RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 APLP2Q06481 763 aa17.71■□□□□ 0.43
TTC28-206ENST00000480563 NWD1Q149M9 1564 aa17.7■□□□□ 0.42
TTC28-206ENST00000480563 ADGRB3O60242 1522 aa17.69■□□□□ 0.42
TTC28-206ENST00000480563 HDGFP51858 240 aaKnown RBP17.69■□□□□ 0.42
TTC28-206ENST00000480563 PPP1R15AO75807 674 aaPredicted RBP17.68■□□□□ 0.42
TTC28-206ENST00000480563 FGD6Q6ZV73 1430 aa17.68■□□□□ 0.42
TTC28-206ENST00000480563 PLEKHG1Q9ULL1 1385 aa17.66■□□□□ 0.42
TTC28-206ENST00000480563 TBX22Q9Y458 520 aa17.66■□□□□ 0.42
TTC28-206ENST00000480563 PHLPP1O60346 1717 aa17.66■□□□□ 0.42
TTC28-206ENST00000480563 C14orf37Q86TY3 774 aa17.65■□□□□ 0.42
TTC28-206ENST00000480563 ZFYVE9O95405 1425 aa17.64■□□□□ 0.42
TTC28-206ENST00000480563 RIMS2Q9UQ26 1411 aa17.64■□□□□ 0.42
TTC28-206ENST00000480563 MEX3CQ5U5Q3 659 aaKnown RBP17.64■□□□□ 0.41
TTC28-206ENST00000480563 SPATA31A6Q5VVP1 1343 aa17.64■□□□□ 0.41
TTC28-206ENST00000480563 ZNF772Q68DY9 489 aaPredicted RBP17.63■□□□□ 0.41
TTC28-206ENST00000480563 NCOA3Q9Y6Q9 1424 aa17.63■□□□□ 0.41
TTC28-206ENST00000480563 CHGAP10645 457 aaKnown RBP17.62■□□□□ 0.41
TTC28-206ENST00000480563 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.62■□□□□ 0.41
TTC28-206ENST00000480563 RPRD2Q5VT52 1461 aaKnown RBP17.62■□□□□ 0.41
TTC28-206ENST00000480563 SETD1AO15047 1707 aaKnown RBP17.61■□□□□ 0.41
TTC28-206ENST00000480563 CADPS2Q86UW7 1296 aa17.61■□□□□ 0.41
TTC28-206ENST00000480563 UPF1Q92900 1129 aaKnown RBP eCLIP17.61■□□□□ 0.41
TTC28-206ENST00000480563 C19orf44Q9H6X5 657 aa17.61■□□□□ 0.41
TTC28-206ENST00000480563 ATF3P18847 181 aa17.6■□□□□ 0.41
TTC28-206ENST00000480563 NUTM2DQ5VT03 806 aaPredicted RBP17.6■□□□□ 0.41
TTC28-206ENST00000480563 TRIM52Q96A61 297 aa17.6■□□□□ 0.41
TTC28-206ENST00000480563 LRP6O75581 1613 aa17.6■□□□□ 0.41
TTC28-206ENST00000480563 COL16A1Q07092 1604 aaPredicted RBP17.6■□□□□ 0.41
TTC28-206ENST00000480563 CHD2O14647 1828 aaKnown RBP17.6■□□□□ 0.41
TTC28-206ENST00000480563 ADGRL2O95490 1459 aa17.59■□□□□ 0.41
TTC28-206ENST00000480563 ANKRD50Q9ULJ7 1429 aa17.59■□□□□ 0.41
TTC28-206ENST00000480563 FAM50AQ14320 339 aaKnown RBP17.58■□□□□ 0.4
TTC28-206ENST00000480563 ADAMTS13Q76LX8 1427 aa17.56■□□□□ 0.4
TTC28-206ENST00000480563 RXRBP28702 533 aa17.56■□□□□ 0.4
TTC28-206ENST00000480563 TMEM131LA2VDJ0 1609 aa17.56■□□□□ 0.4
TTC28-206ENST00000480563 PIK3R4Q99570 1358 aa17.54■□□□□ 0.4
TTC28-206ENST00000480563 NUTM2BA6NNL0 878 aaPredicted RBP17.54■□□□□ 0.4
TTC28-206ENST00000480563 NUTM2EB1AL46 878 aaPredicted RBP17.54■□□□□ 0.4
TTC28-206ENST00000480563 BRINP3Q76B58 766 aa17.54■□□□□ 0.4
TTC28-206ENST00000480563 NUTM2AQ8IVF1 878 aaPredicted RBP17.54■□□□□ 0.4
TTC28-206ENST00000480563 AMOTL2Q9Y2J4 779 aa17.54■□□□□ 0.4
TTC28-206ENST00000480563 MYO5BQ9ULV0 1848 aa17.54■□□□□ 0.4
TTC28-206ENST00000480563 GCC2Q8IWJ2 1684 aa17.53■□□□□ 0.4
TTC28-206ENST00000480563 AHDC1Q5TGY3 1603 aaPredicted RBP17.53■□□□□ 0.4
TTC28-206ENST00000480563 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.52■□□□□ 0.39
TTC28-206ENST00000480563 SHPRHQ149N8 1683 aa17.49■□□□□ 0.39
TTC28-206ENST00000480563 DIP2AQ14689 1571 aa17.49■□□□□ 0.39
TTC28-206ENST00000480563 PTPRUQ92729 1446 aa17.48■□□□□ 0.39
TTC28-206ENST00000480563 AFF2P51816 1311 aa17.47■□□□□ 0.39
TTC28-206ENST00000480563 LRRC59Q96AG4 307 aaKnown RBP17.46■□□□□ 0.39
TTC28-206ENST00000480563 TRPM2O94759 1503 aa17.46■□□□□ 0.39
TTC28-206ENST00000480563 CDK12Q9NYV4 1490 aaPredicted RBP17.45■□□□□ 0.38
TTC28-206ENST00000480563 DCCP43146 1447 aa17.45■□□□□ 0.38
TTC28-206ENST00000480563 SETD5Q9C0A6 1442 aa17.44■□□□□ 0.38
TTC28-206ENST00000480563 UNC13BO14795 1591 aa17.44■□□□□ 0.38
TTC28-206ENST00000480563 E9PCH4 1651 aa17.43■□□□□ 0.38
TTC28-206ENST00000480563 C8orf37Q96NL8 207 aa17.43■□□□□ 0.38
TTC28-206ENST00000480563 QTRT2Q9H974 415 aaKnown RBP17.43■□□□□ 0.38
TTC28-206ENST00000480563 ASXL1Q8IXJ9 1541 aa17.42■□□□□ 0.38
TTC28-206ENST00000480563 NUP155O75694 1391 aa17.42■□□□□ 0.38
TTC28-206ENST00000480563 MST1RQ04912 1400 aa17.42■□□□□ 0.38
TTC28-206ENST00000480563 RBM6P78332 1123 aaKnown RBP17.41■□□□□ 0.38
TTC28-206ENST00000480563 DDX17Q92841 729 aaKnown RBP17.41■□□□□ 0.38
TTC28-206ENST00000480563 ROCK1Q13464 1354 aa17.4■□□□□ 0.38
TTC28-206ENST00000480563 ZNF326Q5BKZ1 582 aaKnown RBP17.39■□□□□ 0.37
TTC28-206ENST00000480563 METP08581 1390 aa17.39■□□□□ 0.37
TTC28-206ENST00000480563 IQGAP3Q86VI3 1631 aa17.38■□□□□ 0.37
TTC28-206ENST00000480563 PNPLA6Q8IY17 1366 aa17.38■□□□□ 0.37
TTC28-206ENST00000480563 NGLY1Q96IV0 654 aa17.37■□□□□ 0.37
TTC28-206ENST00000480563 RGS12O14924 1447 aa17.37■□□□□ 0.37
TTC28-206ENST00000480563 ADAMTS2O95450 1211 aa17.36■□□□□ 0.37
TTC28-206ENST00000480563 XRN1Q8IZH2 1706 aaKnown RBP17.35■□□□□ 0.37
TTC28-206ENST00000480563 ITGAEP38570 1179 aa17.35■□□□□ 0.37
TTC28-206ENST00000480563 SETBP1Q9Y6X0 1596 aa17.35■□□□□ 0.37
TTC28-206ENST00000480563 NHSL1Q5SYE7 1610 aa17.35■□□□□ 0.37
TTC28-206ENST00000480563 NRXN3Q9Y4C0 1643 aa17.35■□□□□ 0.37
TTC28-206ENST00000480563 ADGRL3Q9HAR2 1447 aa17.34■□□□□ 0.37
TTC28-206ENST00000480563 USP21Q9UK80 565 aa17.3■□□□□ 0.36
TTC28-206ENST00000480563 C1orf167Q5SNV9 1468 aa17.3■□□□□ 0.36
TTC28-206ENST00000480563 ORAI2Q96SN7 254 aa17.29■□□□□ 0.36
TTC28-206ENST00000480563 ATAD2Q6PL18 1390 aa17.28■□□□□ 0.36
TTC28-206ENST00000480563 SOS2Q07890 1332 aaPredicted RBP17.28■□□□□ 0.36
TTC28-206ENST00000480563 TRPC5Q9UL62 973 aaPredicted RBP17.28■□□□□ 0.36
TTC28-206ENST00000480563 FNBP4Q8N3X1 1017 aaPredicted RBP17.26■□□□□ 0.35
TTC28-206ENST00000480563 SPHKAPQ2M3C7 1700 aa17.24■□□□□ 0.35
TTC28-206ENST00000480563 NALCNQ8IZF0 1738 aa17.24■□□□□ 0.35
TTC28-206ENST00000480563 FOXD1Q16676 465 aa17.24■□□□□ 0.35
TTC28-206ENST00000480563 NEXMIFQ5QGS0 1516 aa17.24■□□□□ 0.35
TTC28-206ENST00000480563 PTCH1Q13635 1447 aa17.23■□□□□ 0.35
TTC28-206ENST00000480563 VGFO15240 615 aaPredicted RBP17.23■□□□□ 0.35
TTC28-206ENST00000480563 ZRANB1Q9UGI0 708 aa17.23■□□□□ 0.35
TTC28-206ENST00000480563 ROBO2Q9HCK4 1378 aa17.23■□□□□ 0.35
TTC28-206ENST00000480563 LAMC1P11047 1609 aa17.21■□□□□ 0.35
TTC28-206ENST00000480563 SRCAPQ6ZRS2 3230 aa17.21■□□□□ 0.34
TTC28-206ENST00000480563 CLTCL1P53675 1640 aa17.2■□□□□ 0.34
TTC28-206ENST00000480563 ATRNO75882 1429 aa17.2■□□□□ 0.34
TTC28-206ENST00000480563 CCDC125Q86Z20 511 aa17.19■□□□□ 0.34
TTC28-206ENST00000480563 ESCO1Q5FWF5 840 aa17.18■□□□□ 0.34
TTC28-206ENST00000480563 PPARGC1BQ86YN6 1023 aaKnown RBP17.18■□□□□ 0.34
TTC28-206ENST00000480563 NPHP3Q7Z494 1330 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms