RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 SLC4A1APQ9BWU0 796 aaKnown RBP31.73■■■□□ 2.67
LIME1-204ENST00000476183 SENP3Q9H4L4 574 aaPredicted RBP31.73■■■□□ 2.67
LIME1-204ENST00000476183 CLTCL1P53675 1640 aa31.73■■■□□ 2.67
LIME1-204ENST00000476183 LRRC7Q96NW7 1537 aa31.73■■■□□ 2.67
LIME1-204ENST00000476183 PLEKHG1Q9ULL1 1385 aa31.72■■■□□ 2.67
LIME1-204ENST00000476183 NUTM2DQ5VT03 806 aaPredicted RBP31.71■■■□□ 2.67
LIME1-204ENST00000476183 PPP1R15AO75807 674 aaPredicted RBP31.7■■■□□ 2.67
LIME1-204ENST00000476183 HDGFP51858 240 aaKnown RBP31.7■■■□□ 2.67
LIME1-204ENST00000476183 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.68■■■□□ 2.66
LIME1-204ENST00000476183 BCANQ96GW7 911 aa31.67■■■□□ 2.66
LIME1-204ENST00000476183 SETD5Q9C0A6 1442 aa31.66■■■□□ 2.66
LIME1-204ENST00000476183 KCNA6P17658 529 aa31.63■■■□□ 2.65
LIME1-204ENST00000476183 FOXD1Q16676 465 aa31.63■■■□□ 2.65
LIME1-204ENST00000476183 XIRP1Q702N8 1843 aaKnown RBP31.61■■■□□ 2.65
LIME1-204ENST00000476183 ALKQ9UM73 1620 aa31.6■■■□□ 2.65
LIME1-204ENST00000476183 ADAMTS13Q76LX8 1427 aa31.6■■■□□ 2.65
LIME1-204ENST00000476183 KIF1BO60333 1816 aa31.59■■■□□ 2.65
LIME1-204ENST00000476183 ZNF326Q5BKZ1 582 aaKnown RBP31.59■■■□□ 2.65
LIME1-204ENST00000476183 MPHOSPH9Q99550 1183 aa31.59■■■□□ 2.65
LIME1-204ENST00000476183 NWD1Q149M9 1564 aa31.59■■■□□ 2.65
LIME1-204ENST00000476183 TOM1O60784 492 aa31.57■■■□□ 2.64
LIME1-204ENST00000476183 TBX22Q9Y458 520 aa31.57■■■□□ 2.64
LIME1-204ENST00000476183 RAB3GAP2Q9H2M9 1393 aa31.56■■■□□ 2.64
LIME1-204ENST00000476183 CHD2O14647 1828 aaKnown RBP31.55■■■□□ 2.64
LIME1-204ENST00000476183 NEXMIFQ5QGS0 1516 aa31.54■■■□□ 2.64
LIME1-204ENST00000476183 PIP4K2BP78356 416 aa31.53■■■□□ 2.64
LIME1-204ENST00000476183 DIP2AQ14689 1571 aa31.52■■■□□ 2.64
LIME1-204ENST00000476183 TMEM94Q12767 1356 aa31.52■■■□□ 2.64
LIME1-204ENST00000476183 NRXN3Q9Y4C0 1643 aa31.52■■■□□ 2.64
LIME1-204ENST00000476183 NKTRP30414 1462 aaKnown RBP31.52■■■□□ 2.64
LIME1-204ENST00000476183 PROSER2Q86WR7 435 aaPredicted RBP31.5■■■□□ 2.63
LIME1-204ENST00000476183 RBM33Q96EV2 1170 aaKnown RBP31.5■■■□□ 2.63
LIME1-204ENST00000476183 SCAF1Q9H7N4 1312 aaKnown RBP31.49■■■□□ 2.63
LIME1-204ENST00000476183 ACIN1Q9UKV3 1341 aaKnown RBP31.49■■■□□ 2.63
LIME1-204ENST00000476183 SETBP1Q9Y6X0 1596 aa31.48■■■□□ 2.63
LIME1-204ENST00000476183 PIK3R4Q99570 1358 aa31.44■■■□□ 2.62
LIME1-204ENST00000476183 CCDC144AA2RUR9 1427 aa31.43■■■□□ 2.62
LIME1-204ENST00000476183 PTPRUQ92729 1446 aa31.42■■■□□ 2.62
LIME1-204ENST00000476183 HSPA1LP34931 641 aa31.39■■■□□ 2.62
LIME1-204ENST00000476183 RPGRIP1LQ68CZ1 1315 aa31.39■■■□□ 2.62
LIME1-204ENST00000476183 PPLO60437 1756 aa31.38■■■□□ 2.61
LIME1-204ENST00000476183 METP08581 1390 aa31.37■■■□□ 2.61
LIME1-204ENST00000476183 SPATA31E1Q6ZUB1 1445 aa31.37■■■□□ 2.61
LIME1-204ENST00000476183 AMOTL2Q9Y2J4 779 aa31.36■■■□□ 2.61
LIME1-204ENST00000476183 VGFO15240 615 aaPredicted RBP31.35■■■□□ 2.61
LIME1-204ENST00000476183 XRN1Q8IZH2 1706 aaKnown RBP31.33■■■□□ 2.61
LIME1-204ENST00000476183 HRCP23327 699 aa31.33■■■□□ 2.61
LIME1-204ENST00000476183 RGL3Q3MIN7 710 aa31.32■■■□□ 2.6
LIME1-204ENST00000476183 MSH6P52701 1360 aa31.3■■■□□ 2.6
LIME1-204ENST00000476183 SETD1AO15047 1707 aaKnown RBP31.29■■■□□ 2.6
LIME1-204ENST00000476183 NCOA3Q9Y6Q9 1424 aa31.29■■■□□ 2.6
LIME1-204ENST00000476183 IFT172Q9UG01 1749 aa31.27■■■□□ 2.6
LIME1-204ENST00000476183 ADGRF5Q8IZF2 1346 aa31.25■■■□□ 2.59
LIME1-204ENST00000476183 FAM135BQ49AJ0 1406 aa31.24■■■□□ 2.59
LIME1-204ENST00000476183 ANKRD30BQ9BXX2 1392 aa31.24■■■□□ 2.59
LIME1-204ENST00000476183 C14orf37Q86TY3 774 aa31.22■■■□□ 2.59
LIME1-204ENST00000476183 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.21■■■□□ 2.59
LIME1-204ENST00000476183 ROBO1Q9Y6N7 1651 aa31.2■■■□□ 2.59
LIME1-204ENST00000476183 C19orf44Q9H6X5 657 aa31.19■■■□□ 2.58
LIME1-204ENST00000476183 SLAIN2Q9P270 581 aa31.19■■■□□ 2.58
LIME1-204ENST00000476183 DISP3Q9P2K9 1392 aa31.15■■■□□ 2.58
LIME1-204ENST00000476183 PIK3C2GO75747 1445 aa31.13■■■□□ 2.57
LIME1-204ENST00000476183 CADPS2Q86UW7 1296 aa31.12■■■□□ 2.57
LIME1-204ENST00000476183 ROBO2Q9HCK4 1378 aa31.12■■■□□ 2.57
LIME1-204ENST00000476183 PTCH1Q13635 1447 aa31.12■■■□□ 2.57
LIME1-204ENST00000476183 ATF3P18847 181 aa31.11■■■□□ 2.57
LIME1-204ENST00000476183 PRAG1Q86YV5 1406 aa31.11■■■□□ 2.57
LIME1-204ENST00000476183 DCCP43146 1447 aa31.08■■■□□ 2.57
LIME1-204ENST00000476183 ADGRL3Q9HAR2 1447 aa31.08■■■□□ 2.57
LIME1-204ENST00000476183 NALCNQ8IZF0 1738 aa31.08■■■□□ 2.57
LIME1-204ENST00000476183 ASXL1Q8IXJ9 1541 aa31.08■■■□□ 2.57
LIME1-204ENST00000476183 NRXN1Q9ULB1 1477 aa31.08■■■□□ 2.57
LIME1-204ENST00000476183 MYOM2P54296 1465 aa31.07■■■□□ 2.56
LIME1-204ENST00000476183 MED1Q15648 1581 aaPredicted RBP31.05■■■□□ 2.56
LIME1-204ENST00000476183 TMEM132EQ6IEE7 984 aa31.03■■■□□ 2.56
LIME1-204ENST00000476183 MST1RQ04912 1400 aa31.01■■■□□ 2.55
LIME1-204ENST00000476183 C14orf93Q9H972 538 aaKnown RBP31■■■□□ 2.55
LIME1-204ENST00000476183 LRPPRCP42704 1394 aaKnown RBP31■■■□□ 2.55
LIME1-204ENST00000476183 PHLPP1O60346 1717 aa30.99■■■□□ 2.55
LIME1-204ENST00000476183 STK26Q9P289 416 aa30.99■■■□□ 2.55
LIME1-204ENST00000476183 TECPR2O15040 1411 aa30.98■■■□□ 2.55
LIME1-204ENST00000476183 CFAP70Q5T0N1 1121 aa30.98■■■□□ 2.55
LIME1-204ENST00000476183 BRINP3Q76B58 766 aa30.97■■■□□ 2.55
LIME1-204ENST00000476183 ABCC11Q96J66 1382 aa30.96■■■□□ 2.55
LIME1-204ENST00000476183 DHX57Q6P158 1386 aaKnown RBP30.95■■■□□ 2.55
LIME1-204ENST00000476183 YTHDC2Q9H6S0 1430 aaKnown RBP30.95■■■□□ 2.54
LIME1-204ENST00000476183 KNDC1Q76NI1 1749 aa30.95■■■□□ 2.54
LIME1-204ENST00000476183 DCAF11Q8TEB1 546 aa30.94■■■□□ 2.54
LIME1-204ENST00000476183 KDM2AQ9Y2K7 1162 aa30.94■■■□□ 2.54
LIME1-204ENST00000476183 LAMC1P11047 1609 aa30.94■■■□□ 2.54
LIME1-204ENST00000476183 COL16A1Q07092 1604 aaPredicted RBP30.94■■■□□ 2.54
LIME1-204ENST00000476183 ILDR2Q71H61 639 aa30.93■■■□□ 2.54
LIME1-204ENST00000476183 AHDC1Q5TGY3 1603 aaPredicted RBP30.93■■■□□ 2.54
LIME1-204ENST00000476183 WAPLQ7Z5K2 1190 aa30.92■■■□□ 2.54
LIME1-204ENST00000476183 PLEKHH1Q9ULM0 1364 aa30.91■■■□□ 2.54
LIME1-204ENST00000476183 C1orf167Q5SNV9 1468 aa30.89■■■□□ 2.53
LIME1-204ENST00000476183 ADGRB1O14514 1584 aa30.85■■■□□ 2.53
LIME1-204ENST00000476183 CDC42BPGQ6DT37 1551 aa30.84■■■□□ 2.53
LIME1-204ENST00000476183 JCADQ9P266 1359 aa30.84■■■□□ 2.53
LIME1-204ENST00000476183 STAC3Q96MF2 364 aa30.84■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms