RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 TRPM2O94759 1503 aa23.43■■□□□ 1.34
CCDC28B-205ENST00000483009 PLEKHG1Q9ULL1 1385 aa23.42■■□□□ 1.34
CCDC28B-205ENST00000483009 ACIN1Q9UKV3 1341 aaKnown RBP23.41■■□□□ 1.34
CCDC28B-205ENST00000483009 BCANQ96GW7 911 aa23.41■■□□□ 1.34
CCDC28B-205ENST00000483009 SLC26A8Q96RN1 970 aa23.41■■□□□ 1.34
CCDC28B-205ENST00000483009 MYO5BQ9ULV0 1848 aa23.39■■□□□ 1.33
CCDC28B-205ENST00000483009 UBAP1LF5GYI3 381 aa23.39■■□□□ 1.33
CCDC28B-205ENST00000483009 NUTM2DQ5VT03 806 aaPredicted RBP23.37■■□□□ 1.33
CCDC28B-205ENST00000483009 MPHOSPH9Q99550 1183 aa23.37■■□□□ 1.33
CCDC28B-205ENST00000483009 LRRC7Q96NW7 1537 aa23.37■■□□□ 1.33
CCDC28B-205ENST00000483009 CLTCL1P53675 1640 aa23.37■■□□□ 1.33
CCDC28B-205ENST00000483009 KCNA6P17658 529 aa23.35■■□□□ 1.33
CCDC28B-205ENST00000483009 ZNF326Q5BKZ1 582 aaKnown RBP23.35■■□□□ 1.33
CCDC28B-205ENST00000483009 SENP3Q9H4L4 574 aaPredicted RBP23.35■■□□□ 1.33
CCDC28B-205ENST00000483009 RAB3GAP2Q9H2M9 1393 aa23.35■■□□□ 1.33
CCDC28B-205ENST00000483009 STRCP1A6NGW2 1772 aa23.35■■□□□ 1.33
CCDC28B-205ENST00000483009 FOXD1Q16676 465 aa23.34■■□□□ 1.33
CCDC28B-205ENST00000483009 TBX22Q9Y458 520 aa23.32■■□□□ 1.32
CCDC28B-205ENST00000483009 TOM1O60784 492 aa23.31■■□□□ 1.32
CCDC28B-205ENST00000483009 ADAMTS13Q76LX8 1427 aa23.31■■□□□ 1.32
CCDC28B-205ENST00000483009 NWD1Q149M9 1564 aa23.27■■□□□ 1.32
CCDC28B-205ENST00000483009 CCDC144AA2RUR9 1427 aa23.26■■□□□ 1.31
CCDC28B-205ENST00000483009 NKTRP30414 1462 aaKnown RBP23.26■■□□□ 1.31
CCDC28B-205ENST00000483009 DIP2AQ14689 1571 aa23.26■■□□□ 1.31
CCDC28B-205ENST00000483009 TMEM94Q12767 1356 aa23.26■■□□□ 1.31
CCDC28B-205ENST00000483009 NEXMIFQ5QGS0 1516 aa23.25■■□□□ 1.31
CCDC28B-205ENST00000483009 PROSER2Q86WR7 435 aaPredicted RBP23.25■■□□□ 1.31
CCDC28B-205ENST00000483009 PIK3R4Q99570 1358 aa23.25■■□□□ 1.31
CCDC28B-205ENST00000483009 HRCP23327 699 aa23.23■■□□□ 1.31
CCDC28B-205ENST00000483009 RPGRIP1LQ68CZ1 1315 aa23.23■■□□□ 1.31
CCDC28B-205ENST00000483009 KIF1BO60333 1816 aa23.22■■□□□ 1.31
CCDC28B-205ENST00000483009 PIP4K2BP78356 416 aa23.22■■□□□ 1.31
CCDC28B-205ENST00000483009 SCAF1Q9H7N4 1312 aaKnown RBP23.22■■□□□ 1.31
CCDC28B-205ENST00000483009 SETBP1Q9Y6X0 1596 aa23.22■■□□□ 1.31
CCDC28B-205ENST00000483009 VGFO15240 615 aaPredicted RBP23.2■■□□□ 1.3
CCDC28B-205ENST00000483009 ALKQ9UM73 1620 aa23.19■■□□□ 1.3
CCDC28B-205ENST00000483009 RBM33Q96EV2 1170 aaKnown RBP23.18■■□□□ 1.3
CCDC28B-205ENST00000483009 SPATA31E1Q6ZUB1 1445 aa23.17■■□□□ 1.3
CCDC28B-205ENST00000483009 NRXN3Q9Y4C0 1643 aa23.17■■□□□ 1.3
CCDC28B-205ENST00000483009 CHD2O14647 1828 aaKnown RBP23.16■■□□□ 1.3
CCDC28B-205ENST00000483009 PTPRUQ92729 1446 aa23.16■■□□□ 1.3
CCDC28B-205ENST00000483009 AMOTL2Q9Y2J4 779 aa23.15■■□□□ 1.3
CCDC28B-205ENST00000483009 RGL3Q3MIN7 710 aa23.14■■□□□ 1.29
CCDC28B-205ENST00000483009 METP08581 1390 aa23.14■■□□□ 1.29
CCDC28B-205ENST00000483009 XIRP1Q702N8 1843 aaKnown RBP23.13■■□□□ 1.29
CCDC28B-205ENST00000483009 NCOA3Q9Y6Q9 1424 aa23.13■■□□□ 1.29
CCDC28B-205ENST00000483009 MSH6P52701 1360 aa23.13■■□□□ 1.29
CCDC28B-205ENST00000483009 HSPA1LP34931 641 aa23.11■■□□□ 1.29
CCDC28B-205ENST00000483009 ANKRD30BQ9BXX2 1392 aa23.11■■□□□ 1.29
CCDC28B-205ENST00000483009 C14orf37Q86TY3 774 aa23.08■■□□□ 1.29
CCDC28B-205ENST00000483009 ADGRF5Q8IZF2 1346 aa23.08■■□□□ 1.28
CCDC28B-205ENST00000483009 PPLO60437 1756 aa23.07■■□□□ 1.28
CCDC28B-205ENST00000483009 XRN1Q8IZH2 1706 aaKnown RBP23.06■■□□□ 1.28
CCDC28B-205ENST00000483009 FAM135BQ49AJ0 1406 aa23.05■■□□□ 1.28
CCDC28B-205ENST00000483009 C19orf44Q9H6X5 657 aa23.03■■□□□ 1.28
CCDC28B-205ENST00000483009 CADPS2Q86UW7 1296 aa23■■□□□ 1.27
CCDC28B-205ENST00000483009 SLAIN2Q9P270 581 aa23■■□□□ 1.27
CCDC28B-205ENST00000483009 PTCH1Q13635 1447 aa22.99■■□□□ 1.27
CCDC28B-205ENST00000483009 SETD1AO15047 1707 aaKnown RBP22.99■■□□□ 1.27
CCDC28B-205ENST00000483009 PIK3C2GO75747 1445 aa22.99■■□□□ 1.27
CCDC28B-205ENST00000483009 PRAG1Q86YV5 1406 aa22.99■■□□□ 1.27
CCDC28B-205ENST00000483009 ATF3P18847 181 aa22.98■■□□□ 1.27
CCDC28B-205ENST00000483009 IFT172Q9UG01 1749 aa22.97■■□□□ 1.27
CCDC28B-205ENST00000483009 DCCP43146 1447 aa22.97■■□□□ 1.27
CCDC28B-205ENST00000483009 MYOM2P54296 1465 aa22.97■■□□□ 1.27
CCDC28B-205ENST00000483009 ROBO2Q9HCK4 1378 aa22.96■■□□□ 1.27
CCDC28B-205ENST00000483009 ADGRL3Q9HAR2 1447 aa22.95■■□□□ 1.26
CCDC28B-205ENST00000483009 NRXN1Q9ULB1 1477 aa22.95■■□□□ 1.26
CCDC28B-205ENST00000483009 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.93■■□□□ 1.26
CCDC28B-205ENST00000483009 LRPPRCP42704 1394 aaKnown RBP22.92■■□□□ 1.26
CCDC28B-205ENST00000483009 C14orf93Q9H972 538 aaKnown RBP22.92■■□□□ 1.26
CCDC28B-205ENST00000483009 ROBO1Q9Y6N7 1651 aa22.92■■□□□ 1.26
CCDC28B-205ENST00000483009 DISP3Q9P2K9 1392 aa22.91■■□□□ 1.26
CCDC28B-205ENST00000483009 TMEM132EQ6IEE7 984 aa22.9■■□□□ 1.26
CCDC28B-205ENST00000483009 ASXL1Q8IXJ9 1541 aa22.9■■□□□ 1.26
CCDC28B-205ENST00000483009 STK26Q9P289 416 aa22.89■■□□□ 1.25
CCDC28B-205ENST00000483009 TECPR2O15040 1411 aa22.89■■□□□ 1.25
CCDC28B-205ENST00000483009 ABCC11Q96J66 1382 aa22.89■■□□□ 1.25
CCDC28B-205ENST00000483009 CFAP70Q5T0N1 1121 aa22.88■■□□□ 1.25
CCDC28B-205ENST00000483009 STAC3Q96MF2 364 aa22.88■■□□□ 1.25
CCDC28B-205ENST00000483009 DCAF11Q8TEB1 546 aa22.87■■□□□ 1.25
CCDC28B-205ENST00000483009 MST1RQ04912 1400 aa22.87■■□□□ 1.25
CCDC28B-205ENST00000483009 YTHDC2Q9H6S0 1430 aaKnown RBP22.86■■□□□ 1.25
CCDC28B-205ENST00000483009 TRIM26Q12899 539 aaPredicted RBP22.86■■□□□ 1.25
CCDC28B-205ENST00000483009 KDM2AQ9Y2K7 1162 aa22.86■■□□□ 1.25
CCDC28B-205ENST00000483009 DHX57Q6P158 1386 aaKnown RBP22.86■■□□□ 1.25
CCDC28B-205ENST00000483009 BRINP3Q76B58 766 aa22.84■■□□□ 1.25
CCDC28B-205ENST00000483009 NALCNQ8IZF0 1738 aa22.83■■□□□ 1.25
CCDC28B-205ENST00000483009 LAMC1P11047 1609 aa22.82■■□□□ 1.24
CCDC28B-205ENST00000483009 WAPLQ7Z5K2 1190 aa22.81■■□□□ 1.24
CCDC28B-205ENST00000483009 SIRT1Q96EB6 747 aa22.81■■□□□ 1.24
CCDC28B-205ENST00000483009 MED1Q15648 1581 aaPredicted RBP22.8■■□□□ 1.24
CCDC28B-205ENST00000483009 PLEKHH1Q9ULM0 1364 aa22.79■■□□□ 1.24
CCDC28B-205ENST00000483009 C1orf167Q5SNV9 1468 aa22.79■■□□□ 1.24
CCDC28B-205ENST00000483009 KNDC1Q76NI1 1749 aa22.78■■□□□ 1.24
CCDC28B-205ENST00000483009 AHDC1Q5TGY3 1603 aaPredicted RBP22.78■■□□□ 1.24
CCDC28B-205ENST00000483009 JCADQ9P266 1359 aa22.76■■□□□ 1.23
CCDC28B-205ENST00000483009 ADGRB1O14514 1584 aa22.76■■□□□ 1.23
CCDC28B-205ENST00000483009 PHLPP1O60346 1717 aa22.76■■□□□ 1.23
CCDC28B-205ENST00000483009 CDC42BPGQ6DT37 1551 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms