H6X5 657 aa12.68□□□□□ -0.38
SMARCB1-207ENST00000491967 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.68□□□□□ -0.38
SMARCB1-207ENST00000491967 KIF1BO60333 1816 aa12.67□□□□□ -0.38
SMARCB1-207ENST00000491967 AMOTL2Q9Y2J4 779 aa12.67□□□□□ -0.38
SMARCB1-207ENST00000491967 SENP3Q9H4L4 574 aaPredicted RBP12.66□□□□□ -0.38
SMARCB1-207ENST00000491967 RGS17Q9UGC6 210 aaPredicted RBP12.66□□□□□ -0.38
SMARCB1-207ENST00000491967 METP08581 1390 aa12.66□□□□□ -0.38
SMARCB1-207ENST00000491967 CADPS2Q86UW7 1296 aa12.65□□□□□ -0.38
SMARCB1-207ENST00000491967 RPGRIP1LQ68CZ1 1315 aa12.64□□□□□ -0.39
SMARCB1-207ENST00000491967 DCCP43146 1447 aa12.64□□□□□ -0.39
SMARCB1-207ENST00000491967 PRAG1Q86YV5 1406 aa12.63□□□□□ -0.39
SMARCB1-207ENST00000491967 ZNF326Q5BKZ1 582 aaKnown RBP12.63□□□□□ -0.39
SMARCB1-207ENST00000491967 SLC4A1APQ9BWU0 796 aaKnown RBP12.63□□□□□ -0.39
SMARCB1-207ENST00000491967 COL16A1Q07092 1604 aaPredicted RBP12.62□□□□□ -0.39
SMARCB1-207ENST00000491967 SETD1AO15047 1707 aaKnown RBP12.62□□□□□ -0.39
SMARCB1-207ENST00000491967 TRIM52Q96A61 297 aa12.62□□□□□ -0.39
SMARCB1-207ENST00000491967 PHLPP1O60346 1717 aa12.62□□□□□ -0.39
SMARCB1-207ENST00000491967 AHDC1Q5TGY3 1603 aaPredicted RBP12.62□□□□□ -0.39
SMARCB1-207ENST00000491967 VGFO15240 615 aaPredicted RBP12.61□□□□□ -0.39
SMARCB1-207ENST00000491967 PPLO60437 1756 aa12.61□□□□□ -0.39
SMARCB1-207ENST00000491967 ATF3P18847 181 aa12.6□□□□□ -0.39
SMARCB1-207ENST00000491967 PHF23Q9BUL5 403 aaPredicted RBP12.6□□□□□ -0.39
SMARCB1-207ENST00000491967 ACIN1Q9UKV3 1341 aaKnown RBP12.6□□□□□ -0.39
SMARCB1-207ENST00000491967 JCADQ9P266 1359 aa12.59□□□□□ -0.39
SMARCB1-207ENST00000491967 MST1RQ04912 1400 aa12.58□□□□□ -0.4
SMARCB1-207ENST00000491967 SPATA31E1Q6ZUB1 1445 aa12.58□□□□□ -0.4
SMARCB1-207ENST00000491967 BRINP3Q76B58 766 aa12.58□□□□□ -0.4
SMARCB1-207ENST00000491967 C14orf37Q86TY3 774 aa12.58□□□□□ -0.4
SMARCB1-207ENST00000491967 ADGRL3Q9HAR2 1447 aa12.58□□□□□ -0.4
SMARCB1-207ENST00000491967 PTCH1Q13635 1447 aa12.57□□□□□ -0.4
SMARCB1-207ENST00000491967 MPHOSPH9Q99550 1183 aa12.57□□□□□ -0.4
SMARCB1-207ENST00000491967 SHPRHQ149N8 1683 aa12.56□□□□□ -0.4
SMARCB1-207ENST00000491967 SPATA31A6Q5VVP1 1343 aa12.56□□□□□ -0.4
SMARCB1-207ENST00000491967 NALCNQ8IZF0 1738 aa12.55□□□□□ -0.4
SMARCB1-207ENST00000491967 IFT172Q9UG01 1749 aa12.55□□□□□ -0.4
SMARCB1-207ENST00000491967 FOXD1Q16676 465 aa12.55□□□□□ -0.4
SMARCB1-207ENST00000491967 ASXL1Q8IXJ9 1541 aa12.55□□□□□ -0.4
SMARCB1-207ENST00000491967 LAMC1P11047 1609 aa12.55□□□□□ -0.4
SMARCB1-207ENST00000491967 NHSL1Q5SYE7 1610 aa12.55□□□□□ -0.4
SMARCB1-207ENST00000491967 ROBO2Q9HCK4 1378 aa12.55□□□□□ -0.4
SMARCB1-207ENST00000491967 SETD5Q9C0A6 1442 aa12.54□□□□□ -0.4
SMARCB1-207ENST00000491967 POTEAQ6S8J7 498 aa12.54□□□□□ -0.4
SMARCB1-207ENST00000491967 CCDC144AA2RUR9 1427 aa12.54□□□□□ -0.4
SMARCB1-207ENST00000491967 ANKRD30BQ9BXX2 1392 aa12.53□□□□□ -0.4
SMARCB1-207ENST00000491967 LRP6O75581 1613 aa12.52□□□□□ -0.4
SMARCB1-207ENST00000491967 ADGRF5Q8IZF2 1346 aa12.52□□□□□ -0.41
SMARCB1-207ENST00000491967 TECPR2O15040 1411 aa12.52□□□□□ -0.41
SMARCB1-207ENST00000491967 C1orf167Q5SNV9 1468 aa12.51□□□□□ -0.41
SMARCB1-207ENST00000491967 NRXN1Q9ULB1 1477 aa12.49□□□□□ -0.41
SMARCB1-207ENST00000491967 PIK3C2GO75747 1445 aa12.49□□□□□ -0.41
SMARCB1-207ENST00000491967 ABCC11Q96J66 1382 aa12.49□□□□□ -0.41
SMARCB1-207ENST00000491967 HRCP23327 699 aa12.49□□□□□ -0.41
SMARCB1-207ENST00000491967 LRPPRCP42704 1394 aaKnown RBP12.48□□□□□ -0.41
SMARCB1-207ENST00000491967 LRRC59Q96AG4 307 aaKnown RBP12.48□□□□□ -0.41
SMARCB1-207ENST00000491967 SIRT1Q96EB6 747 aa12.48□□□□□ -0.41
SMARCB1-207ENST00000491967 SOS2Q07890 1332 aaPredicted RBP12.47□□□□□ -0.41
SMARCB1-207ENST00000491967 RGL3Q3MIN7 710 aa12.47□□□□□ -0.41
SMARCB1-207ENST00000491967 CDC42BPGQ6DT37 1551 aa12.47□□□□□ -0.41
SMARCB1-207ENST00000491967 RAB3GAP2Q9H2M9 1393 aa12.46□□□□□ -0.41
SMARCB1-207ENST00000491967 KNDC1Q76NI1 1749 aa12.46□□□□□ -0.41
SMARCB1-207ENST00000491967 C14orf93Q9H972 538 aaKnown RBP12.46□□□□□ -0.41
SMARCB1-207ENST00000491967 PNPLA6Q8IY17 1366 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms