RNA–Protein interactions for RNA: ENST00000490663.1

C4A-256, Transcript of complement C4A (Rodgers blood group), human

TSL 2

Gene C4A, Length 524 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C4A-256	ENST00000490663	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	27.62	■■■□□ 2.01
C4A-256	ENST00000490663	IFT172	Q9UG01	1749 aa		27.6	■■■□□ 2.01
C4A-256	ENST00000490663	NUTM2D	Q5VT03	806 aa	Predicted RBP	27.59	■■■□□ 2.01
C4A-256	ENST00000490663	NEXMIF	Q5QGS0	1516 aa		27.57	■■■□□ 2
C4A-256	ENST00000490663	EID1	Q9Y6B2	187 aa		27.57	■■■□□ 2
C4A-256	ENST00000490663	XIRP1	Q702N8	1843 aa	Known RBP	27.57	■■■□□ 2
C4A-256	ENST00000490663	NRXN3	Q9Y4C0	1643 aa		27.55	■■■□□ 2
C4A-256	ENST00000490663	CHD2	O14647	1828 aa	Known RBP	27.54	■■■□□ 2
C4A-256	ENST00000490663	ZNF326	Q5BKZ1	582 aa	Known RBP	27.51	■■□□□ 1.99
C4A-256	ENST00000490663	CCDC144A	A2RUR9	1427 aa		27.5	■■□□□ 1.99
C4A-256	ENST00000490663	PPP1R15A	O75807	674 aa	Predicted RBP	27.49	■■□□□ 1.99
C4A-256	ENST00000490663	CERK	Q8TCT0	537 aa		27.48	■■□□□ 1.99
C4A-256	ENST00000490663	BCAN	Q96GW7	911 aa		27.47	■■□□□ 1.99
C4A-256	ENST00000490663	SETD1A	O15047	1707 aa	Known RBP	27.47	■■□□□ 1.99
C4A-256	ENST00000490663	SLC26A8	Q96RN1	970 aa		27.46	■■□□□ 1.99
C4A-256	ENST00000490663	PLEKHG1	Q9ULL1	1385 aa		27.46	■■□□□ 1.99
C4A-256	ENST00000490663	ACIN1	Q9UKV3	1341 aa	Known RBP	27.44	■■□□□ 1.98
C4A-256	ENST00000490663	TRIM26	Q12899	539 aa	Predicted RBP	27.44	■■□□□ 1.98
C4A-256	ENST00000490663	CPS1	P31327	1500 aa		27.43	■■□□□ 1.98
C4A-256	ENST00000490663	NWD1	Q149M9	1564 aa		27.42	■■□□□ 1.98
C4A-256	ENST00000490663	DIP2A	Q14689	1571 aa		27.41	■■□□□ 1.98
C4A-256	ENST00000490663	SETBP1	Q9Y6X0	1596 aa		27.41	■■□□□ 1.98
C4A-256	ENST00000490663	HRC	P23327	699 aa		27.41	■■□□□ 1.98
C4A-256	ENST00000490663	SPATA31E1	Q6ZUB1	1445 aa		27.4	■■□□□ 1.98
C4A-256	ENST00000490663	ADAMTS13	Q76LX8	1427 aa		27.4	■■□□□ 1.98
C4A-256	ENST00000490663	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	27.39	■■□□□ 1.98
C4A-256	ENST00000490663	ANKRD30B	Q9BXX2	1392 aa		27.36	■■□□□ 1.97
C4A-256	ENST00000490663	HDGF	P51858	240 aa	Known RBP	27.36	■■□□□ 1.97
C4A-256	ENST00000490663	RGL3	Q3MIN7	710 aa		27.36	■■□□□ 1.97
C4A-256	ENST00000490663	LRRC7	Q96NW7	1537 aa		27.36	■■□□□ 1.97
C4A-256	ENST00000490663	XRN1	Q8IZH2	1706 aa	Known RBP	27.33	■■□□□ 1.96
C4A-256	ENST00000490663	ILDR1	Q86SU0	546 aa	Predicted RBP	27.32	■■□□□ 1.96
C4A-256	ENST00000490663	IQSEC2	Q5JU85	1478 aa		27.32	■■□□□ 1.96
C4A-256	ENST00000490663	ALK	Q9UM73	1620 aa		27.3	■■□□□ 1.96
C4A-256	ENST00000490663	PTPRU	Q92729	1446 aa		27.26	■■□□□ 1.95
C4A-256	ENST00000490663	FBXO41	Q8TF61	875 aa		27.26	■■□□□ 1.95
C4A-256	ENST00000490663	NKTR	P30414	1462 aa	Known RBP	27.25	■■□□□ 1.95
C4A-256	ENST00000490663	RBM33	Q96EV2	1170 aa	Known RBP	27.25	■■□□□ 1.95
C4A-256	ENST00000490663	RPGRIP1L	Q68CZ1	1315 aa		27.23	■■□□□ 1.95
C4A-256	ENST00000490663	ADGRF5	Q8IZF2	1346 aa		27.23	■■□□□ 1.95
C4A-256	ENST00000490663	TBX22	Q9Y458	520 aa		27.23	■■□□□ 1.95
C4A-256	ENST00000490663	KCNA6	P17658	529 aa		27.22	■■□□□ 1.95
C4A-256	ENST00000490663	MET	P08581	1390 aa		27.22	■■□□□ 1.95
C4A-256	ENST00000490663	DHX57	Q6P158	1386 aa	Known RBP	27.21	■■□□□ 1.95
C4A-256	ENST00000490663	VGF	O15240	615 aa	Predicted RBP	27.2	■■□□□ 1.94
C4A-256	ENST00000490663	ASXL1	Q8IXJ9	1541 aa		27.2	■■□□□ 1.94
C4A-256	ENST00000490663	NALCN	Q8IZF0	1738 aa		27.19	■■□□□ 1.94
C4A-256	ENST00000490663	LAMC1	P11047	1609 aa		27.19	■■□□□ 1.94
C4A-256	ENST00000490663	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	27.19	■■□□□ 1.94
C4A-256	ENST00000490663	TMEM94	Q12767	1356 aa		27.18	■■□□□ 1.94
C4A-256	ENST00000490663	MYOM2	P54296	1465 aa		27.18	■■□□□ 1.94
C4A-256	ENST00000490663	PROSER2	Q86WR7	435 aa	Predicted RBP	27.17	■■□□□ 1.94
C4A-256	ENST00000490663	KNDC1	Q76NI1	1749 aa		27.16	■■□□□ 1.94
C4A-256	ENST00000490663	UBAP1L	F5GYI3	381 aa		27.16	■■□□□ 1.94
C4A-256	ENST00000490663	PIK3C2G	O75747	1445 aa		27.16	■■□□□ 1.94
C4A-256	ENST00000490663	PIK3R4	Q99570	1358 aa		27.15	■■□□□ 1.94
C4A-256	ENST00000490663	PCGF6	Q9BYE7	350 aa		27.14	■■□□□ 1.94
C4A-256	ENST00000490663	AMOTL2	Q9Y2J4	779 aa		27.13	■■□□□ 1.93
C4A-256	ENST00000490663	NRXN1	Q9ULB1	1477 aa		27.13	■■□□□ 1.93
C4A-256	ENST00000490663	SIN3A	Q96ST3	1273 aa		27.1	■■□□□ 1.93
C4A-256	ENST00000490663	KDM2A	Q9Y2K7	1162 aa		27.1	■■□□□ 1.93
C4A-256	ENST00000490663	SCAF1	Q9H7N4	1312 aa	Known RBP	27.09	■■□□□ 1.93
C4A-256	ENST00000490663	PIP4K2B	P78356	416 aa		27.07	■■□□□ 1.92
C4A-256	ENST00000490663	DCAF11	Q8TEB1	546 aa		27.07	■■□□□ 1.92
C4A-256	ENST00000490663	ROBO1	Q9Y6N7	1651 aa		27.05	■■□□□ 1.92
C4A-256	ENST00000490663	NEUROD1	Q13562	356 aa		27.03	■■□□□ 1.92
C4A-256	ENST00000490663	TMEM132E	Q6IEE7	984 aa		27.03	■■□□□ 1.92
C4A-256	ENST00000490663	KIAA1210	Q9ULL0	1709 aa		27.02	■■□□□ 1.92
C4A-256	ENST00000490663	CFAP70	Q5T0N1	1121 aa		27.02	■■□□□ 1.92
C4A-256	ENST00000490663	C14orf37	Q86TY3	774 aa		27.01	■■□□□ 1.91
C4A-256	ENST00000490663	MSH6	P52701	1360 aa		27	■■□□□ 1.91
C4A-256	ENST00000490663	ROBO2	Q9HCK4	1378 aa		27	■■□□□ 1.91
C4A-256	ENST00000490663	TOM1	O60784	492 aa		27	■■□□□ 1.91
C4A-256	ENST00000490663	STK26	Q9P289	416 aa		27	■■□□□ 1.91
C4A-256	ENST00000490663	ARHGEF28	Q8N1W1	1705 aa	Known RBP	26.99	■■□□□ 1.91
C4A-256	ENST00000490663	PTCH1	Q13635	1447 aa		26.99	■■□□□ 1.91
C4A-256	ENST00000490663	ADGRB1	O14514	1584 aa		26.98	■■□□□ 1.91
C4A-256	ENST00000490663	RGPD8	O14715	1765 aa	Predicted RBP	26.98	■■□□□ 1.91
C4A-256	ENST00000490663	YTHDC2	Q9H6S0	1430 aa	Known RBP	26.96	■■□□□ 1.91
C4A-256	ENST00000490663	TRPM1	Q7Z4N2	1603 aa		26.95	■■□□□ 1.91
C4A-256	ENST00000490663	C14orf93	Q9H972	538 aa	Known RBP	26.95	■■□□□ 1.9
C4A-256	ENST00000490663	PRAG1	Q86YV5	1406 aa		26.94	■■□□□ 1.9
C4A-256	ENST00000490663	LRPPRC	P42704	1394 aa	Known RBP	26.94	■■□□□ 1.9
C4A-256	ENST00000490663	ADGRL3	Q9HAR2	1447 aa		26.93	■■□□□ 1.9
C4A-256	ENST00000490663	PHLPP1	O60346	1717 aa		26.92	■■□□□ 1.9
C4A-256	ENST00000490663	NCOA3	Q9Y6Q9	1424 aa		26.91	■■□□□ 1.9
C4A-256	ENST00000490663	PLEKHH1	Q9ULM0	1364 aa		26.91	■■□□□ 1.9
C4A-256	ENST00000490663	TECPR2	O15040	1411 aa		26.9	■■□□□ 1.9
C4A-256	ENST00000490663	L3MBTL2	Q969R5	705 aa		26.9	■■□□□ 1.9
C4A-256	ENST00000490663	FMN2	Q9NZ56	1722 aa		26.89	■■□□□ 1.9
C4A-256	ENST00000490663	WAPL	Q7Z5K2	1190 aa		26.87	■■□□□ 1.89
C4A-256	ENST00000490663	ABCC11	Q96J66	1382 aa		26.85	■■□□□ 1.89
C4A-256	ENST00000490663	CDC42BPG	Q6DT37	1551 aa		26.85	■■□□□ 1.89
C4A-256	ENST00000490663	HSPA1L	P34931	641 aa		26.85	■■□□□ 1.89
C4A-256	ENST00000490663	C19orf44	Q9H6X5	657 aa		26.85	■■□□□ 1.89
C4A-256	ENST00000490663	DLC1	Q96QB1	1528 aa		26.84	■■□□□ 1.89
C4A-256	ENST00000490663	DCC	P43146	1447 aa		26.83	■■□□□ 1.89
C4A-256	ENST00000490663	ATF3	P18847	181 aa		26.83	■■□□□ 1.89
C4A-256	ENST00000490663	NHSL1	Q5SYE7	1610 aa		26.83	■■□□□ 1.88
C4A-256	ENST00000490663	MST1R	Q04912	1400 aa		26.82	■■□□□ 1.88

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms