RNA–Protein interactions for RNA: ENST00000476792.1

LIMK1-204, Transcript of LIM domain kinase 1, humanhuman

TSL 2

Gene LIMK1, Length 785 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-204ENST00000476792 TMEM131LA2VDJ0 1609 aa32.24■■■□□ 2.75
LIMK1-204ENST00000476792 RIMS2Q9UQ26 1411 aa32.24■■■□□ 2.75
LIMK1-204ENST00000476792 TRIM52Q96A61 297 aa32.23■■■□□ 2.75
LIMK1-204ENST00000476792 HDGFP51858 240 aaKnown RBP32.22■■■□□ 2.75
LIMK1-204ENST00000476792 NUTM2DQ5VT03 806 aaPredicted RBP32.22■■■□□ 2.75
LIMK1-204ENST00000476792 ZFYVE9O95405 1425 aa32.2■■■□□ 2.75
LIMK1-204ENST00000476792 HFM1A2PYH4 1435 aa32.18■■■□□ 2.74
LIMK1-204ENST00000476792 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.15■■■□□ 2.74
LIMK1-204ENST00000476792 KCNA6P17658 529 aa32.14■■■□□ 2.74
LIMK1-204ENST00000476792 PLEKHG1Q9ULL1 1385 aa32.14■■■□□ 2.74
LIMK1-204ENST00000476792 SPHKAPQ2M3C7 1700 aa32.12■■■□□ 2.73
LIMK1-204ENST00000476792 PROSER2Q86WR7 435 aaPredicted RBP32.1■■■□□ 2.73
LIMK1-204ENST00000476792 RBM33Q96EV2 1170 aaKnown RBP32.1■■■□□ 2.73
LIMK1-204ENST00000476792 HSPA1LP34931 641 aa32.09■■■□□ 2.73
LIMK1-204ENST00000476792 ZNF326Q5BKZ1 582 aaKnown RBP32.08■■■□□ 2.73
LIMK1-204ENST00000476792 ALKQ9UM73 1620 aa32.08■■■□□ 2.73
LIMK1-204ENST00000476792 SLC4A1APQ9BWU0 796 aaKnown RBP32.07■■■□□ 2.72
LIMK1-204ENST00000476792 TMEM94Q12767 1356 aa32.07■■■□□ 2.72
LIMK1-204ENST00000476792 DISP3Q9P2K9 1392 aa32.06■■■□□ 2.72
LIMK1-204ENST00000476792 XIRP1Q702N8 1843 aaKnown RBP32.04■■■□□ 2.72
LIMK1-204ENST00000476792 TBX22Q9Y458 520 aa32.02■■■□□ 2.72
LIMK1-204ENST00000476792 CLTCL1P53675 1640 aa32■■■□□ 2.71
LIMK1-204ENST00000476792 TRPM2O94759 1503 aa31.99■■■□□ 2.71
LIMK1-204ENST00000476792 ADAMTS13Q76LX8 1427 aa31.99■■■□□ 2.71
LIMK1-204ENST00000476792 NWD1Q149M9 1564 aa31.98■■■□□ 2.71
LIMK1-204ENST00000476792 NKTRP30414 1462 aaKnown RBP31.97■■■□□ 2.71
LIMK1-204ENST00000476792 FOXD1Q16676 465 aa31.96■■■□□ 2.71
LIMK1-204ENST00000476792 CHD2O14647 1828 aaKnown RBP31.94■■■□□ 2.7
LIMK1-204ENST00000476792 KIF1BO60333 1816 aa31.9■■■□□ 2.7
LIMK1-204ENST00000476792 DIP2AQ14689 1571 aa31.89■■■□□ 2.7
LIMK1-204ENST00000476792 MSH6P52701 1360 aa31.87■■■□□ 2.69
LIMK1-204ENST00000476792 C14orf37Q86TY3 774 aa31.87■■■□□ 2.69
LIMK1-204ENST00000476792 MPHOSPH9Q99550 1183 aa31.87■■■□□ 2.69
LIMK1-204ENST00000476792 AMOTL2Q9Y2J4 779 aa31.86■■■□□ 2.69
LIMK1-204ENST00000476792 PIK3R4Q99570 1358 aa31.85■■■□□ 2.69
LIMK1-204ENST00000476792 NEXMIFQ5QGS0 1516 aa31.84■■■□□ 2.69
LIMK1-204ENST00000476792 SETD5Q9C0A6 1442 aa31.83■■■□□ 2.69
LIMK1-204ENST00000476792 PTPRUQ92729 1446 aa31.82■■■□□ 2.68
LIMK1-204ENST00000476792 NRXN3Q9Y4C0 1643 aa31.82■■■□□ 2.68
LIMK1-204ENST00000476792 SETBP1Q9Y6X0 1596 aa31.81■■■□□ 2.68
LIMK1-204ENST00000476792 ILDR2Q71H61 639 aa31.79■■■□□ 2.68
LIMK1-204ENST00000476792 FAM135BQ49AJ0 1406 aa31.78■■■□□ 2.68
LIMK1-204ENST00000476792 METP08581 1390 aa31.78■■■□□ 2.68
LIMK1-204ENST00000476792 VGFO15240 615 aaPredicted RBP31.76■■■□□ 2.67
LIMK1-204ENST00000476792 SLAIN2Q9P270 581 aa31.76■■■□□ 2.67
LIMK1-204ENST00000476792 CCDC144AA2RUR9 1427 aa31.75■■■□□ 2.67
LIMK1-204ENST00000476792 RPGRIP1LQ68CZ1 1315 aa31.74■■■□□ 2.67
LIMK1-204ENST00000476792 RGL3Q3MIN7 710 aa31.73■■■□□ 2.67
LIMK1-204ENST00000476792 NCOA3Q9Y6Q9 1424 aa31.73■■■□□ 2.67
LIMK1-204ENST00000476792 RAB3GAP2Q9H2M9 1393 aa31.72■■■□□ 2.67
LIMK1-204ENST00000476792 ROBO1Q9Y6N7 1651 aa31.72■■■□□ 2.67
LIMK1-204ENST00000476792 C19orf44Q9H6X5 657 aa31.71■■■□□ 2.67
LIMK1-204ENST00000476792 MED1Q15648 1581 aaPredicted RBP31.71■■■□□ 2.67
LIMK1-204ENST00000476792 ACIN1Q9UKV3 1341 aaKnown RBP31.7■■■□□ 2.66
LIMK1-204ENST00000476792 ATF3P18847 181 aa31.69■■■□□ 2.66
LIMK1-204ENST00000476792 XRN1Q8IZH2 1706 aaKnown RBP31.67■■■□□ 2.66
LIMK1-204ENST00000476792 CADPS2Q86UW7 1296 aa31.66■■■□□ 2.66
LIMK1-204ENST00000476792 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.65■■■□□ 2.66
LIMK1-204ENST00000476792 PPLO60437 1756 aa31.65■■■□□ 2.66
LIMK1-204ENST00000476792 PHF23Q9BUL5 403 aaPredicted RBP31.62■■■□□ 2.65
LIMK1-204ENST00000476792 SPATA31E1Q6ZUB1 1445 aa31.6■■■□□ 2.65
LIMK1-204ENST00000476792 ADGRF5Q8IZF2 1346 aa31.6■■■□□ 2.65
LIMK1-204ENST00000476792 SETD1AO15047 1707 aaKnown RBP31.55■■■□□ 2.64
LIMK1-204ENST00000476792 PHLPP1O60346 1717 aa31.54■■■□□ 2.64
LIMK1-204ENST00000476792 ANKRD30BQ9BXX2 1392 aa31.53■■■□□ 2.64
LIMK1-204ENST00000476792 ROBO2Q9HCK4 1378 aa31.51■■■□□ 2.63
LIMK1-204ENST00000476792 DCCP43146 1447 aa31.5■■■□□ 2.63
LIMK1-204ENST00000476792 ADGRL3Q9HAR2 1447 aa31.5■■■□□ 2.63
LIMK1-204ENST00000476792 BRINP3Q76B58 766 aa31.49■■■□□ 2.63
LIMK1-204ENST00000476792 IFT172Q9UG01 1749 aa31.47■■■□□ 2.63
LIMK1-204ENST00000476792 STK26Q9P289 416 aa31.47■■■□□ 2.63
LIMK1-204ENST00000476792 PTCH1Q13635 1447 aa31.47■■■□□ 2.63
LIMK1-204ENST00000476792 SOCS7O14512 581 aa31.46■■■□□ 2.63
LIMK1-204ENST00000476792 MST1RQ04912 1400 aa31.45■■■□□ 2.63
LIMK1-204ENST00000476792 NALCNQ8IZF0 1738 aa31.45■■■□□ 2.63
LIMK1-204ENST00000476792 TMEM132EQ6IEE7 984 aa31.44■■■□□ 2.62
LIMK1-204ENST00000476792 HRCP23327 699 aa31.43■■■□□ 2.62
LIMK1-204ENST00000476792 JCADQ9P266 1359 aa31.43■■■□□ 2.62
LIMK1-204ENST00000476792 COL16A1Q07092 1604 aaPredicted RBP31.42■■■□□ 2.62
LIMK1-204ENST00000476792 PIK3C2GO75747 1445 aa31.4■■■□□ 2.62
LIMK1-204ENST00000476792 ASXL1Q8IXJ9 1541 aa31.39■■■□□ 2.61
LIMK1-204ENST00000476792 AHDC1Q5TGY3 1603 aaPredicted RBP31.38■■■□□ 2.61
LIMK1-204ENST00000476792 PRAG1Q86YV5 1406 aa31.37■■■□□ 2.61
LIMK1-204ENST00000476792 WAPLQ7Z5K2 1190 aa31.36■■■□□ 2.61
LIMK1-204ENST00000476792 DDX17Q92841 729 aaKnown RBP31.36■■■□□ 2.61
LIMK1-204ENST00000476792 RGS17Q9UGC6 210 aaPredicted RBP31.36■■■□□ 2.61
LIMK1-204ENST00000476792 LRPPRCP42704 1394 aaKnown RBP31.35■■■□□ 2.61
LIMK1-204ENST00000476792 CFAP70Q5T0N1 1121 aa31.34■■■□□ 2.61
LIMK1-204ENST00000476792 C14orf93Q9H972 538 aaKnown RBP31.33■■■□□ 2.61
LIMK1-204ENST00000476792 C1orf167Q5SNV9 1468 aa31.33■■■□□ 2.61
LIMK1-204ENST00000476792 KDM2AQ9Y2K7 1162 aa31.32■■■□□ 2.6
LIMK1-204ENST00000476792 MYOM2P54296 1465 aa31.31■■■□□ 2.6
LIMK1-204ENST00000476792 ORAI2Q96SN7 254 aa31.3■■■□□ 2.6
LIMK1-204ENST00000476792 ABCC11Q96J66 1382 aa31.3■■■□□ 2.6
LIMK1-204ENST00000476792 YTHDC2Q9H6S0 1430 aaKnown RBP31.29■■■□□ 2.6
LIMK1-204ENST00000476792 PLEKHH1Q9ULM0 1364 aa31.29■■■□□ 2.6
LIMK1-204ENST00000476792 NRXN1Q9ULB1 1477 aa31.28■■■□□ 2.6
LIMK1-204ENST00000476792 TECPR2O15040 1411 aa31.28■■■□□ 2.6
LIMK1-204ENST00000476792 DCAF11Q8TEB1 546 aa31.27■■■□□ 2.6
LIMK1-204ENST00000476792 SPATA31A6Q5VVP1 1343 aa31.26■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms