RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 CPLX1O14810 134 aa16.12■□□□□ 0.17
COL6A3-212ENST00000491769 CCER2I3L3R5 266 aa16.12■□□□□ 0.17
COL6A3-212ENST00000491769 FAM177BA6PVY3 158 aa16.12■□□□□ 0.17
COL6A3-212ENST00000491769 PATL2C9JE40 543 aaKnown RBP16.12■□□□□ 0.17
COL6A3-212ENST00000491769 FAM69CQ0P6D2 419 aa16.12■□□□□ 0.17
COL6A3-212ENST00000491769 TNNT3P45378 269 aaPredicted RBP16.11■□□□□ 0.17
COL6A3-212ENST00000491769 TIMELESSQ9UNS1 1208 aa16.11■□□□□ 0.17
COL6A3-212ENST00000491769 NLRP2Q9NX02 1062 aa16.11■□□□□ 0.17
COL6A3-212ENST00000491769 TMEM132AQ24JP5 1023 aa16.11■□□□□ 0.17
COL6A3-212ENST00000491769 OSCARQ8IYS5 282 aa16.11■□□□□ 0.17
COL6A3-212ENST00000491769 GOLGA6L19H0YKK7 550 aa16.1■□□□□ 0.17
COL6A3-212ENST00000491769 NUTM2GQ5VZR2 741 aa16.1■□□□□ 0.17
COL6A3-212ENST00000491769 ANO2Q9NQ90 1003 aa16.1■□□□□ 0.17
COL6A3-212ENST00000491769 RSPH4AQ5TD94 716 aa16.1■□□□□ 0.17
COL6A3-212ENST00000491769 PLIN1O60240 522 aa16.1■□□□□ 0.17
COL6A3-212ENST00000491769 FMN1Q68DA7 1419 aa16.09■□□□□ 0.17
COL6A3-212ENST00000491769 CGNL1Q0VF96 1302 aa16.09■□□□□ 0.17
COL6A3-212ENST00000491769 JPH4Q96JJ6 628 aa16.09■□□□□ 0.17
COL6A3-212ENST00000491769 BECN2A8MW95 431 aa16.09■□□□□ 0.17
COL6A3-212ENST00000491769 PAF1Q8N7H5 531 aa16.09■□□□□ 0.17
COL6A3-212ENST00000491769 WASHC2AQ641Q2 1341 aa16.09■□□□□ 0.17
COL6A3-212ENST00000491769 G3BP1Q13283 466 aaKnown RBP eCLIP16.09■□□□□ 0.17
COL6A3-212ENST00000491769 AIMP1Q12904 312 aaKnown RBP16.08■□□□□ 0.17
COL6A3-212ENST00000491769 GOLGA6L3A6NEY3 463 aa16.08■□□□□ 0.16
COL6A3-212ENST00000491769 KANK4Q5T7N3 995 aaPredicted RBP16.08■□□□□ 0.16
COL6A3-212ENST00000491769 NUTM2BA6NNL0 878 aaPredicted RBP16.08■□□□□ 0.16
COL6A3-212ENST00000491769 NUTM2EB1AL46 878 aaPredicted RBP16.08■□□□□ 0.16
COL6A3-212ENST00000491769 NUTM2AQ8IVF1 878 aaPredicted RBP16.08■□□□□ 0.16
COL6A3-212ENST00000491769 CT47A1Q5JQC4 288 aaPredicted RBP16.08■□□□□ 0.16
COL6A3-212ENST00000491769 RUFY2Q8WXA3 655 aa16.08■□□□□ 0.16
COL6A3-212ENST00000491769 BAZ1AQ9NRL2 1556 aaPredicted RBP16.07■□□□□ 0.16
COL6A3-212ENST00000491769 FOSBP53539 338 aa16.07■□□□□ 0.16
COL6A3-212ENST00000491769 ODF2Q5BJF6 829 aa16.07■□□□□ 0.16
COL6A3-212ENST00000491769 CCDC70Q6NSX1 233 aa16.07■□□□□ 0.16
COL6A3-212ENST00000491769 UACAQ9BZF9 1416 aa16.07■□□□□ 0.16
COL6A3-212ENST00000491769 RIC3Q7Z5B4 369 aa16.06■□□□□ 0.16
COL6A3-212ENST00000491769 NEUROD6Q96NK8 337 aa16.06■□□□□ 0.16
COL6A3-212ENST00000491769 WWC2Q6AWC2 1192 aa16.06■□□□□ 0.16
COL6A3-212ENST00000491769 ANKRD20A12PQ8NF67 263 aa16.06■□□□□ 0.16
COL6A3-212ENST00000491769 PANK3Q9H999 370 aa16.06■□□□□ 0.16
COL6A3-212ENST00000491769 IPO7O95373 1038 aaKnown RBP16.05■□□□□ 0.16
COL6A3-212ENST00000491769 FKBP5Q13451 457 aaPredicted RBP16.05■□□□□ 0.16
COL6A3-212ENST00000491769 ZKSCAN1P17029 563 aaPredicted RBP16.05■□□□□ 0.16
COL6A3-212ENST00000491769 NLRP13Q86W25 1043 aa16.04■□□□□ 0.16
COL6A3-212ENST00000491769 CCDC144AA2RUR9 1427 aa16.04■□□□□ 0.16
COL6A3-212ENST00000491769 CCDC18Q5T9S5 1454 aa16.04■□□□□ 0.16
COL6A3-212ENST00000491769 ZFYVE27Q5T4F4 411 aa16.04■□□□□ 0.16
COL6A3-212ENST00000491769 L3MBTL2Q969R5 705 aa16.04■□□□□ 0.16
COL6A3-212ENST00000491769 STRN4Q9NRL3 753 aa16.04■□□□□ 0.16
COL6A3-212ENST00000491769 WASHC4Q2M389 1173 aa16.03■□□□□ 0.16
COL6A3-212ENST00000491769 RBM42Q9BTD8 480 aaKnown RBP16.03■□□□□ 0.16
COL6A3-212ENST00000491769 DEKP35659 375 aaKnown RBP16.03■□□□□ 0.16
COL6A3-212ENST00000491769 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL6A3-212ENST00000491769 ATP6V1DQ9Y5K8 247 aa16.03■□□□□ 0.16
COL6A3-212ENST00000491769 MYO15BQ96JP2 1530 aa16.02■□□□□ 0.15
COL6A3-212ENST00000491769 DIAPH1O60610 1272 aaKnown RBP16.02■□□□□ 0.15
COL6A3-212ENST00000491769 KDM4AO75164 1064 aa16.02■□□□□ 0.15
COL6A3-212ENST00000491769 ZKSCAN2Q63HK3 967 aa16.01■□□□□ 0.15
COL6A3-212ENST00000491769 NAP1L1P55209 391 aaKnown RBP16.01■□□□□ 0.15
COL6A3-212ENST00000491769 TSPYL4Q9UJ04 414 aa16.01■□□□□ 0.15
COL6A3-212ENST00000491769 RAB3GAP2Q9H2M9 1393 aa16.01■□□□□ 0.15
COL6A3-212ENST00000491769 PIP4K2BP78356 416 aa16■□□□□ 0.15
COL6A3-212ENST00000491769 HOOK1Q9UJC3 728 aaKnown RBP16■□□□□ 0.15
COL6A3-212ENST00000491769 EPS15P42566 896 aa15.99■□□□□ 0.15
COL6A3-212ENST00000491769 SAFBQ15424 915 aaKnown RBP eCLIP15.99■□□□□ 0.15
COL6A3-212ENST00000491769 RNF20Q5VTR2 975 aa15.99■□□□□ 0.15
COL6A3-212ENST00000491769 FHOD3Q2V2M9 1422 aa15.98■□□□□ 0.15
COL6A3-212ENST00000491769 RIPK4P57078 832 aa15.98■□□□□ 0.15
COL6A3-212ENST00000491769 ST20-MTHFSA0A0A6YYL1 179 aa15.97■□□□□ 0.15
COL6A3-212ENST00000491769 RALYLQ86SE5 291 aaKnown RBP15.97■□□□□ 0.15
COL6A3-212ENST00000491769 BICD2Q8TD16 824 aa15.97■□□□□ 0.15
COL6A3-212ENST00000491769 KIF6Q6ZMV9 814 aa15.97■□□□□ 0.15
COL6A3-212ENST00000491769 ESCO1Q5FWF5 840 aa15.97■□□□□ 0.15
COL6A3-212ENST00000491769 ZNF592Q92610 1267 aa15.97■□□□□ 0.15
COL6A3-212ENST00000491769 PHLDB1Q86UU1 1377 aa15.97■□□□□ 0.15
COL6A3-212ENST00000491769 KIF15Q9NS87 1388 aa15.96■□□□□ 0.15
COL6A3-212ENST00000491769 PTPRGP23470 1445 aa15.96■□□□□ 0.15
COL6A3-212ENST00000491769 SETQ01105 290 aaPredicted RBP15.96■□□□□ 0.15
COL6A3-212ENST00000491769 HMOX1P09601 288 aa15.96■□□□□ 0.15
COL6A3-212ENST00000491769 BRMS1Q9HCU9 246 aa15.96■□□□□ 0.15
COL6A3-212ENST00000491769 ATP2B2Q01814 1243 aa15.96■□□□□ 0.14
COL6A3-212ENST00000491769 PROSER2Q86WR7 435 aaPredicted RBP15.95■□□□□ 0.14
COL6A3-212ENST00000491769 HSP90AB2PQ58FF8 381 aa15.94■□□□□ 0.14
COL6A3-212ENST00000491769 DDX49Q9Y6V7 483 aaKnown RBP15.94■□□□□ 0.14
COL6A3-212ENST00000491769 NLRP6P59044 892 aa15.94■□□□□ 0.14
COL6A3-212ENST00000491769 RBM5P52756 815 aaKnown RBP eCLIP15.93■□□□□ 0.14
COL6A3-212ENST00000491769 MYBBP1AQ9BQG0 1328 aaKnown RBP15.93■□□□□ 0.14
COL6A3-212ENST00000491769 RBM19Q9Y4C8 960 aaKnown RBP15.93■□□□□ 0.14
COL6A3-212ENST00000491769 PDE3BQ13370 1112 aa15.93■□□□□ 0.14
COL6A3-212ENST00000491769 VPS37CA5D8V6 355 aaPredicted RBP15.93■□□□□ 0.14
COL6A3-212ENST00000491769 E9PSI1 815 aa15.93■□□□□ 0.14
COL6A3-212ENST00000491769 COG6Q9Y2V7 657 aa15.93■□□□□ 0.14
COL6A3-212ENST00000491769 VPS8Q8N3P4 1428 aa15.93■□□□□ 0.14
COL6A3-212ENST00000491769 GPRASP1Q5JY77 1395 aa15.92■□□□□ 0.14
COL6A3-212ENST00000491769 IBSPP21815 317 aaPredicted RBP15.92■□□□□ 0.14
COL6A3-212ENST00000491769 API5Q9BZZ5 524 aaKnown RBP15.92■□□□□ 0.14
COL6A3-212ENST00000491769 DDX11L8A8MPP1 907 aa15.92■□□□□ 0.14
COL6A3-212ENST00000491769 REC8O95072 547 aa15.92■□□□□ 0.14
COL6A3-212ENST00000491769 ERC2O15083 957 aa15.91■□□□□ 0.14
COL6A3-212ENST00000491769 OFD1O75665 1012 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms