RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 ZFYVE9O95405 1425 aa13.84□□□□□ -0.19
BRCA1-219ENST00000491747 KIF1BO60333 1816 aa13.84□□□□□ -0.19
BRCA1-219ENST00000491747 STRCP1A6NGW2 1772 aa13.83□□□□□ -0.2
BRCA1-219ENST00000491747 RIMS2Q9UQ26 1411 aa13.82□□□□□ -0.2
BRCA1-219ENST00000491747 EID1Q9Y6B2 187 aa13.82□□□□□ -0.2
BRCA1-219ENST00000491747 NUTM2DQ5VT03 806 aaPredicted RBP13.81□□□□□ -0.2
BRCA1-219ENST00000491747 CERKQ8TCT0 537 aa13.81□□□□□ -0.2
BRCA1-219ENST00000491747 SCAF1Q9H7N4 1312 aaKnown RBP13.8□□□□□ -0.2
BRCA1-219ENST00000491747 SENP3Q9H4L4 574 aaPredicted RBP13.8□□□□□ -0.2
BRCA1-219ENST00000491747 ACIN1Q9UKV3 1341 aaKnown RBP13.79□□□□□ -0.2
BRCA1-219ENST00000491747 NEXMIFQ5QGS0 1516 aa13.77□□□□□ -0.21
BRCA1-219ENST00000491747 SLC26A8Q96RN1 970 aa13.76□□□□□ -0.21
BRCA1-219ENST00000491747 ZNF326Q5BKZ1 582 aaKnown RBP13.76□□□□□ -0.21
BRCA1-219ENST00000491747 CCER1Q8TC90 406 aaPredicted RBP13.76□□□□□ -0.21
BRCA1-219ENST00000491747 PLEKHG1Q9ULL1 1385 aa13.76□□□□□ -0.21
BRCA1-219ENST00000491747 PPP1R15AO75807 674 aaPredicted RBP13.75□□□□□ -0.21
BRCA1-219ENST00000491747 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.75□□□□□ -0.21
BRCA1-219ENST00000491747 PPLO60437 1756 aa13.75□□□□□ -0.21
BRCA1-219ENST00000491747 NRXN3Q9Y4C0 1643 aa13.74□□□□□ -0.21
BRCA1-219ENST00000491747 CCDC144AA2RUR9 1427 aa13.74□□□□□ -0.21
BRCA1-219ENST00000491747 HDGFP51858 240 aaKnown RBP13.74□□□□□ -0.21
BRCA1-219ENST00000491747 ILDR1Q86SU0 546 aaPredicted RBP13.74□□□□□ -0.21
BRCA1-219ENST00000491747 ADAMTS13Q76LX8 1427 aa13.73□□□□□ -0.21
BRCA1-219ENST00000491747 CPS1P31327 1500 aa13.73□□□□□ -0.21
BRCA1-219ENST00000491747 BCANQ96GW7 911 aa13.73□□□□□ -0.21
BRCA1-219ENST00000491747 CHD2O14647 1828 aaKnown RBP13.73□□□□□ -0.21
BRCA1-219ENST00000491747 XIRP1Q702N8 1843 aaKnown RBP13.73□□□□□ -0.21
BRCA1-219ENST00000491747 IFT172Q9UG01 1749 aa13.73□□□□□ -0.21
BRCA1-219ENST00000491747 SPATA31E1Q6ZUB1 1445 aa13.72□□□□□ -0.21
BRCA1-219ENST00000491747 ANKRD30BQ9BXX2 1392 aa13.72□□□□□ -0.21
BRCA1-219ENST00000491747 FBXO41Q8TF61 875 aa13.71□□□□□ -0.21
BRCA1-219ENST00000491747 IQSEC2Q5JU85 1478 aa13.7□□□□□ -0.22
BRCA1-219ENST00000491747 LRRC7Q96NW7 1537 aa13.7□□□□□ -0.22
BRCA1-219ENST00000491747 SETBP1Q9Y6X0 1596 aa13.7□□□□□ -0.22
BRCA1-219ENST00000491747 RGL3Q3MIN7 710 aa13.69□□□□□ -0.22
BRCA1-219ENST00000491747 NWD1Q149M9 1564 aa13.69□□□□□ -0.22
BRCA1-219ENST00000491747 DIP2AQ14689 1571 aa13.69□□□□□ -0.22
BRCA1-219ENST00000491747 TBX22Q9Y458 520 aa13.69□□□□□ -0.22
BRCA1-219ENST00000491747 SETD1AO15047 1707 aaKnown RBP13.68□□□□□ -0.22
BRCA1-219ENST00000491747 KCNA6P17658 529 aa13.68□□□□□ -0.22
BRCA1-219ENST00000491747 RPGRIP1LQ68CZ1 1315 aa13.67□□□□□ -0.22
BRCA1-219ENST00000491747 PTPRUQ92729 1446 aa13.66□□□□□ -0.22
BRCA1-219ENST00000491747 VGFO15240 615 aaPredicted RBP13.65□□□□□ -0.22
BRCA1-219ENST00000491747 RBM33Q96EV2 1170 aaKnown RBP13.65□□□□□ -0.22
BRCA1-219ENST00000491747 ALKQ9UM73 1620 aa13.65□□□□□ -0.22
BRCA1-219ENST00000491747 ADGRF5Q8IZF2 1346 aa13.65□□□□□ -0.22
BRCA1-219ENST00000491747 METP08581 1390 aa13.64□□□□□ -0.23
BRCA1-219ENST00000491747 XRN1Q8IZH2 1706 aaKnown RBP13.63□□□□□ -0.23
BRCA1-219ENST00000491747 NKTRP30414 1462 aaKnown RBP13.63□□□□□ -0.23
BRCA1-219ENST00000491747 PIK3R4Q99570 1358 aa13.62□□□□□ -0.23
BRCA1-219ENST00000491747 PROSER2Q86WR7 435 aaPredicted RBP13.62□□□□□ -0.23
BRCA1-219ENST00000491747 TMEM94Q12767 1356 aa13.61□□□□□ -0.23
BRCA1-219ENST00000491747 UBAP1LF5GYI3 381 aa13.61□□□□□ -0.23
BRCA1-219ENST00000491747 DIEXFQ68CQ4 756 aaKnown RBP13.61□□□□□ -0.23
BRCA1-219ENST00000491747 AMOTL2Q9Y2J4 779 aa13.61□□□□□ -0.23
BRCA1-219ENST00000491747 DHX57Q6P158 1386 aaKnown RBP13.6□□□□□ -0.23
BRCA1-219ENST00000491747 CENPBP07199 599 aaPredicted RBP13.6□□□□□ -0.23
BRCA1-219ENST00000491747 PIK3C2GO75747 1445 aa13.59□□□□□ -0.23
BRCA1-219ENST00000491747 NRXN1Q9ULB1 1477 aa13.59□□□□□ -0.23
BRCA1-219ENST00000491747 MYOM2P54296 1465 aa13.59□□□□□ -0.23
BRCA1-219ENST00000491747 ASXL1Q8IXJ9 1541 aa13.58□□□□□ -0.24
BRCA1-219ENST00000491747 NEUROD1Q13562 356 aa13.57□□□□□ -0.24
BRCA1-219ENST00000491747 SIN3AQ96ST3 1273 aa13.57□□□□□ -0.24
BRCA1-219ENST00000491747 DCAF11Q8TEB1 546 aa13.56□□□□□ -0.24
BRCA1-219ENST00000491747 KDM2AQ9Y2K7 1162 aa13.56□□□□□ -0.24
BRCA1-219ENST00000491747 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.56□□□□□ -0.24
BRCA1-219ENST00000491747 TOM1O60784 492 aa13.56□□□□□ -0.24
BRCA1-219ENST00000491747 PIP4K2BP78356 416 aa13.56□□□□□ -0.24
BRCA1-219ENST00000491747 TMEM132EQ6IEE7 984 aa13.54□□□□□ -0.24
BRCA1-219ENST00000491747 CFAP70Q5T0N1 1121 aa13.54□□□□□ -0.24
BRCA1-219ENST00000491747 C14orf93Q9H972 538 aaKnown RBP13.54□□□□□ -0.24
BRCA1-219ENST00000491747 NALCNQ8IZF0 1738 aa13.53□□□□□ -0.24
BRCA1-219ENST00000491747 LAMC1P11047 1609 aa13.53□□□□□ -0.24
BRCA1-219ENST00000491747 NCOA3Q9Y6Q9 1424 aa13.53□□□□□ -0.24
BRCA1-219ENST00000491747 ROBO2Q9HCK4 1378 aa13.53□□□□□ -0.24
BRCA1-219ENST00000491747 MSH6P52701 1360 aa13.52□□□□□ -0.25
BRCA1-219ENST00000491747 KNDC1Q76NI1 1749 aa13.52□□□□□ -0.25
BRCA1-219ENST00000491747 PRAG1Q86YV5 1406 aa13.52□□□□□ -0.25
BRCA1-219ENST00000491747 PTCH1Q13635 1447 aa13.51□□□□□ -0.25
BRCA1-219ENST00000491747 STK26Q9P289 416 aa13.51□□□□□ -0.25
BRCA1-219ENST00000491747 C14orf37Q86TY3 774 aa13.5□□□□□ -0.25
BRCA1-219ENST00000491747 ADGRB1O14514 1584 aa13.5□□□□□ -0.25
BRCA1-219ENST00000491747 LRPPRCP42704 1394 aaKnown RBP13.5□□□□□ -0.25
BRCA1-219ENST00000491747 ROBO1Q9Y6N7 1651 aa13.49□□□□□ -0.25
BRCA1-219ENST00000491747 YTHDC2Q9H6S0 1430 aaKnown RBP13.49□□□□□ -0.25
BRCA1-219ENST00000491747 C19orf44Q9H6X5 657 aa13.49□□□□□ -0.25
BRCA1-219ENST00000491747 TECPR2O15040 1411 aa13.49□□□□□ -0.25
BRCA1-219ENST00000491747 L3MBTL2Q969R5 705 aa13.49□□□□□ -0.25
BRCA1-219ENST00000491747 ABCC11Q96J66 1382 aa13.48□□□□□ -0.25
BRCA1-219ENST00000491747 HSPA1LP34931 641 aa13.47□□□□□ -0.25
BRCA1-219ENST00000491747 WAPLQ7Z5K2 1190 aa13.47□□□□□ -0.25
BRCA1-219ENST00000491747 STAC3Q96MF2 364 aa13.47□□□□□ -0.25
BRCA1-219ENST00000491747 GTF3C3Q9Y5Q9 886 aa13.47□□□□□ -0.25
BRCA1-219ENST00000491747 ADGRL3Q9HAR2 1447 aa13.47□□□□□ -0.25
BRCA1-219ENST00000491747 PLEKHH1Q9ULM0 1364 aa13.47□□□□□ -0.25
BRCA1-219ENST00000491747 SLAIN2Q9P270 581 aa13.47□□□□□ -0.25
BRCA1-219ENST00000491747 KIAA1210Q9ULL0 1709 aa13.46□□□□□ -0.25
BRCA1-219ENST00000491747 FAM135BQ49AJ0 1406 aa13.46□□□□□ -0.25
BRCA1-219ENST00000491747 ZNF316A6NFI3 1004 aaPredicted RBP13.46□□□□□ -0.25
BRCA1-219ENST00000491747 DCCP43146 1447 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms