RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 SLC4A1APQ9BWU0 796 aaKnown RBP31.73■■■□□ 2.67
LIME1-207ENST00000489212 SENP3Q9H4L4 574 aaPredicted RBP31.73■■■□□ 2.67
LIME1-207ENST00000489212 CLTCL1P53675 1640 aa31.73■■■□□ 2.67
LIME1-207ENST00000489212 LRRC7Q96NW7 1537 aa31.73■■■□□ 2.67
LIME1-207ENST00000489212 PLEKHG1Q9ULL1 1385 aa31.72■■■□□ 2.67
LIME1-207ENST00000489212 NUTM2DQ5VT03 806 aaPredicted RBP31.71■■■□□ 2.67
LIME1-207ENST00000489212 PPP1R15AO75807 674 aaPredicted RBP31.7■■■□□ 2.67
LIME1-207ENST00000489212 HDGFP51858 240 aaKnown RBP31.7■■■□□ 2.67
LIME1-207ENST00000489212 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.68■■■□□ 2.66
LIME1-207ENST00000489212 BCANQ96GW7 911 aa31.67■■■□□ 2.66
LIME1-207ENST00000489212 SETD5Q9C0A6 1442 aa31.66■■■□□ 2.66
LIME1-207ENST00000489212 KCNA6P17658 529 aa31.63■■■□□ 2.65
LIME1-207ENST00000489212 FOXD1Q16676 465 aa31.63■■■□□ 2.65
LIME1-207ENST00000489212 XIRP1Q702N8 1843 aaKnown RBP31.61■■■□□ 2.65
LIME1-207ENST00000489212 ALKQ9UM73 1620 aa31.6■■■□□ 2.65
LIME1-207ENST00000489212 ADAMTS13Q76LX8 1427 aa31.6■■■□□ 2.65
LIME1-207ENST00000489212 KIF1BO60333 1816 aa31.59■■■□□ 2.65
LIME1-207ENST00000489212 ZNF326Q5BKZ1 582 aaKnown RBP31.59■■■□□ 2.65
LIME1-207ENST00000489212 MPHOSPH9Q99550 1183 aa31.59■■■□□ 2.65
LIME1-207ENST00000489212 NWD1Q149M9 1564 aa31.59■■■□□ 2.65
LIME1-207ENST00000489212 TOM1O60784 492 aa31.57■■■□□ 2.64
LIME1-207ENST00000489212 TBX22Q9Y458 520 aa31.57■■■□□ 2.64
LIME1-207ENST00000489212 RAB3GAP2Q9H2M9 1393 aa31.56■■■□□ 2.64
LIME1-207ENST00000489212 CHD2O14647 1828 aaKnown RBP31.55■■■□□ 2.64
LIME1-207ENST00000489212 NEXMIFQ5QGS0 1516 aa31.54■■■□□ 2.64
LIME1-207ENST00000489212 PIP4K2BP78356 416 aa31.53■■■□□ 2.64
LIME1-207ENST00000489212 DIP2AQ14689 1571 aa31.52■■■□□ 2.64
LIME1-207ENST00000489212 TMEM94Q12767 1356 aa31.52■■■□□ 2.64
LIME1-207ENST00000489212 NRXN3Q9Y4C0 1643 aa31.52■■■□□ 2.64
LIME1-207ENST00000489212 NKTRP30414 1462 aaKnown RBP31.52■■■□□ 2.64
LIME1-207ENST00000489212 PROSER2Q86WR7 435 aaPredicted RBP31.5■■■□□ 2.63
LIME1-207ENST00000489212 RBM33Q96EV2 1170 aaKnown RBP31.5■■■□□ 2.63
LIME1-207ENST00000489212 SCAF1Q9H7N4 1312 aaKnown RBP31.49■■■□□ 2.63
LIME1-207ENST00000489212 ACIN1Q9UKV3 1341 aaKnown RBP31.49■■■□□ 2.63
LIME1-207ENST00000489212 SETBP1Q9Y6X0 1596 aa31.48■■■□□ 2.63
LIME1-207ENST00000489212 PIK3R4Q99570 1358 aa31.44■■■□□ 2.62
LIME1-207ENST00000489212 CCDC144AA2RUR9 1427 aa31.43■■■□□ 2.62
LIME1-207ENST00000489212 PTPRUQ92729 1446 aa31.42■■■□□ 2.62
LIME1-207ENST00000489212 HSPA1LP34931 641 aa31.39■■■□□ 2.62
LIME1-207ENST00000489212 RPGRIP1LQ68CZ1 1315 aa31.39■■■□□ 2.62
LIME1-207ENST00000489212 PPLO60437 1756 aa31.38■■■□□ 2.61
LIME1-207ENST00000489212 METP08581 1390 aa31.37■■■□□ 2.61
LIME1-207ENST00000489212 SPATA31E1Q6ZUB1 1445 aa31.37■■■□□ 2.61
LIME1-207ENST00000489212 AMOTL2Q9Y2J4 779 aa31.36■■■□□ 2.61
LIME1-207ENST00000489212 VGFO15240 615 aaPredicted RBP31.35■■■□□ 2.61
LIME1-207ENST00000489212 XRN1Q8IZH2 1706 aaKnown RBP31.33■■■□□ 2.61
LIME1-207ENST00000489212 HRCP23327 699 aa31.33■■■□□ 2.61
LIME1-207ENST00000489212 RGL3Q3MIN7 710 aa31.32■■■□□ 2.6
LIME1-207ENST00000489212 MSH6P52701 1360 aa31.3■■■□□ 2.6
LIME1-207ENST00000489212 SETD1AO15047 1707 aaKnown RBP31.29■■■□□ 2.6
LIME1-207ENST00000489212 NCOA3Q9Y6Q9 1424 aa31.29■■■□□ 2.6
LIME1-207ENST00000489212 IFT172Q9UG01 1749 aa31.27■■■□□ 2.6
LIME1-207ENST00000489212 ADGRF5Q8IZF2 1346 aa31.25■■■□□ 2.59
LIME1-207ENST00000489212 FAM135BQ49AJ0 1406 aa31.24■■■□□ 2.59
LIME1-207ENST00000489212 ANKRD30BQ9BXX2 1392 aa31.24■■■□□ 2.59
LIME1-207ENST00000489212 C14orf37Q86TY3 774 aa31.22■■■□□ 2.59
LIME1-207ENST00000489212 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.21■■■□□ 2.59
LIME1-207ENST00000489212 ROBO1Q9Y6N7 1651 aa31.2■■■□□ 2.59
LIME1-207ENST00000489212 C19orf44Q9H6X5 657 aa31.19■■■□□ 2.58
LIME1-207ENST00000489212 SLAIN2Q9P270 581 aa31.19■■■□□ 2.58
LIME1-207ENST00000489212 DISP3Q9P2K9 1392 aa31.15■■■□□ 2.58
LIME1-207ENST00000489212 PIK3C2GO75747 1445 aa31.13■■■□□ 2.57
LIME1-207ENST00000489212 CADPS2Q86UW7 1296 aa31.12■■■□□ 2.57
LIME1-207ENST00000489212 ROBO2Q9HCK4 1378 aa31.12■■■□□ 2.57
LIME1-207ENST00000489212 PTCH1Q13635 1447 aa31.12■■■□□ 2.57
LIME1-207ENST00000489212 ATF3P18847 181 aa31.11■■■□□ 2.57
LIME1-207ENST00000489212 PRAG1Q86YV5 1406 aa31.11■■■□□ 2.57
LIME1-207ENST00000489212 DCCP43146 1447 aa31.08■■■□□ 2.57
LIME1-207ENST00000489212 ADGRL3Q9HAR2 1447 aa31.08■■■□□ 2.57
LIME1-207ENST00000489212 NALCNQ8IZF0 1738 aa31.08■■■□□ 2.57
LIME1-207ENST00000489212 ASXL1Q8IXJ9 1541 aa31.08■■■□□ 2.57
LIME1-207ENST00000489212 NRXN1Q9ULB1 1477 aa31.08■■■□□ 2.57
LIME1-207ENST00000489212 MYOM2P54296 1465 aa31.07■■■□□ 2.56
LIME1-207ENST00000489212 MED1Q15648 1581 aaPredicted RBP31.05■■■□□ 2.56
LIME1-207ENST00000489212 TMEM132EQ6IEE7 984 aa31.03■■■□□ 2.56
LIME1-207ENST00000489212 MST1RQ04912 1400 aa31.01■■■□□ 2.55
LIME1-207ENST00000489212 C14orf93Q9H972 538 aaKnown RBP31■■■□□ 2.55
LIME1-207ENST00000489212 LRPPRCP42704 1394 aaKnown RBP31■■■□□ 2.55
LIME1-207ENST00000489212 PHLPP1O60346 1717 aa30.99■■■□□ 2.55
LIME1-207ENST00000489212 STK26Q9P289 416 aa30.99■■■□□ 2.55
LIME1-207ENST00000489212 TECPR2O15040 1411 aa30.98■■■□□ 2.55
LIME1-207ENST00000489212 CFAP70Q5T0N1 1121 aa30.98■■■□□ 2.55
LIME1-207ENST00000489212 BRINP3Q76B58 766 aa30.97■■■□□ 2.55
LIME1-207ENST00000489212 ABCC11Q96J66 1382 aa30.96■■■□□ 2.55
LIME1-207ENST00000489212 DHX57Q6P158 1386 aaKnown RBP30.95■■■□□ 2.55
LIME1-207ENST00000489212 YTHDC2Q9H6S0 1430 aaKnown RBP30.95■■■□□ 2.54
LIME1-207ENST00000489212 KNDC1Q76NI1 1749 aa30.95■■■□□ 2.54
LIME1-207ENST00000489212 DCAF11Q8TEB1 546 aa30.94■■■□□ 2.54
LIME1-207ENST00000489212 KDM2AQ9Y2K7 1162 aa30.94■■■□□ 2.54
LIME1-207ENST00000489212 LAMC1P11047 1609 aa30.94■■■□□ 2.54
LIME1-207ENST00000489212 COL16A1Q07092 1604 aaPredicted RBP30.94■■■□□ 2.54
LIME1-207ENST00000489212 ILDR2Q71H61 639 aa30.93■■■□□ 2.54
LIME1-207ENST00000489212 AHDC1Q5TGY3 1603 aaPredicted RBP30.93■■■□□ 2.54
LIME1-207ENST00000489212 WAPLQ7Z5K2 1190 aa30.92■■■□□ 2.54
LIME1-207ENST00000489212 PLEKHH1Q9ULM0 1364 aa30.91■■■□□ 2.54
LIME1-207ENST00000489212 C1orf167Q5SNV9 1468 aa30.89■■■□□ 2.53
LIME1-207ENST00000489212 ADGRB1O14514 1584 aa30.85■■■□□ 2.53
LIME1-207ENST00000489212 CDC42BPGQ6DT37 1551 aa30.84■■■□□ 2.53
LIME1-207ENST00000489212 JCADQ9P266 1359 aa30.84■■■□□ 2.53
LIME1-207ENST00000489212 STAC3Q96MF2 364 aa30.84■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms