RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 MED14O60244 1454 aa17.43■□□□□ 0.38
HPS4-214ENST00000485842 ZFYVE9O95405 1425 aa17.42■□□□□ 0.38
HPS4-214ENST00000485842 PPP1R15AO75807 674 aaPredicted RBP17.42■□□□□ 0.38
HPS4-214ENST00000485842 NUTM2DQ5VT03 806 aaPredicted RBP17.4■□□□□ 0.38
HPS4-214ENST00000485842 PCGF6Q9BYE7 350 aa17.4■□□□□ 0.38
HPS4-214ENST00000485842 SENP3Q9H4L4 574 aaPredicted RBP17.4■□□□□ 0.38
HPS4-214ENST00000485842 ANKRD30BQ9BXX2 1392 aa17.39■□□□□ 0.37
HPS4-214ENST00000485842 BCANQ96GW7 911 aa17.38■□□□□ 0.37
HPS4-214ENST00000485842 NEXMIFQ5QGS0 1516 aa17.37■□□□□ 0.37
HPS4-214ENST00000485842 HDGFP51858 240 aaKnown RBP17.37■□□□□ 0.37
HPS4-214ENST00000485842 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.37■□□□□ 0.37
HPS4-214ENST00000485842 PLEKHG1Q9ULL1 1385 aa17.35■□□□□ 0.37
HPS4-214ENST00000485842 SPATA31E1Q6ZUB1 1445 aa17.35■□□□□ 0.37
HPS4-214ENST00000485842 PPLO60437 1756 aa17.34■□□□□ 0.37
HPS4-214ENST00000485842 RGL3Q3MIN7 710 aa17.34■□□□□ 0.37
HPS4-214ENST00000485842 ZNF335Q9H4Z2 1342 aaPredicted RBP17.34■□□□□ 0.37
HPS4-214ENST00000485842 DHX57Q6P158 1386 aaKnown RBP17.33■□□□□ 0.36
HPS4-214ENST00000485842 SLC26A8Q96RN1 970 aa17.32■□□□□ 0.36
HPS4-214ENST00000485842 IFT172Q9UG01 1749 aa17.31■□□□□ 0.36
HPS4-214ENST00000485842 RPGRIP1LQ68CZ1 1315 aa17.3■□□□□ 0.36
HPS4-214ENST00000485842 LTBP4Q8N2S1 1624 aa17.3■□□□□ 0.36
HPS4-214ENST00000485842 NRXN3Q9Y4C0 1643 aa17.29■□□□□ 0.36
HPS4-214ENST00000485842 ADAMTS13Q76LX8 1427 aa17.28■□□□□ 0.36
HPS4-214ENST00000485842 STRCP1A6NGW2 1772 aa17.28■□□□□ 0.36
HPS4-214ENST00000485842 DIP2AQ14689 1571 aa17.28■□□□□ 0.36
HPS4-214ENST00000485842 SETBP1Q9Y6X0 1596 aa17.28■□□□□ 0.36
HPS4-214ENST00000485842 VGFO15240 615 aaPredicted RBP17.26■□□□□ 0.35
HPS4-214ENST00000485842 CPS1P31327 1500 aa17.25■□□□□ 0.35
HPS4-214ENST00000485842 ADGRF5Q8IZF2 1346 aa17.23■□□□□ 0.35
HPS4-214ENST00000485842 CERKQ8TCT0 537 aa17.23■□□□□ 0.35
HPS4-214ENST00000485842 TBX22Q9Y458 520 aa17.23■□□□□ 0.35
HPS4-214ENST00000485842 SIN3AQ96ST3 1273 aa17.22■□□□□ 0.35
HPS4-214ENST00000485842 MYOM2P54296 1465 aa17.22■□□□□ 0.35
HPS4-214ENST00000485842 NWD1Q149M9 1564 aa17.22■□□□□ 0.35
HPS4-214ENST00000485842 CHD2O14647 1828 aaKnown RBP17.21■□□□□ 0.35
HPS4-214ENST00000485842 SETD1AO15047 1707 aaKnown RBP17.21■□□□□ 0.35
HPS4-214ENST00000485842 NEUROD1Q13562 356 aa17.2■□□□□ 0.34
HPS4-214ENST00000485842 ALKQ9UM73 1620 aa17.2■□□□□ 0.34
HPS4-214ENST00000485842 KCNA6P17658 529 aa17.19■□□□□ 0.34
HPS4-214ENST00000485842 DCAF11Q8TEB1 546 aa17.19■□□□□ 0.34
HPS4-214ENST00000485842 KDM2AQ9Y2K7 1162 aa17.19■□□□□ 0.34
HPS4-214ENST00000485842 METP08581 1390 aa17.18■□□□□ 0.34
HPS4-214ENST00000485842 LRRC7Q96NW7 1537 aa17.18■□□□□ 0.34
HPS4-214ENST00000485842 PIK3C2GO75747 1445 aa17.18■□□□□ 0.34
HPS4-214ENST00000485842 NKTRP30414 1462 aaKnown RBP17.18■□□□□ 0.34
HPS4-214ENST00000485842 NRXN1Q9ULB1 1477 aa17.18■□□□□ 0.34
HPS4-214ENST00000485842 PIK3R4Q99570 1358 aa17.17■□□□□ 0.34
HPS4-214ENST00000485842 PTPRUQ92729 1446 aa17.17■□□□□ 0.34
HPS4-214ENST00000485842 XRN1Q8IZH2 1706 aaKnown RBP17.16■□□□□ 0.34
HPS4-214ENST00000485842 LAMC1P11047 1609 aa17.15■□□□□ 0.34
HPS4-214ENST00000485842 IQSEC2Q5JU85 1478 aa17.15■□□□□ 0.34
HPS4-214ENST00000485842 XIRP1Q702N8 1843 aaKnown RBP17.14■□□□□ 0.34
HPS4-214ENST00000485842 PROSER2Q86WR7 435 aaPredicted RBP17.14■□□□□ 0.33
HPS4-214ENST00000485842 AMOTL2Q9Y2J4 779 aa17.14■□□□□ 0.33
HPS4-214ENST00000485842 ASXL1Q8IXJ9 1541 aa17.13■□□□□ 0.33
HPS4-214ENST00000485842 TMEM94Q12767 1356 aa17.13■□□□□ 0.33
HPS4-214ENST00000485842 RBM33Q96EV2 1170 aaKnown RBP17.12■□□□□ 0.33
HPS4-214ENST00000485842 CFAP70Q5T0N1 1121 aa17.11■□□□□ 0.33
HPS4-214ENST00000485842 L3MBTL2Q969R5 705 aa17.11■□□□□ 0.33
HPS4-214ENST00000485842 TONSLQ96HA7 1378 aa17.1■□□□□ 0.33
HPS4-214ENST00000485842 TMEM132EQ6IEE7 984 aa17.09■□□□□ 0.33
HPS4-214ENST00000485842 STAC3Q96MF2 364 aa17.09■□□□□ 0.33
HPS4-214ENST00000485842 C14orf93Q9H972 538 aaKnown RBP17.09■□□□□ 0.33
HPS4-214ENST00000485842 C14orf37Q86TY3 774 aa17.08■□□□□ 0.32
HPS4-214ENST00000485842 CCER1Q8TC90 406 aaPredicted RBP17.08■□□□□ 0.32
HPS4-214ENST00000485842 PRAG1Q86YV5 1406 aa17.07■□□□□ 0.32
HPS4-214ENST00000485842 UBAP1LF5GYI3 381 aa17.07■□□□□ 0.32
HPS4-214ENST00000485842 STK26Q9P289 416 aa17.07■□□□□ 0.32
HPS4-214ENST00000485842 KNDC1Q76NI1 1749 aa17.07■□□□□ 0.32
HPS4-214ENST00000485842 PTCH1Q13635 1447 aa17.06■□□□□ 0.32
HPS4-214ENST00000485842 LRPPRCP42704 1394 aaKnown RBP17.06■□□□□ 0.32
HPS4-214ENST00000485842 FBXO41Q8TF61 875 aa17.06■□□□□ 0.32
HPS4-214ENST00000485842 YTHDC2Q9H6S0 1430 aaKnown RBP17.05■□□□□ 0.32
HPS4-214ENST00000485842 ADGRB1O14514 1584 aa17.05■□□□□ 0.32
HPS4-214ENST00000485842 MSH6P52701 1360 aa17.04■□□□□ 0.32
HPS4-214ENST00000485842 ROBO2Q9HCK4 1378 aa17.04■□□□□ 0.32
HPS4-214ENST00000485842 KIAA1210Q9ULL0 1709 aa17.04■□□□□ 0.32
HPS4-214ENST00000485842 CLSPNQ9HAW4 1339 aa17.03■□□□□ 0.32
HPS4-214ENST00000485842 TECPR2O15040 1411 aa17.03■□□□□ 0.32
HPS4-214ENST00000485842 NALCNQ8IZF0 1738 aa17.02■□□□□ 0.32
HPS4-214ENST00000485842 NCOA3Q9Y6Q9 1424 aa17.02■□□□□ 0.31
HPS4-214ENST00000485842 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.01■□□□□ 0.31
HPS4-214ENST00000485842 SCAF1Q9H7N4 1312 aaKnown RBP17.01■□□□□ 0.31
HPS4-214ENST00000485842 TOM1O60784 492 aa17.01■□□□□ 0.31
HPS4-214ENST00000485842 ABCC11Q96J66 1382 aa17.01■□□□□ 0.31
HPS4-214ENST00000485842 TRPM1Q7Z4N2 1603 aa17■□□□□ 0.31
HPS4-214ENST00000485842 PIP4K2BP78356 416 aa17■□□□□ 0.31
HPS4-214ENST00000485842 ADGRL3Q9HAR2 1447 aa17■□□□□ 0.31
HPS4-214ENST00000485842 ILDR1Q86SU0 546 aaPredicted RBP16.99■□□□□ 0.31
HPS4-214ENST00000485842 WAPLQ7Z5K2 1190 aa16.98■□□□□ 0.31
HPS4-214ENST00000485842 PLEKHH1Q9ULM0 1364 aa16.98■□□□□ 0.31
HPS4-214ENST00000485842 DLC1Q96QB1 1528 aa16.97■□□□□ 0.31
HPS4-214ENST00000485842 NBPF1Q3BBV0 1214 aa16.97■□□□□ 0.31
HPS4-214ENST00000485842 C19orf44Q9H6X5 657 aa16.97■□□□□ 0.31
HPS4-214ENST00000485842 TRAK1Q9UPV9 953 aa16.97■□□□□ 0.31
HPS4-214ENST00000485842 FAM135BQ49AJ0 1406 aa16.96■□□□□ 0.31
HPS4-214ENST00000485842 ARHGEF28Q8N1W1 1705 aaKnown RBP16.96■□□□□ 0.31
HPS4-214ENST00000485842 ATF3P18847 181 aa16.96■□□□□ 0.31
HPS4-214ENST00000485842 NBPF8Q3BBV2 869 aa16.96■□□□□ 0.31
HPS4-214ENST00000485842 SAFB2Q14151 953 aaKnown RBP eCLIP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms