RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 NEURL4Q96JN8 1562 aa15.9■□□□□ 0.14
VPS13D-210ENST00000489961 ZFYVE9O95405 1425 aa15.89■□□□□ 0.13
VPS13D-210ENST00000489961 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.89■□□□□ 0.13
VPS13D-210ENST00000489961 MED14O60244 1454 aa15.89■□□□□ 0.13
VPS13D-210ENST00000489961 PPP1R15AO75807 674 aaPredicted RBP15.88■□□□□ 0.13
VPS13D-210ENST00000489961 LTKP29376 864 aa15.88■□□□□ 0.13
VPS13D-210ENST00000489961 IQGAP1P46940 1657 aa15.88■□□□□ 0.13
VPS13D-210ENST00000489961 NPHP4O75161 1426 aaPredicted RBP15.87■□□□□ 0.13
VPS13D-210ENST00000489961 SPATA31E1Q6ZUB1 1445 aa15.86■□□□□ 0.13
VPS13D-210ENST00000489961 RPGRIP1LQ68CZ1 1315 aa15.86■□□□□ 0.13
VPS13D-210ENST00000489961 NEXMIFQ5QGS0 1516 aa15.85■□□□□ 0.13
VPS13D-210ENST00000489961 PPLO60437 1756 aa15.85■□□□□ 0.13
VPS13D-210ENST00000489961 RGL3Q3MIN7 710 aa15.84■□□□□ 0.13
VPS13D-210ENST00000489961 NUTM2DQ5VT03 806 aaPredicted RBP15.83■□□□□ 0.12
VPS13D-210ENST00000489961 BCANQ96GW7 911 aa15.83■□□□□ 0.12
VPS13D-210ENST00000489961 PLEKHG1Q9ULL1 1385 aa15.83■□□□□ 0.12
VPS13D-210ENST00000489961 IFT172Q9UG01 1749 aa15.82■□□□□ 0.12
VPS13D-210ENST00000489961 VGFO15240 615 aaPredicted RBP15.81■□□□□ 0.12
VPS13D-210ENST00000489961 SLC26A8Q96RN1 970 aa15.77■□□□□ 0.12
VPS13D-210ENST00000489961 SIN3AQ96ST3 1273 aa15.77■□□□□ 0.12
VPS13D-210ENST00000489961 SENP3Q9H4L4 574 aaPredicted RBP15.77■□□□□ 0.12
VPS13D-210ENST00000489961 DIP2AQ14689 1571 aa15.77■□□□□ 0.11
VPS13D-210ENST00000489961 SETBP1Q9Y6X0 1596 aa15.77■□□□□ 0.11
VPS13D-210ENST00000489961 NEUROD1Q13562 356 aa15.76■□□□□ 0.11
VPS13D-210ENST00000489961 NRXN3Q9Y4C0 1643 aa15.76■□□□□ 0.11
VPS13D-210ENST00000489961 TBX22Q9Y458 520 aa15.75■□□□□ 0.11
VPS13D-210ENST00000489961 MYOM2P54296 1465 aa15.75■□□□□ 0.11
VPS13D-210ENST00000489961 ADAMTS13Q76LX8 1427 aa15.75■□□□□ 0.11
VPS13D-210ENST00000489961 DCAF11Q8TEB1 546 aa15.74■□□□□ 0.11
VPS13D-210ENST00000489961 STAC3Q96MF2 364 aa15.74■□□□□ 0.11
VPS13D-210ENST00000489961 ADGRF5Q8IZF2 1346 aa15.73■□□□□ 0.11
VPS13D-210ENST00000489961 ZNF335Q9H4Z2 1342 aaPredicted RBP15.73■□□□□ 0.11
VPS13D-210ENST00000489961 CLSPNQ9HAW4 1339 aa15.73■□□□□ 0.11
VPS13D-210ENST00000489961 CCER1Q8TC90 406 aaPredicted RBP15.73■□□□□ 0.11
VPS13D-210ENST00000489961 KDM2AQ9Y2K7 1162 aa15.72■□□□□ 0.11
VPS13D-210ENST00000489961 PIK3R4Q99570 1358 aa15.71■□□□□ 0.11
VPS13D-210ENST00000489961 ALKQ9UM73 1620 aa15.71■□□□□ 0.11
VPS13D-210ENST00000489961 NRXN1Q9ULB1 1477 aa15.71■□□□□ 0.1
VPS13D-210ENST00000489961 PIK3C2GO75747 1445 aa15.7■□□□□ 0.1
VPS13D-210ENST00000489961 CPS1P31327 1500 aa15.7■□□□□ 0.1
VPS13D-210ENST00000489961 LTBP4Q8N2S1 1624 aa15.7■□□□□ 0.1
VPS13D-210ENST00000489961 CHD2O14647 1828 aaKnown RBP15.7■□□□□ 0.1
VPS13D-210ENST00000489961 LAMC1P11047 1609 aa15.69■□□□□ 0.1
VPS13D-210ENST00000489961 SETD1AO15047 1707 aaKnown RBP15.69■□□□□ 0.1
VPS13D-210ENST00000489961 TONSLQ96HA7 1378 aa15.69■□□□□ 0.1
VPS13D-210ENST00000489961 STRCP1A6NGW2 1772 aa15.69■□□□□ 0.1
VPS13D-210ENST00000489961 NWD1Q149M9 1564 aa15.68■□□□□ 0.1
VPS13D-210ENST00000489961 KCNA6P17658 529 aa15.68■□□□□ 0.1
VPS13D-210ENST00000489961 L3MBTL2Q969R5 705 aa15.68■□□□□ 0.1
VPS13D-210ENST00000489961 METP08581 1390 aa15.66■□□□□ 0.1
VPS13D-210ENST00000489961 NKTRP30414 1462 aaKnown RBP15.65■□□□□ 0.1
VPS13D-210ENST00000489961 C14orf93Q9H972 538 aaKnown RBP15.65■□□□□ 0.1
VPS13D-210ENST00000489961 XRN1Q8IZH2 1706 aaKnown RBP15.63■□□□□ 0.09
VPS13D-210ENST00000489961 PTPRUQ92729 1446 aa15.63■□□□□ 0.09
VPS13D-210ENST00000489961 CFAP70Q5T0N1 1121 aa15.63■□□□□ 0.09
VPS13D-210ENST00000489961 CERKQ8TCT0 537 aa15.63■□□□□ 0.09
VPS13D-210ENST00000489961 AMOTL2Q9Y2J4 779 aa15.63■□□□□ 0.09
VPS13D-210ENST00000489961 KIAA1210Q9ULL0 1709 aa15.63■□□□□ 0.09
VPS13D-210ENST00000489961 PRAG1Q86YV5 1406 aa15.62■□□□□ 0.09
VPS13D-210ENST00000489961 LRRC7Q96NW7 1537 aa15.62■□□□□ 0.09
VPS13D-210ENST00000489961 IQSEC2Q5JU85 1478 aa15.61■□□□□ 0.09
VPS13D-210ENST00000489961 PROSER2Q86WR7 435 aaPredicted RBP15.61■□□□□ 0.09
VPS13D-210ENST00000489961 ASXL1Q8IXJ9 1541 aa15.61■□□□□ 0.09
VPS13D-210ENST00000489961 TIMELESSQ9UNS1 1208 aa15.6■□□□□ 0.09
VPS13D-210ENST00000489961 TMEM132EQ6IEE7 984 aa15.59■□□□□ 0.09
VPS13D-210ENST00000489961 KNDC1Q76NI1 1749 aa15.59■□□□□ 0.09
VPS13D-210ENST00000489961 LRPPRCP42704 1394 aaKnown RBP15.59■□□□□ 0.09
VPS13D-210ENST00000489961 XIRP1Q702N8 1843 aaKnown RBP15.58■□□□□ 0.08
VPS13D-210ENST00000489961 YTHDC2Q9H6S0 1430 aaKnown RBP15.58■□□□□ 0.08
VPS13D-210ENST00000489961 ADGRB1O14514 1584 aa15.58■□□□□ 0.08
VPS13D-210ENST00000489961 STK26Q9P289 416 aa15.57■□□□□ 0.08
VPS13D-210ENST00000489961 TMEM94Q12767 1356 aa15.57■□□□□ 0.08
VPS13D-210ENST00000489961 PTCH1Q13635 1447 aa15.57■□□□□ 0.08
VPS13D-210ENST00000489961 TRPM1Q7Z4N2 1603 aa15.57■□□□□ 0.08
VPS13D-210ENST00000489961 ABCC11Q96J66 1382 aa15.56■□□□□ 0.08
VPS13D-210ENST00000489961 TECPR2O15040 1411 aa15.56■□□□□ 0.08
VPS13D-210ENST00000489961 NCOA3Q9Y6Q9 1424 aa15.56■□□□□ 0.08
VPS13D-210ENST00000489961 C14orf37Q86TY3 774 aa15.54■□□□□ 0.08
VPS13D-210ENST00000489961 RBM33Q96EV2 1170 aaKnown RBP15.54■□□□□ 0.08
VPS13D-210ENST00000489961 MSH6P52701 1360 aa15.53■□□□□ 0.08
VPS13D-210ENST00000489961 ROBO2Q9HCK4 1378 aa15.53■□□□□ 0.08
VPS13D-210ENST00000489961 NBPF8Q3BBV2 869 aa15.53■□□□□ 0.08
VPS13D-210ENST00000489961 DLC1Q96QB1 1528 aa15.53■□□□□ 0.08
VPS13D-210ENST00000489961 NBPF1Q3BBV0 1214 aa15.52■□□□□ 0.08
VPS13D-210ENST00000489961 SIRT1Q96EB6 747 aa15.52■□□□□ 0.08
VPS13D-210ENST00000489961 FAM135BQ49AJ0 1406 aa15.51■□□□□ 0.07
VPS13D-210ENST00000489961 ROCK2O75116 1388 aaKnown RBP15.51■□□□□ 0.07
VPS13D-210ENST00000489961 TRAK1Q9UPV9 953 aa15.51■□□□□ 0.07
VPS13D-210ENST00000489961 RALGAPBQ86X10 1494 aa15.5■□□□□ 0.07
VPS13D-210ENST00000489961 NALCNQ8IZF0 1738 aa15.49■□□□□ 0.07
VPS13D-210ENST00000489961 ARHGEF28Q8N1W1 1705 aaKnown RBP15.49■□□□□ 0.07
VPS13D-210ENST00000489961 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.49■□□□□ 0.07
VPS13D-210ENST00000489961 TOM1O60784 492 aa15.49■□□□□ 0.07
VPS13D-210ENST00000489961 WAPLQ7Z5K2 1190 aa15.49■□□□□ 0.07
VPS13D-210ENST00000489961 C19orf44Q9H6X5 657 aa15.49■□□□□ 0.07
VPS13D-210ENST00000489961 POGKQ9P215 609 aa15.49■□□□□ 0.07
VPS13D-210ENST00000489961 ADGRL3Q9HAR2 1447 aa15.49■□□□□ 0.07
VPS13D-210ENST00000489961 UBAP1LF5GYI3 381 aa15.48■□□□□ 0.07
VPS13D-210ENST00000489961 PRAM1Q96QH2 718 aa15.48■□□□□ 0.07
VPS13D-210ENST00000489961 ATF3P18847 181 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms