RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 DCAF11Q8TEB1 546 aa22.63■■□□□ 1.21
SYNE1-227ENST00000489156 TMEM2Q9UHN6 1383 aa22.63■■□□□ 1.21
SYNE1-227ENST00000489156 PPLO60437 1756 aa22.63■■□□□ 1.21
SYNE1-227ENST00000489156 HSPA2P54652 639 aa22.62■■□□□ 1.21
SYNE1-227ENST00000489156 IFT172Q9UG01 1749 aa22.62■■□□□ 1.21
SYNE1-227ENST00000489156 KDM2AQ9Y2K7 1162 aa22.62■■□□□ 1.21
SYNE1-227ENST00000489156 NEXMIFQ5QGS0 1516 aa22.62■■□□□ 1.21
SYNE1-227ENST00000489156 RIMS2Q9UQ26 1411 aa22.61■■□□□ 1.21
SYNE1-227ENST00000489156 RPGRIP1LQ68CZ1 1315 aa22.61■■□□□ 1.21
SYNE1-227ENST00000489156 SLIT1O75093 1534 aa22.59■■□□□ 1.21
SYNE1-227ENST00000489156 ZFYVE9O95405 1425 aa22.59■■□□□ 1.21
SYNE1-227ENST00000489156 ARHGAP23Q9P227 1491 aa22.59■■□□□ 1.21
SYNE1-227ENST00000489156 LTKP29376 864 aa22.58■■□□□ 1.2
SYNE1-227ENST00000489156 TXNDC2Q86VQ3 553 aa22.58■■□□□ 1.2
SYNE1-227ENST00000489156 SENP3Q9H4L4 574 aaPredicted RBP22.56■■□□□ 1.2
SYNE1-227ENST00000489156 EID1Q9Y6B2 187 aa22.56■■□□□ 1.2
SYNE1-227ENST00000489156 HDGFP51858 240 aaKnown RBP22.56■■□□□ 1.2
SYNE1-227ENST00000489156 DIEXFQ68CQ4 756 aaKnown RBP22.56■■□□□ 1.2
SYNE1-227ENST00000489156 VGFO15240 615 aaPredicted RBP22.55■■□□□ 1.2
SYNE1-227ENST00000489156 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.55■■□□□ 1.2
SYNE1-227ENST00000489156 ANKLE2Q86XL3 938 aa22.54■■□□□ 1.2
SYNE1-227ENST00000489156 ADGRF5Q8IZF2 1346 aa22.54■■□□□ 1.2
SYNE1-227ENST00000489156 SCAF11Q99590 1463 aaKnown RBP22.52■■□□□ 1.2
SYNE1-227ENST00000489156 POLR1AO95602 1720 aaPredicted RBP22.52■■□□□ 1.2
SYNE1-227ENST00000489156 NCKAP5LQ9HCH0 1330 aa22.52■■□□□ 1.19
SYNE1-227ENST00000489156 MYOM2P54296 1465 aa22.51■■□□□ 1.19
SYNE1-227ENST00000489156 STAC3Q96MF2 364 aa22.51■■□□□ 1.19
SYNE1-227ENST00000489156 NBPF8Q3BBV2 869 aa22.49■■□□□ 1.19
SYNE1-227ENST00000489156 STRCQ7RTU9 1775 aa22.48■■□□□ 1.19
SYNE1-227ENST00000489156 BCANQ96GW7 911 aa22.48■■□□□ 1.19
SYNE1-227ENST00000489156 NRXN1Q9ULB1 1477 aa22.47■■□□□ 1.19
SYNE1-227ENST00000489156 PLEKHG1Q9ULL1 1385 aa22.46■■□□□ 1.19
SYNE1-227ENST00000489156 PRAG1Q86YV5 1406 aa22.46■■□□□ 1.19
SYNE1-227ENST00000489156 PIK3C2GO75747 1445 aa22.45■■□□□ 1.18
SYNE1-227ENST00000489156 IQGAP1P46940 1657 aa22.44■■□□□ 1.18
SYNE1-227ENST00000489156 NRXN3Q9Y4C0 1643 aa22.43■■□□□ 1.18
SYNE1-227ENST00000489156 MED14O60244 1454 aa22.42■■□□□ 1.18
SYNE1-227ENST00000489156 NPHP4O75161 1426 aaPredicted RBP22.42■■□□□ 1.18
SYNE1-227ENST00000489156 EIF4G2P78344 907 aaKnown RBP eCLIP22.42■■□□□ 1.18
SYNE1-227ENST00000489156 CFAP70Q5T0N1 1121 aa22.42■■□□□ 1.18
SYNE1-227ENST00000489156 SLC26A8Q96RN1 970 aa22.41■■□□□ 1.18
SYNE1-227ENST00000489156 SETBP1Q9Y6X0 1596 aa22.41■■□□□ 1.18
SYNE1-227ENST00000489156 ALKQ9UM73 1620 aa22.39■■□□□ 1.18
SYNE1-227ENST00000489156 C14orf93Q9H972 538 aaKnown RBP22.39■■□□□ 1.18
SYNE1-227ENST00000489156 ADAMTS13Q76LX8 1427 aa22.39■■□□□ 1.17
SYNE1-227ENST00000489156 TRPM1Q7Z4N2 1603 aa22.38■■□□□ 1.17
SYNE1-227ENST00000489156 RALGAPBQ86X10 1494 aa22.38■■□□□ 1.17
SYNE1-227ENST00000489156 SETD1AO15047 1707 aaKnown RBP22.37■■□□□ 1.17
SYNE1-227ENST00000489156 NBPF1Q3BBV0 1214 aa22.37■■□□□ 1.17
SYNE1-227ENST00000489156 KIAA1210Q9ULL0 1709 aa22.36■■□□□ 1.17
SYNE1-227ENST00000489156 LAMC1P11047 1609 aa22.36■■□□□ 1.17
SYNE1-227ENST00000489156 HSPA5P11021 654 aaKnown RBP22.34■■□□□ 1.17
SYNE1-227ENST00000489156 TMEM132EQ6IEE7 984 aa22.34■■□□□ 1.17
SYNE1-227ENST00000489156 TBX22Q9Y458 520 aa22.34■■□□□ 1.17
SYNE1-227ENST00000489156 METP08581 1390 aa22.33■■□□□ 1.16
SYNE1-227ENST00000489156 DIP2AQ14689 1571 aa22.32■■□□□ 1.16
SYNE1-227ENST00000489156 ROCK2O75116 1388 aaKnown RBP22.32■■□□□ 1.16
SYNE1-227ENST00000489156 HIRIP3Q9BW71 556 aaPredicted RBP22.31■■□□□ 1.16
SYNE1-227ENST00000489156 DMRT2Q9Y5R5 561 aa22.3■■□□□ 1.16
SYNE1-227ENST00000489156 ASXL1Q8IXJ9 1541 aa22.3■■□□□ 1.16
SYNE1-227ENST00000489156 ADGRB1O14514 1584 aa22.29■■□□□ 1.16
SYNE1-227ENST00000489156 CARD11Q9BXL7 1154 aa22.27■■□□□ 1.16
SYNE1-227ENST00000489156 CHD2O14647 1828 aaKnown RBP22.27■■□□□ 1.16
SYNE1-227ENST00000489156 STK26Q9P289 416 aa22.26■■□□□ 1.15
SYNE1-227ENST00000489156 GPRASP1Q5JY77 1395 aa22.25■■□□□ 1.15
SYNE1-227ENST00000489156 USP47Q96K76 1375 aa22.25■■□□□ 1.15
SYNE1-227ENST00000489156 PTPRUQ92729 1446 aa22.25■■□□□ 1.15
SYNE1-227ENST00000489156 YTHDC2Q9H6S0 1430 aaKnown RBP22.24■■□□□ 1.15
SYNE1-227ENST00000489156 PIK3R4Q99570 1358 aa22.23■■□□□ 1.15
SYNE1-227ENST00000489156 TRAK1Q9UPV9 953 aa22.23■■□□□ 1.15
SYNE1-227ENST00000489156 AMOTL2Q9Y2J4 779 aa22.23■■□□□ 1.15
SYNE1-227ENST00000489156 LRPPRCP42704 1394 aaKnown RBP22.21■■□□□ 1.15
SYNE1-227ENST00000489156 STRCP1A6NGW2 1772 aa22.2■■□□□ 1.14
SYNE1-227ENST00000489156 KCNA6P17658 529 aa22.2■■□□□ 1.14
SYNE1-227ENST00000489156 DDX10Q13206 875 aaKnown RBP22.2■■□□□ 1.14
SYNE1-227ENST00000489156 XRN1Q8IZH2 1706 aaKnown RBP22.19■■□□□ 1.14
SYNE1-227ENST00000489156 ABCC11Q96J66 1382 aa22.18■■□□□ 1.14
SYNE1-227ENST00000489156 ZNF335Q9H4Z2 1342 aaPredicted RBP22.18■■□□□ 1.14
SYNE1-227ENST00000489156 KNDC1Q76NI1 1749 aa22.17■■□□□ 1.14
SYNE1-227ENST00000489156 WASHC2AQ641Q2 1341 aa22.17■■□□□ 1.14
SYNE1-227ENST00000489156 ARHGEF28Q8N1W1 1705 aaKnown RBP22.17■■□□□ 1.14
SYNE1-227ENST00000489156 MIER1Q8N108 512 aa22.16■■□□□ 1.14
SYNE1-227ENST00000489156 NWD1Q149M9 1564 aa22.16■■□□□ 1.14
SYNE1-227ENST00000489156 ROBO2Q9HCK4 1378 aa22.14■■□□□ 1.14
SYNE1-227ENST00000489156 TECPR2O15040 1411 aa22.14■■□□□ 1.13
SYNE1-227ENST00000489156 WAPLQ7Z5K2 1190 aa22.13■■□□□ 1.13
SYNE1-227ENST00000489156 CCDC7Q96M83 1385 aa22.13■■□□□ 1.13
SYNE1-227ENST00000489156 PRAM1Q96QH2 718 aa22.13■■□□□ 1.13
SYNE1-227ENST00000489156 CPS1P31327 1500 aa22.13■■□□□ 1.13
SYNE1-227ENST00000489156 DLC1Q96QB1 1528 aa22.12■■□□□ 1.13
SYNE1-227ENST00000489156 SAFB2Q14151 953 aaKnown RBP eCLIP22.12■■□□□ 1.13
SYNE1-227ENST00000489156 RBM33Q96EV2 1170 aaKnown RBP22.11■■□□□ 1.13
SYNE1-227ENST00000489156 PLEKHH1Q9ULM0 1364 aa22.11■■□□□ 1.13
SYNE1-227ENST00000489156 POGKQ9P215 609 aa22.11■■□□□ 1.13
SYNE1-227ENST00000489156 PTCH1Q13635 1447 aa22.1■■□□□ 1.13
SYNE1-227ENST00000489156 ST20-MTHFSA0A0A6YYL1 179 aa22.1■■□□□ 1.13
SYNE1-227ENST00000489156 C11orf95C9JLR9 678 aaPredicted RBP22.1■■□□□ 1.13
SYNE1-227ENST00000489156 EIF3AQ14152 1382 aaKnown RBP22.09■■□□□ 1.13
SYNE1-227ENST00000489156 PROSER2Q86WR7 435 aaPredicted RBP22.09■■□□□ 1.13
SYNE1-227ENST00000489156 SIRT1Q96EB6 747 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms