RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 PHLPP1O60346 1717 aa24.24■■□□□ 1.47
MCF2L-228ENST00000487354 ANKRD30AQ9BXX3 1397 aa24.24■■□□□ 1.47
MCF2L-228ENST00000487354 STAG3Q9UJ98 1225 aa24.22■■□□□ 1.47
MCF2L-228ENST00000487354 TMEM131LA2VDJ0 1609 aa24.21■■□□□ 1.47
MCF2L-228ENST00000487354 COL16A1Q07092 1604 aaPredicted RBP24.21■■□□□ 1.47
MCF2L-228ENST00000487354 CHIC2Q9UKJ5 165 aa24.2■■□□□ 1.46
MCF2L-228ENST00000487354 RPRD2Q5VT52 1461 aaKnown RBP24.19■■□□□ 1.46
MCF2L-228ENST00000487354 PROSER2Q86WR7 435 aaPredicted RBP24.19■■□□□ 1.46
MCF2L-228ENST00000487354 PLEKHG1Q9ULL1 1385 aa24.16■■□□□ 1.46
MCF2L-228ENST00000487354 UNC13BO14795 1591 aa24.15■■□□□ 1.46
MCF2L-228ENST00000487354 SLC52A1Q9NWF4 448 aa24.14■■□□□ 1.45
MCF2L-228ENST00000487354 MSH6P52701 1360 aa24.14■■□□□ 1.45
MCF2L-228ENST00000487354 E9PCH4 1651 aa24.12■■□□□ 1.45
MCF2L-228ENST00000487354 RIMS2Q9UQ26 1411 aa24.12■■□□□ 1.45
MCF2L-228ENST00000487354 LRP6O75581 1613 aa24.11■■□□□ 1.45
MCF2L-228ENST00000487354 ANKRD50Q9ULJ7 1429 aa24.1■■□□□ 1.45
MCF2L-228ENST00000487354 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.1■■□□□ 1.45
MCF2L-228ENST00000487354 JCADQ9P266 1359 aa24.09■■□□□ 1.45
MCF2L-228ENST00000487354 SLAIN2Q9P270 581 aa24.09■■□□□ 1.45
MCF2L-228ENST00000487354 ADAMTS13Q76LX8 1427 aa24.09■■□□□ 1.45
MCF2L-228ENST00000487354 AHDC1Q5TGY3 1603 aaPredicted RBP24.07■■□□□ 1.44
MCF2L-228ENST00000487354 SHPRHQ149N8 1683 aa24.07■■□□□ 1.44
MCF2L-228ENST00000487354 DIP2AQ14689 1571 aa24.07■■□□□ 1.44
MCF2L-228ENST00000487354 NCOA3Q9Y6Q9 1424 aa24.04■■□□□ 1.44
MCF2L-228ENST00000487354 IQGAP3Q86VI3 1631 aa24.04■■□□□ 1.44
MCF2L-228ENST00000487354 APLP2Q06481 763 aa24.03■■□□□ 1.44
MCF2L-228ENST00000487354 BCANQ96GW7 911 aa24.01■■□□□ 1.43
MCF2L-228ENST00000487354 TBX22Q9Y458 520 aa24.01■■□□□ 1.43
MCF2L-228ENST00000487354 NRXN3Q9Y4C0 1643 aa24.01■■□□□ 1.43
MCF2L-228ENST00000487354 XRN1Q8IZH2 1706 aaKnown RBP23.98■■□□□ 1.43
MCF2L-228ENST00000487354 PTPRUQ92729 1446 aa23.98■■□□□ 1.43
MCF2L-228ENST00000487354 PPP1R15AO75807 674 aaPredicted RBP23.97■■□□□ 1.43
MCF2L-228ENST00000487354 TRPM2O94759 1503 aa23.96■■□□□ 1.43
MCF2L-228ENST00000487354 PIK3R4Q99570 1358 aa23.96■■□□□ 1.43
MCF2L-228ENST00000487354 FAM50AQ14320 339 aaKnown RBP23.95■■□□□ 1.42
MCF2L-228ENST00000487354 SPATA31A6Q5VVP1 1343 aa23.94■■□□□ 1.42
MCF2L-228ENST00000487354 NHSL1Q5SYE7 1610 aa23.93■■□□□ 1.42
MCF2L-228ENST00000487354 NUTM2DQ5VT03 806 aaPredicted RBP23.93■■□□□ 1.42
MCF2L-228ENST00000487354 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.91■■□□□ 1.42
MCF2L-228ENST00000487354 SETBP1Q9Y6X0 1596 aa23.91■■□□□ 1.42
MCF2L-228ENST00000487354 HDGFP51858 240 aaKnown RBP23.9■■□□□ 1.42
MCF2L-228ENST00000487354 ASXL1Q8IXJ9 1541 aa23.89■■□□□ 1.42
MCF2L-228ENST00000487354 C19orf44Q9H6X5 657 aa23.89■■□□□ 1.41
MCF2L-228ENST00000487354 SPHKAPQ2M3C7 1700 aa23.89■■□□□ 1.41
MCF2L-228ENST00000487354 ROCK1Q13464 1354 aa23.89■■□□□ 1.41
MCF2L-228ENST00000487354 CADPS2Q86UW7 1296 aa23.88■■□□□ 1.41
MCF2L-228ENST00000487354 DCCP43146 1447 aa23.87■■□□□ 1.41
MCF2L-228ENST00000487354 CHGAP10645 457 aaKnown RBP23.87■■□□□ 1.41
MCF2L-228ENST00000487354 BRINP3Q76B58 766 aa23.87■■□□□ 1.41
MCF2L-228ENST00000487354 C14orf37Q86TY3 774 aa23.85■■□□□ 1.41
MCF2L-228ENST00000487354 UPF1Q92900 1129 aaKnown RBP eCLIP23.85■■□□□ 1.41
MCF2L-228ENST00000487354 MST1RQ04912 1400 aa23.84■■□□□ 1.41
MCF2L-228ENST00000487354 NALCNQ8IZF0 1738 aa23.84■■□□□ 1.41
MCF2L-228ENST00000487354 ATF3P18847 181 aa23.83■■□□□ 1.41
MCF2L-228ENST00000487354 ZNF772Q68DY9 489 aaPredicted RBP23.83■■□□□ 1.41
MCF2L-228ENST00000487354 AMOTL2Q9Y2J4 779 aa23.83■■□□□ 1.41
MCF2L-228ENST00000487354 SETD5Q9C0A6 1442 aa23.83■■□□□ 1.4
MCF2L-228ENST00000487354 CDK12Q9NYV4 1490 aaPredicted RBP23.82■■□□□ 1.4
MCF2L-228ENST00000487354 MEX3CQ5U5Q3 659 aaKnown RBP23.81■■□□□ 1.4
MCF2L-228ENST00000487354 TRIM52Q96A61 297 aa23.81■■□□□ 1.4
MCF2L-228ENST00000487354 NUP155O75694 1391 aa23.78■■□□□ 1.4
MCF2L-228ENST00000487354 CLTCL1P53675 1640 aa23.78■■□□□ 1.4
MCF2L-228ENST00000487354 NEXMIFQ5QGS0 1516 aa23.78■■□□□ 1.4
MCF2L-228ENST00000487354 METP08581 1390 aa23.78■■□□□ 1.4
MCF2L-228ENST00000487354 LAMC1P11047 1609 aa23.77■■□□□ 1.4
MCF2L-228ENST00000487354 ADGRL3Q9HAR2 1447 aa23.75■■□□□ 1.39
MCF2L-228ENST00000487354 AFF2P51816 1311 aa23.73■■□□□ 1.39
MCF2L-228ENST00000487354 RGS12O14924 1447 aa23.73■■□□□ 1.39
MCF2L-228ENST00000487354 NUTM2BA6NNL0 878 aaPredicted RBP23.72■■□□□ 1.39
MCF2L-228ENST00000487354 NUTM2EB1AL46 878 aaPredicted RBP23.72■■□□□ 1.39
MCF2L-228ENST00000487354 RXRBP28702 533 aa23.72■■□□□ 1.39
MCF2L-228ENST00000487354 NUTM2AQ8IVF1 878 aaPredicted RBP23.72■■□□□ 1.39
MCF2L-228ENST00000487354 PNPLA6Q8IY17 1366 aa23.72■■□□□ 1.39
MCF2L-228ENST00000487354 KIF1BO60333 1816 aa23.69■■□□□ 1.38
MCF2L-228ENST00000487354 DDX17Q92841 729 aaKnown RBP23.69■■□□□ 1.38
MCF2L-228ENST00000487354 C1orf167Q5SNV9 1468 aa23.65■■□□□ 1.38
MCF2L-228ENST00000487354 PTCH1Q13635 1447 aa23.63■■□□□ 1.37
MCF2L-228ENST00000487354 LRRC59Q96AG4 307 aaKnown RBP23.63■■□□□ 1.37
MCF2L-228ENST00000487354 PRAG1Q86YV5 1406 aa23.62■■□□□ 1.37
MCF2L-228ENST00000487354 C8orf37Q96NL8 207 aa23.61■■□□□ 1.37
MCF2L-228ENST00000487354 COL22A1Q8NFW1 1626 aaPredicted RBP23.61■■□□□ 1.37
MCF2L-228ENST00000487354 ITGAEP38570 1179 aa23.6■■□□□ 1.37
MCF2L-228ENST00000487354 ZNF326Q5BKZ1 582 aaKnown RBP23.6■■□□□ 1.37
MCF2L-228ENST00000487354 PPLO60437 1756 aa23.59■■□□□ 1.37
MCF2L-228ENST00000487354 SRCAPQ6ZRS2 3230 aa23.59■■□□□ 1.37
MCF2L-228ENST00000487354 ROBO2Q9HCK4 1378 aa23.58■■□□□ 1.37
MCF2L-228ENST00000487354 RBM6P78332 1123 aaKnown RBP23.57■■□□□ 1.36
MCF2L-228ENST00000487354 QTRT2Q9H974 415 aaKnown RBP23.57■■□□□ 1.36
MCF2L-228ENST00000487354 SOS2Q07890 1332 aaPredicted RBP23.56■■□□□ 1.36
MCF2L-228ENST00000487354 MARF1Q9Y4F3 1742 aaKnown RBP23.55■■□□□ 1.36
MCF2L-228ENST00000487354 EP400Q96L91 3159 aa23.54■■□□□ 1.36
MCF2L-228ENST00000487354 NAIPQ13075 1403 aa23.52■■□□□ 1.36
MCF2L-228ENST00000487354 ORAI2Q96SN7 254 aa23.52■■□□□ 1.36
MCF2L-228ENST00000487354 ADAMTS2O95450 1211 aa23.51■■□□□ 1.35
MCF2L-228ENST00000487354 CDC42BPGQ6DT37 1551 aa23.51■■□□□ 1.35
MCF2L-228ENST00000487354 MYOM2P54296 1465 aa23.5■■□□□ 1.35
MCF2L-228ENST00000487354 ATRNO75882 1429 aa23.5■■□□□ 1.35
MCF2L-228ENST00000487354 PXDNQ92626 1479 aa23.48■■□□□ 1.35
MCF2L-228ENST00000487354 PPARGC1BQ86YN6 1023 aaKnown RBP23.47■■□□□ 1.35
MCF2L-228ENST00000487354 NGLY1Q96IV0 654 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms