RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TMEM131LA2VDJ0 1609 aa19.16■□□□□ 0.66
CPSF3-204ENST00000489403 NKTRP30414 1462 aaKnown RBP19.15■□□□□ 0.66
CPSF3-204ENST00000489403 E9PCH4 1651 aa19.14■□□□□ 0.66
CPSF3-204ENST00000489403 PHF23Q9BUL5 403 aaPredicted RBP19.14■□□□□ 0.65
CPSF3-204ENST00000489403 ROCK1Q13464 1354 aa19.14■□□□□ 0.65
CPSF3-204ENST00000489403 FAM135BQ49AJ0 1406 aa19.13■□□□□ 0.65
CPSF3-204ENST00000489403 IQGAP3Q86VI3 1631 aa19.13■□□□□ 0.65
CPSF3-204ENST00000489403 RIMS2Q9UQ26 1411 aa19.12■□□□□ 0.65
CPSF3-204ENST00000489403 PLEKHG1Q9ULL1 1385 aa19.12■□□□□ 0.65
CPSF3-204ENST00000489403 RBM33Q96EV2 1170 aaKnown RBP19.12■□□□□ 0.65
CPSF3-204ENST00000489403 PROSER2Q86WR7 435 aaPredicted RBP19.11■□□□□ 0.65
CPSF3-204ENST00000489403 ROBO1Q9Y6N7 1651 aa19.11■□□□□ 0.65
CPSF3-204ENST00000489403 CHD2O14647 1828 aaKnown RBP19.1■□□□□ 0.65
CPSF3-204ENST00000489403 BCANQ96GW7 911 aa19.1■□□□□ 0.65
CPSF3-204ENST00000489403 PPP1R15AO75807 674 aaPredicted RBP19.07■□□□□ 0.64
CPSF3-204ENST00000489403 CHGAP10645 457 aaKnown RBP19.05■□□□□ 0.64
CPSF3-204ENST00000489403 HDGFP51858 240 aaKnown RBP19.05■□□□□ 0.64
CPSF3-204ENST00000489403 MSH6P52701 1360 aa19.05■□□□□ 0.64
CPSF3-204ENST00000489403 NUP155O75694 1391 aa19.04■□□□□ 0.64
CPSF3-204ENST00000489403 DIP2AQ14689 1571 aa19.03■□□□□ 0.64
CPSF3-204ENST00000489403 ADAMTS13Q76LX8 1427 aa19.03■□□□□ 0.64
CPSF3-204ENST00000489403 ITGAEP38570 1179 aa19.03■□□□□ 0.64
CPSF3-204ENST00000489403 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.03■□□□□ 0.64
CPSF3-204ENST00000489403 RGS17Q9UGC6 210 aaPredicted RBP19.02■□□□□ 0.64
CPSF3-204ENST00000489403 TBX22Q9Y458 520 aa19.02■□□□□ 0.64
CPSF3-204ENST00000489403 NUTM2DQ5VT03 806 aaPredicted RBP19.01■□□□□ 0.63
CPSF3-204ENST00000489403 PPARGC1BQ86YN6 1023 aaKnown RBP19.01■□□□□ 0.63
CPSF3-204ENST00000489403 PHLPP1O60346 1717 aa19■□□□□ 0.63
CPSF3-204ENST00000489403 SPHKAPQ2M3C7 1700 aa18.99■□□□□ 0.63
CPSF3-204ENST00000489403 NCOA3Q9Y6Q9 1424 aa18.99■□□□□ 0.63
CPSF3-204ENST00000489403 SLAIN2Q9P270 581 aa18.98■□□□□ 0.63
CPSF3-204ENST00000489403 PIK3R4Q99570 1358 aa18.96■□□□□ 0.63
CPSF3-204ENST00000489403 TRPM2O94759 1503 aa18.96■□□□□ 0.63
CPSF3-204ENST00000489403 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.95■□□□□ 0.62
CPSF3-204ENST00000489403 NRXN3Q9Y4C0 1643 aa18.95■□□□□ 0.62
CPSF3-204ENST00000489403 PTPRUQ92729 1446 aa18.94■□□□□ 0.62
CPSF3-204ENST00000489403 COL16A1Q07092 1604 aaPredicted RBP18.94■□□□□ 0.62
CPSF3-204ENST00000489403 SETBP1Q9Y6X0 1596 aa18.92■□□□□ 0.62
CPSF3-204ENST00000489403 C14orf37Q86TY3 774 aa18.91■□□□□ 0.62
CPSF3-204ENST00000489403 JCADQ9P266 1359 aa18.91■□□□□ 0.62
CPSF3-204ENST00000489403 XRN1Q8IZH2 1706 aaKnown RBP18.91■□□□□ 0.62
CPSF3-204ENST00000489403 RRBP1Q9P2E9 1410 aaKnown RBP18.91■□□□□ 0.62
CPSF3-204ENST00000489403 CLTCL1P53675 1640 aa18.9■□□□□ 0.62
CPSF3-204ENST00000489403 POTEAQ6S8J7 498 aa18.9■□□□□ 0.62
CPSF3-204ENST00000489403 CADPS2Q86UW7 1296 aa18.89■□□□□ 0.61
CPSF3-204ENST00000489403 C19orf44Q9H6X5 657 aa18.89■□□□□ 0.61
CPSF3-204ENST00000489403 AMOTL2Q9Y2J4 779 aa18.89■□□□□ 0.61
CPSF3-204ENST00000489403 AHDC1Q5TGY3 1603 aaPredicted RBP18.89■□□□□ 0.61
CPSF3-204ENST00000489403 NAIPQ13075 1403 aa18.87■□□□□ 0.61
CPSF3-204ENST00000489403 NEXMIFQ5QGS0 1516 aa18.87■□□□□ 0.61
CPSF3-204ENST00000489403 ATF3P18847 181 aa18.86■□□□□ 0.61
CPSF3-204ENST00000489403 ZNF326Q5BKZ1 582 aaKnown RBP18.86■□□□□ 0.61
CPSF3-204ENST00000489403 DCCP43146 1447 aa18.84■□□□□ 0.61
CPSF3-204ENST00000489403 METP08581 1390 aa18.84■□□□□ 0.61
CPSF3-204ENST00000489403 KIF1BO60333 1816 aa18.84■□□□□ 0.61
CPSF3-204ENST00000489403 SHPRHQ149N8 1683 aa18.84■□□□□ 0.61
CPSF3-204ENST00000489403 LRP6O75581 1613 aa18.84■□□□□ 0.61
CPSF3-204ENST00000489403 BRINP3Q76B58 766 aa18.81■□□□□ 0.6
CPSF3-204ENST00000489403 ASXL1Q8IXJ9 1541 aa18.8■□□□□ 0.6
CPSF3-204ENST00000489403 SPATA31A6Q5VVP1 1343 aa18.8■□□□□ 0.6
CPSF3-204ENST00000489403 MST1RQ04912 1400 aa18.8■□□□□ 0.6
CPSF3-204ENST00000489403 SETD1AO15047 1707 aaKnown RBP18.8■□□□□ 0.6
CPSF3-204ENST00000489403 HFM1A2PYH4 1435 aa18.79■□□□□ 0.6
CPSF3-204ENST00000489403 NALCNQ8IZF0 1738 aa18.78■□□□□ 0.6
CPSF3-204ENST00000489403 NHSL1Q5SYE7 1610 aa18.78■□□□□ 0.6
CPSF3-204ENST00000489403 ADGRL3Q9HAR2 1447 aa18.76■□□□□ 0.59
CPSF3-204ENST00000489403 MEX3CQ5U5Q3 659 aaKnown RBP18.74■□□□□ 0.59
CPSF3-204ENST00000489403 TRIM52Q96A61 297 aa18.74■□□□□ 0.59
CPSF3-204ENST00000489403 SETD5Q9C0A6 1442 aa18.74■□□□□ 0.59
CPSF3-204ENST00000489403 PPLO60437 1756 aa18.72■□□□□ 0.59
CPSF3-204ENST00000489403 PTCH1Q13635 1447 aa18.72■□□□□ 0.59
CPSF3-204ENST00000489403 VGFO15240 615 aaPredicted RBP18.7■□□□□ 0.58
CPSF3-204ENST00000489403 ZNF772Q68DY9 489 aaPredicted RBP18.7■□□□□ 0.58
CPSF3-204ENST00000489403 SLC4A1APQ9BWU0 796 aaKnown RBP18.7■□□□□ 0.58
CPSF3-204ENST00000489403 PRAG1Q86YV5 1406 aa18.69■□□□□ 0.58
CPSF3-204ENST00000489403 ROBO2Q9HCK4 1378 aa18.68■□□□□ 0.58
CPSF3-204ENST00000489403 NUTM2BA6NNL0 878 aaPredicted RBP18.68■□□□□ 0.58
CPSF3-204ENST00000489403 NUTM2EB1AL46 878 aaPredicted RBP18.68■□□□□ 0.58
CPSF3-204ENST00000489403 NUTM2AQ8IVF1 878 aaPredicted RBP18.68■□□□□ 0.58
CPSF3-204ENST00000489403 DDX17Q92841 729 aaKnown RBP18.68■□□□□ 0.58
CPSF3-204ENST00000489403 C1orf167Q5SNV9 1468 aa18.68■□□□□ 0.58
CPSF3-204ENST00000489403 RPGRIP1LQ68CZ1 1315 aa18.67■□□□□ 0.58
CPSF3-204ENST00000489403 LRRC59Q96AG4 307 aaKnown RBP18.66■□□□□ 0.58
CPSF3-204ENST00000489403 LAMC1P11047 1609 aa18.66■□□□□ 0.58
CPSF3-204ENST00000489403 PNPLA6Q8IY17 1366 aa18.66■□□□□ 0.58
CPSF3-204ENST00000489403 FOXD1Q16676 465 aa18.64■□□□□ 0.57
CPSF3-204ENST00000489403 AFF2P51816 1311 aa18.62■□□□□ 0.57
CPSF3-204ENST00000489403 IFT172Q9UG01 1749 aa18.61■□□□□ 0.57
CPSF3-204ENST00000489403 RXRBP28702 533 aa18.61■□□□□ 0.57
CPSF3-204ENST00000489403 CCDC144AA2RUR9 1427 aa18.6■□□□□ 0.57
CPSF3-204ENST00000489403 ORAI2Q96SN7 254 aa18.6■□□□□ 0.57
CPSF3-204ENST00000489403 CDK12Q9NYV4 1490 aaPredicted RBP18.59■□□□□ 0.57
CPSF3-204ENST00000489403 ADGRF5Q8IZF2 1346 aa18.59■□□□□ 0.57
CPSF3-204ENST00000489403 CDC42BPGQ6DT37 1551 aa18.59■□□□□ 0.57
CPSF3-204ENST00000489403 SPATA31E1Q6ZUB1 1445 aa18.58■□□□□ 0.57
CPSF3-204ENST00000489403 C8orf37Q96NL8 207 aa18.58■□□□□ 0.56
CPSF3-204ENST00000489403 SOS2Q07890 1332 aaPredicted RBP18.57■□□□□ 0.56
CPSF3-204ENST00000489403 UPF1Q92900 1129 aaKnown RBP eCLIP18.57■□□□□ 0.56
CPSF3-204ENST00000489403 KNDC1Q76NI1 1749 aa18.55■□□□□ 0.56
CPSF3-204ENST00000489403 MPHOSPH9Q99550 1183 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 259.3 ms