RNA–Protein interactions for RNA: ENST00000491860.1

NUP50-217, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-217ENST00000491860 ROBO1Q9Y6N7 1651 aa13.34□□□□□ -0.27
NUP50-217ENST00000491860 KCNA6P17658 529 aa13.33□□□□□ -0.28
NUP50-217ENST00000491860 POTEAQ6S8J7 498 aa13.33□□□□□ -0.28
NUP50-217ENST00000491860 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.33□□□□□ -0.28
NUP50-217ENST00000491860 TMEM94Q12767 1356 aa13.32□□□□□ -0.28
NUP50-217ENST00000491860 NWD1Q149M9 1564 aa13.32□□□□□ -0.28
NUP50-217ENST00000491860 NKTRP30414 1462 aaKnown RBP13.32□□□□□ -0.28
NUP50-217ENST00000491860 TMEM131LA2VDJ0 1609 aa13.31□□□□□ -0.28
NUP50-217ENST00000491860 NUP155O75694 1391 aa13.31□□□□□ -0.28
NUP50-217ENST00000491860 PLEKHG1Q9ULL1 1385 aa13.31□□□□□ -0.28
NUP50-217ENST00000491860 E9PCH4 1651 aa13.31□□□□□ -0.28
NUP50-217ENST00000491860 PPP1R15AO75807 674 aaPredicted RBP13.3□□□□□ -0.28
NUP50-217ENST00000491860 BCANQ96GW7 911 aa13.3□□□□□ -0.28
NUP50-217ENST00000491860 ZFYVE9O95405 1425 aa13.3□□□□□ -0.28
NUP50-217ENST00000491860 ITGAEP38570 1179 aa13.29□□□□□ -0.28
NUP50-217ENST00000491860 MYO5BQ9ULV0 1848 aa13.29□□□□□ -0.28
NUP50-217ENST00000491860 RRBP1Q9P2E9 1410 aaKnown RBP13.29□□□□□ -0.28
NUP50-217ENST00000491860 RIMS2Q9UQ26 1411 aa13.29□□□□□ -0.28
NUP50-217ENST00000491860 DIP2AQ14689 1571 aa13.28□□□□□ -0.28
NUP50-217ENST00000491860 SLC26A8Q96RN1 970 aa13.27□□□□□ -0.29
NUP50-217ENST00000491860 PHLPP1O60346 1717 aa13.26□□□□□ -0.29
NUP50-217ENST00000491860 CHGAP10645 457 aaKnown RBP13.26□□□□□ -0.29
NUP50-217ENST00000491860 PROSER2Q86WR7 435 aaPredicted RBP13.26□□□□□ -0.29
NUP50-217ENST00000491860 PIK3R4Q99570 1358 aa13.26□□□□□ -0.29
NUP50-217ENST00000491860 TBX22Q9Y458 520 aa13.26□□□□□ -0.29
NUP50-217ENST00000491860 CHD2O14647 1828 aaKnown RBP13.25□□□□□ -0.29
NUP50-217ENST00000491860 SETD1AO15047 1707 aaKnown RBP13.25□□□□□ -0.29
NUP50-217ENST00000491860 NCOA3Q9Y6Q9 1424 aa13.25□□□□□ -0.29
NUP50-217ENST00000491860 MSH6P52701 1360 aa13.25□□□□□ -0.29
NUP50-217ENST00000491860 JCADQ9P266 1359 aa13.25□□□□□ -0.29
NUP50-217ENST00000491860 SPHKAPQ2M3C7 1700 aa13.25□□□□□ -0.29
NUP50-217ENST00000491860 COL16A1Q07092 1604 aaPredicted RBP13.24□□□□□ -0.29
NUP50-217ENST00000491860 SLAIN2Q9P270 581 aa13.23□□□□□ -0.29
NUP50-217ENST00000491860 PPARGC1BQ86YN6 1023 aaKnown RBP13.22□□□□□ -0.29
NUP50-217ENST00000491860 SPATA31A6Q5VVP1 1343 aa13.2□□□□□ -0.3
NUP50-217ENST00000491860 TRPM2O94759 1503 aa13.2□□□□□ -0.3
NUP50-217ENST00000491860 NAIPQ13075 1403 aa13.2□□□□□ -0.3
NUP50-217ENST00000491860 SHPRHQ149N8 1683 aa13.19□□□□□ -0.3
NUP50-217ENST00000491860 AHDC1Q5TGY3 1603 aaPredicted RBP13.19□□□□□ -0.3
NUP50-217ENST00000491860 HFM1A2PYH4 1435 aa13.19□□□□□ -0.3
NUP50-217ENST00000491860 ACIN1Q9UKV3 1341 aaKnown RBP13.18□□□□□ -0.3
NUP50-217ENST00000491860 LRP6O75581 1613 aa13.18□□□□□ -0.3
NUP50-217ENST00000491860 RBM33Q96EV2 1170 aaKnown RBP13.18□□□□□ -0.3
NUP50-217ENST00000491860 ADAMTS13Q76LX8 1427 aa13.18□□□□□ -0.3
NUP50-217ENST00000491860 KIF1BO60333 1816 aa13.18□□□□□ -0.3
NUP50-217ENST00000491860 ZNF326Q5BKZ1 582 aaKnown RBP13.17□□□□□ -0.3
NUP50-217ENST00000491860 SETBP1Q9Y6X0 1596 aa13.16□□□□□ -0.3
NUP50-217ENST00000491860 ZNF772Q68DY9 489 aaPredicted RBP13.16□□□□□ -0.3
NUP50-217ENST00000491860 C14orf37Q86TY3 774 aa13.16□□□□□ -0.3
NUP50-217ENST00000491860 CADPS2Q86UW7 1296 aa13.16□□□□□ -0.3
NUP50-217ENST00000491860 UPF1Q92900 1129 aaKnown RBP eCLIP13.16□□□□□ -0.3
NUP50-217ENST00000491860 CDK12Q9NYV4 1490 aaPredicted RBP13.16□□□□□ -0.3
NUP50-217ENST00000491860 C19orf44Q9H6X5 657 aa13.15□□□□□ -0.3
NUP50-217ENST00000491860 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.14□□□□□ -0.31
NUP50-217ENST00000491860 TRIM52Q96A61 297 aa13.14□□□□□ -0.31
NUP50-217ENST00000491860 AMOTL2Q9Y2J4 779 aa13.14□□□□□ -0.31
NUP50-217ENST00000491860 DCCP43146 1447 aa13.13□□□□□ -0.31
NUP50-217ENST00000491860 CLTCL1P53675 1640 aa13.13□□□□□ -0.31
NUP50-217ENST00000491860 ATF3P18847 181 aa13.13□□□□□ -0.31
NUP50-217ENST00000491860 NUTM2DQ5VT03 806 aaPredicted RBP13.13□□□□□ -0.31
NUP50-217ENST00000491860 RPGRIP1LQ68CZ1 1315 aa13.13□□□□□ -0.31
NUP50-217ENST00000491860 VGFO15240 615 aaPredicted RBP13.12□□□□□ -0.31
NUP50-217ENST00000491860 NRXN3Q9Y4C0 1643 aa13.11□□□□□ -0.31
NUP50-217ENST00000491860 SLC4A1APQ9BWU0 796 aaKnown RBP13.11□□□□□ -0.31
NUP50-217ENST00000491860 NEXMIFQ5QGS0 1516 aa13.11□□□□□ -0.31
NUP50-217ENST00000491860 XRN1Q8IZH2 1706 aaKnown RBP13.1□□□□□ -0.31
NUP50-217ENST00000491860 MEX3CQ5U5Q3 659 aaKnown RBP13.1□□□□□ -0.31
NUP50-217ENST00000491860 PTPRUQ92729 1446 aa13.08□□□□□ -0.32
NUP50-217ENST00000491860 RXRBP28702 533 aa13.08□□□□□ -0.32
NUP50-217ENST00000491860 SETD5Q9C0A6 1442 aa13.07□□□□□ -0.32
NUP50-217ENST00000491860 NHSL1Q5SYE7 1610 aa13.07□□□□□ -0.32
NUP50-217ENST00000491860 BRINP3Q76B58 766 aa13.06□□□□□ -0.32
NUP50-217ENST00000491860 ASXL1Q8IXJ9 1541 aa13.05□□□□□ -0.32
NUP50-217ENST00000491860 METP08581 1390 aa13.05□□□□□ -0.32
NUP50-217ENST00000491860 CCDC144AA2RUR9 1427 aa13.05□□□□□ -0.32
NUP50-217ENST00000491860 PTCH1Q13635 1447 aa13.05□□□□□ -0.32
NUP50-217ENST00000491860 ADGRL3Q9HAR2 1447 aa13.05□□□□□ -0.32
NUP50-217ENST00000491860 PPLO60437 1756 aa13.04□□□□□ -0.32
NUP50-217ENST00000491860 PRAG1Q86YV5 1406 aa13.04□□□□□ -0.32
NUP50-217ENST00000491860 AFF2P51816 1311 aa13.03□□□□□ -0.32
NUP50-217ENST00000491860 MST1RQ04912 1400 aa13.02□□□□□ -0.33
NUP50-217ENST00000491860 MPHOSPH9Q99550 1183 aa13.01□□□□□ -0.33
NUP50-217ENST00000491860 ANKRD30BQ9BXX2 1392 aa13.01□□□□□ -0.33
NUP50-217ENST00000491860 RGS12O14924 1447 aa13.01□□□□□ -0.33
NUP50-217ENST00000491860 LAMC1P11047 1609 aa13□□□□□ -0.33
NUP50-217ENST00000491860 LRRC59Q96AG4 307 aaKnown RBP13□□□□□ -0.33
NUP50-217ENST00000491860 NALCNQ8IZF0 1738 aa12.99□□□□□ -0.33
NUP50-217ENST00000491860 NUTM2BA6NNL0 878 aaPredicted RBP12.99□□□□□ -0.33
NUP50-217ENST00000491860 NUTM2EB1AL46 878 aaPredicted RBP12.99□□□□□ -0.33
NUP50-217ENST00000491860 RBM6P78332 1123 aaKnown RBP12.99□□□□□ -0.33
NUP50-217ENST00000491860 NUTM2AQ8IVF1 878 aaPredicted RBP12.99□□□□□ -0.33
NUP50-217ENST00000491860 PNPLA6Q8IY17 1366 aa12.98□□□□□ -0.33
NUP50-217ENST00000491860 SRCAPQ6ZRS2 3230 aa12.98□□□□□ -0.33
NUP50-217ENST00000491860 SPATA31E1Q6ZUB1 1445 aa12.96□□□□□ -0.33
NUP50-217ENST00000491860 QTRT2Q9H974 415 aaKnown RBP12.96□□□□□ -0.33
NUP50-217ENST00000491860 IFT172Q9UG01 1749 aa12.96□□□□□ -0.34
NUP50-217ENST00000491860 ROBO2Q9HCK4 1378 aa12.95□□□□□ -0.34
NUP50-217ENST00000491860 C1orf167Q5SNV9 1468 aa12.95□□□□□ -0.34
NUP50-217ENST00000491860 FOXD1Q16676 465 aa12.94□□□□□ -0.34
NUP50-217ENST00000491860 NGLY1Q96IV0 654 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms