RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 CPS1P31327 1500 aa21.24■□□□□ 0.99
BRCA1-218ENST00000489037 RIMS2Q9UQ26 1411 aa21.24■□□□□ 0.99
BRCA1-218ENST00000489037 KIF1BO60333 1816 aa21.22■□□□□ 0.99
BRCA1-218ENST00000489037 ZNF326Q5BKZ1 582 aaKnown RBP21.21■□□□□ 0.99
BRCA1-218ENST00000489037 TRPM2O94759 1503 aa21.2■□□□□ 0.98
BRCA1-218ENST00000489037 MPHOSPH9Q99550 1183 aa21.2■□□□□ 0.98
BRCA1-218ENST00000489037 ZFYVE9O95405 1425 aa21.2■□□□□ 0.98
BRCA1-218ENST00000489037 SLC26A8Q96RN1 970 aa21.17■□□□□ 0.98
BRCA1-218ENST00000489037 PLEKHG1Q9ULL1 1385 aa21.17■□□□□ 0.98
BRCA1-218ENST00000489037 CLTCL1P53675 1640 aa21.17■□□□□ 0.98
BRCA1-218ENST00000489037 RAB3GAP2Q9H2M9 1393 aa21.16■□□□□ 0.98
BRCA1-218ENST00000489037 NUTM2DQ5VT03 806 aaPredicted RBP21.15■□□□□ 0.98
BRCA1-218ENST00000489037 SENP3Q9H4L4 574 aaPredicted RBP21.15■□□□□ 0.98
BRCA1-218ENST00000489037 UBAP1LF5GYI3 381 aa21.14■□□□□ 0.97
BRCA1-218ENST00000489037 STRCP1A6NGW2 1772 aa21.14■□□□□ 0.97
BRCA1-218ENST00000489037 FOXD1Q16676 465 aa21.13■□□□□ 0.97
BRCA1-218ENST00000489037 KCNA6P17658 529 aa21.11■□□□□ 0.97
BRCA1-218ENST00000489037 TOM1O60784 492 aa21.1■□□□□ 0.97
BRCA1-218ENST00000489037 TBX22Q9Y458 520 aa21.1■□□□□ 0.97
BRCA1-218ENST00000489037 HRCP23327 699 aa21.09■□□□□ 0.97
BRCA1-218ENST00000489037 CCDC144AA2RUR9 1427 aa21.09■□□□□ 0.97
BRCA1-218ENST00000489037 LRRC7Q96NW7 1537 aa21.09■□□□□ 0.97
BRCA1-218ENST00000489037 RPGRIP1LQ68CZ1 1315 aa21.06■□□□□ 0.96
BRCA1-218ENST00000489037 DIP2AQ14689 1571 aa21.06■□□□□ 0.96
BRCA1-218ENST00000489037 PROSER2Q86WR7 435 aaPredicted RBP21.06■□□□□ 0.96
BRCA1-218ENST00000489037 CHD2O14647 1828 aaKnown RBP21.06■□□□□ 0.96
BRCA1-218ENST00000489037 VGFO15240 615 aaPredicted RBP21.05■□□□□ 0.96
BRCA1-218ENST00000489037 SCAF1Q9H7N4 1312 aaKnown RBP21.04■□□□□ 0.96
BRCA1-218ENST00000489037 NEXMIFQ5QGS0 1516 aa21.04■□□□□ 0.96
BRCA1-218ENST00000489037 ADAMTS13Q76LX8 1427 aa21.03■□□□□ 0.96
BRCA1-218ENST00000489037 PIK3R4Q99570 1358 aa21.02■□□□□ 0.96
BRCA1-218ENST00000489037 NWD1Q149M9 1564 aa21.02■□□□□ 0.95
BRCA1-218ENST00000489037 NKTRP30414 1462 aaKnown RBP21.01■□□□□ 0.95
BRCA1-218ENST00000489037 PIP4K2BP78356 416 aa21■□□□□ 0.95
BRCA1-218ENST00000489037 SETBP1Q9Y6X0 1596 aa21■□□□□ 0.95
BRCA1-218ENST00000489037 XIRP1Q702N8 1843 aaKnown RBP20.99■□□□□ 0.95
BRCA1-218ENST00000489037 TMEM94Q12767 1356 aa20.99■□□□□ 0.95
BRCA1-218ENST00000489037 RGL3Q3MIN7 710 aa20.99■□□□□ 0.95
BRCA1-218ENST00000489037 PPLO60437 1756 aa20.99■□□□□ 0.95
BRCA1-218ENST00000489037 AMOTL2Q9Y2J4 779 aa20.96■□□□□ 0.95
BRCA1-218ENST00000489037 NRXN3Q9Y4C0 1643 aa20.96■□□□□ 0.95
BRCA1-218ENST00000489037 C14orf37Q86TY3 774 aa20.94■□□□□ 0.94
BRCA1-218ENST00000489037 RBM33Q96EV2 1170 aaKnown RBP20.94■□□□□ 0.94
BRCA1-218ENST00000489037 MSH6P52701 1360 aa20.93■□□□□ 0.94
BRCA1-218ENST00000489037 ANKRD30BQ9BXX2 1392 aa20.93■□□□□ 0.94
BRCA1-218ENST00000489037 SPATA31E1Q6ZUB1 1445 aa20.93■□□□□ 0.94
BRCA1-218ENST00000489037 NCOA3Q9Y6Q9 1424 aa20.91■□□□□ 0.94
BRCA1-218ENST00000489037 IFT172Q9UG01 1749 aa20.9■□□□□ 0.94
BRCA1-218ENST00000489037 METP08581 1390 aa20.89■□□□□ 0.93
BRCA1-218ENST00000489037 PTPRUQ92729 1446 aa20.88■□□□□ 0.93
BRCA1-218ENST00000489037 ALKQ9UM73 1620 aa20.88■□□□□ 0.93
BRCA1-218ENST00000489037 ADGRF5Q8IZF2 1346 aa20.86■□□□□ 0.93
BRCA1-218ENST00000489037 XRN1Q8IZH2 1706 aaKnown RBP20.86■□□□□ 0.93
BRCA1-218ENST00000489037 C19orf44Q9H6X5 657 aa20.85■□□□□ 0.93
BRCA1-218ENST00000489037 ATF3P18847 181 aa20.84■□□□□ 0.93
BRCA1-218ENST00000489037 HSPA1LP34931 641 aa20.84■□□□□ 0.93
BRCA1-218ENST00000489037 TRIM26Q12899 539 aaPredicted RBP20.84■□□□□ 0.93
BRCA1-218ENST00000489037 SETD1AO15047 1707 aaKnown RBP20.84■□□□□ 0.93
BRCA1-218ENST00000489037 CADPS2Q86UW7 1296 aa20.82■□□□□ 0.92
BRCA1-218ENST00000489037 SLAIN2Q9P270 581 aa20.81■□□□□ 0.92
BRCA1-218ENST00000489037 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.81■□□□□ 0.92
BRCA1-218ENST00000489037 FAM135BQ49AJ0 1406 aa20.79■□□□□ 0.92
BRCA1-218ENST00000489037 STAC3Q96MF2 364 aa20.79■□□□□ 0.92
BRCA1-218ENST00000489037 MYOM2P54296 1465 aa20.79■□□□□ 0.92
BRCA1-218ENST00000489037 PIK3C2GO75747 1445 aa20.78■□□□□ 0.92
BRCA1-218ENST00000489037 DCAF11Q8TEB1 546 aa20.77■□□□□ 0.92
BRCA1-218ENST00000489037 KDM2AQ9Y2K7 1162 aa20.77■□□□□ 0.92
BRCA1-218ENST00000489037 PTCH1Q13635 1447 aa20.77■□□□□ 0.91
BRCA1-218ENST00000489037 ROBO1Q9Y6N7 1651 aa20.76■□□□□ 0.91
BRCA1-218ENST00000489037 C14orf93Q9H972 538 aaKnown RBP20.75■□□□□ 0.91
BRCA1-218ENST00000489037 STK26Q9P289 416 aa20.75■□□□□ 0.91
BRCA1-218ENST00000489037 DCCP43146 1447 aa20.75■□□□□ 0.91
BRCA1-218ENST00000489037 LAMC1P11047 1609 aa20.75■□□□□ 0.91
BRCA1-218ENST00000489037 ADGRL3Q9HAR2 1447 aa20.73■□□□□ 0.91
BRCA1-218ENST00000489037 TMEM132EQ6IEE7 984 aa20.73■□□□□ 0.91
BRCA1-218ENST00000489037 NRXN1Q9ULB1 1477 aa20.73■□□□□ 0.91
BRCA1-218ENST00000489037 ROBO2Q9HCK4 1378 aa20.72■□□□□ 0.91
BRCA1-218ENST00000489037 PRAG1Q86YV5 1406 aa20.72■□□□□ 0.91
BRCA1-218ENST00000489037 CFAP70Q5T0N1 1121 aa20.72■□□□□ 0.91
BRCA1-218ENST00000489037 LRPPRCP42704 1394 aaKnown RBP20.72■□□□□ 0.91
BRCA1-218ENST00000489037 DHX57Q6P158 1386 aaKnown RBP20.72■□□□□ 0.91
BRCA1-218ENST00000489037 ABCC11Q96J66 1382 aa20.7■□□□□ 0.9
BRCA1-218ENST00000489037 NALCNQ8IZF0 1738 aa20.7■□□□□ 0.9
BRCA1-218ENST00000489037 KNDC1Q76NI1 1749 aa20.69■□□□□ 0.9
BRCA1-218ENST00000489037 YTHDC2Q9H6S0 1430 aaKnown RBP20.69■□□□□ 0.9
BRCA1-218ENST00000489037 DISP3Q9P2K9 1392 aa20.68■□□□□ 0.9
BRCA1-218ENST00000489037 TECPR2O15040 1411 aa20.67■□□□□ 0.9
BRCA1-218ENST00000489037 PHLPP1O60346 1717 aa20.67■□□□□ 0.9
BRCA1-218ENST00000489037 ASXL1Q8IXJ9 1541 aa20.66■□□□□ 0.9
BRCA1-218ENST00000489037 SIRT1Q96EB6 747 aa20.65■□□□□ 0.9
BRCA1-218ENST00000489037 MST1RQ04912 1400 aa20.64■□□□□ 0.89
BRCA1-218ENST00000489037 WAPLQ7Z5K2 1190 aa20.64■□□□□ 0.89
BRCA1-218ENST00000489037 NEUROD1Q13562 356 aa20.62■□□□□ 0.89
BRCA1-218ENST00000489037 BRINP3Q76B58 766 aa20.62■□□□□ 0.89
BRCA1-218ENST00000489037 POGKQ9P215 609 aa20.61■□□□□ 0.89
BRCA1-218ENST00000489037 SIN3AQ96ST3 1273 aa20.6■□□□□ 0.89
BRCA1-218ENST00000489037 C1orf167Q5SNV9 1468 aa20.58■□□□□ 0.89
BRCA1-218ENST00000489037 AHDC1Q5TGY3 1603 aaPredicted RBP20.58■□□□□ 0.89
BRCA1-218ENST00000489037 TRAK1Q9UPV9 953 aa20.58■□□□□ 0.89
BRCA1-218ENST00000489037 CDC42BPGQ6DT37 1551 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms