RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MED1Q15648 1581 aaPredicted RBP18.85■□□□□ 0.61
MSH5-SAPCD1-205ENST00000476085 NWD1Q149M9 1564 aa18.84■□□□□ 0.61
MSH5-SAPCD1-205ENST00000476085 TMEM94Q12767 1356 aa18.83■□□□□ 0.61
MSH5-SAPCD1-205ENST00000476085 PLEKHG1Q9ULL1 1385 aa18.83■□□□□ 0.61
MSH5-SAPCD1-205ENST00000476085 CHD2O14647 1828 aaKnown RBP18.82■□□□□ 0.6
MSH5-SAPCD1-205ENST00000476085 FAM135BQ49AJ0 1406 aa18.82■□□□□ 0.6
MSH5-SAPCD1-205ENST00000476085 RIMS2Q9UQ26 1411 aa18.82■□□□□ 0.6
MSH5-SAPCD1-205ENST00000476085 NKTRP30414 1462 aaKnown RBP18.8■□□□□ 0.6
MSH5-SAPCD1-205ENST00000476085 NUP155O75694 1391 aa18.8■□□□□ 0.6
MSH5-SAPCD1-205ENST00000476085 HDGFP51858 240 aaKnown RBP18.79■□□□□ 0.6
MSH5-SAPCD1-205ENST00000476085 PROSER2Q86WR7 435 aaPredicted RBP18.79■□□□□ 0.6
MSH5-SAPCD1-205ENST00000476085 PPARGC1BQ86YN6 1023 aaKnown RBP18.79■□□□□ 0.6
MSH5-SAPCD1-205ENST00000476085 TBX22Q9Y458 520 aa18.79■□□□□ 0.6
MSH5-SAPCD1-205ENST00000476085 ADAMTS13Q76LX8 1427 aa18.76■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 RRBP1Q9P2E9 1410 aaKnown RBP18.76■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.76■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 ITGAEP38570 1179 aa18.75■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 RBM33Q96EV2 1170 aaKnown RBP18.75■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 NCOA3Q9Y6Q9 1424 aa18.73■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 PIK3R4Q99570 1358 aa18.71■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 ROBO1Q9Y6N7 1651 aa18.71■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 PPP1R15AO75807 674 aaPredicted RBP18.71■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 BCANQ96GW7 911 aa18.71■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 DIP2AQ14689 1571 aa18.71■□□□□ 0.59
MSH5-SAPCD1-205ENST00000476085 CHGAP10645 457 aaKnown RBP18.7■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 SPHKAPQ2M3C7 1700 aa18.69■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 NAIPQ13075 1403 aa18.69■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 NUTM2DQ5VT03 806 aaPredicted RBP18.69■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 SENP3Q9H4L4 574 aaPredicted RBP18.69■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 MSH6P52701 1360 aa18.68■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 SLAIN2Q9P270 581 aa18.68■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 RGS17Q9UGC6 210 aaPredicted RBP18.67■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 NRXN3Q9Y4C0 1643 aa18.66■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 PTPRUQ92729 1446 aa18.66■□□□□ 0.58
MSH5-SAPCD1-205ENST00000476085 SETBP1Q9Y6X0 1596 aa18.64■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 PHF23Q9BUL5 403 aaPredicted RBP18.63■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 TRPM2O94759 1503 aa18.63■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.63■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 C19orf44Q9H6X5 657 aa18.62■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 AMOTL2Q9Y2J4 779 aa18.62■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 CLTCL1P53675 1640 aa18.61■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 HFM1A2PYH4 1435 aa18.61■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 XRN1Q8IZH2 1706 aaKnown RBP18.6■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 NEXMIFQ5QGS0 1516 aa18.59■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 PHLPP1O60346 1717 aa18.58■□□□□ 0.57
MSH5-SAPCD1-205ENST00000476085 CADPS2Q86UW7 1296 aa18.58■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 KIF1BO60333 1816 aa18.57■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 METP08581 1390 aa18.56■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 COL16A1Q07092 1604 aaPredicted RBP18.56■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 ZNF326Q5BKZ1 582 aaKnown RBP18.55■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 JCADQ9P266 1359 aa18.55■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 DCCP43146 1447 aa18.54■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 AHDC1Q5TGY3 1603 aaPredicted RBP18.53■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 ATF3P18847 181 aa18.53■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 POTEAQ6S8J7 498 aa18.52■□□□□ 0.56
MSH5-SAPCD1-205ENST00000476085 C14orf37Q86TY3 774 aa18.51■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 SETD1AO15047 1707 aaKnown RBP18.51■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 BRINP3Q76B58 766 aa18.5■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 TRIM52Q96A61 297 aa18.49■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 SLC4A1APQ9BWU0 796 aaKnown RBP18.49■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 RPGRIP1LQ68CZ1 1315 aa18.49■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 VGFO15240 615 aaPredicted RBP18.48■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 MST1RQ04912 1400 aa18.48■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 PRAG1Q86YV5 1406 aa18.47■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 SHPRHQ149N8 1683 aa18.47■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 ADGRL3Q9HAR2 1447 aa18.46■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 SPATA31A6Q5VVP1 1343 aa18.46■□□□□ 0.55
MSH5-SAPCD1-205ENST00000476085 PPLO60437 1756 aa18.45■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 LRP6O75581 1613 aa18.45■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 ASXL1Q8IXJ9 1541 aa18.44■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 NALCNQ8IZF0 1738 aa18.43■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 PTCH1Q13635 1447 aa18.43■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 NHSL1Q5SYE7 1610 aa18.43■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 SETD5Q9C0A6 1442 aa18.42■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 ROBO2Q9HCK4 1378 aa18.42■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 FOXD1Q16676 465 aa18.41■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 SPATA31E1Q6ZUB1 1445 aa18.4■□□□□ 0.54
MSH5-SAPCD1-205ENST00000476085 MPHOSPH9Q99550 1183 aa18.39■□□□□ 0.53
MSH5-SAPCD1-205ENST00000476085 LAMC1P11047 1609 aa18.38■□□□□ 0.53
MSH5-SAPCD1-205ENST00000476085 C1orf167Q5SNV9 1468 aa18.37■□□□□ 0.53
MSH5-SAPCD1-205ENST00000476085 ADGRF5Q8IZF2 1346 aa18.36■□□□□ 0.53
MSH5-SAPCD1-205ENST00000476085 LRRC59Q96AG4 307 aaKnown RBP18.36■□□□□ 0.53
MSH5-SAPCD1-205ENST00000476085 IFT172Q9UG01 1749 aa18.35■□□□□ 0.53
MSH5-SAPCD1-205ENST00000476085 CCDC144AA2RUR9 1427 aa18.35■□□□□ 0.53
MSH5-SAPCD1-205ENST00000476085 DDX17Q92841 729 aaKnown RBP18.34■□□□□ 0.53
MSH5-SAPCD1-205ENST00000476085 ZNF772Q68DY9 489 aaPredicted RBP18.33■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 ANKRD30BQ9BXX2 1392 aa18.32■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 ACIN1Q9UKV3 1341 aaKnown RBP18.32■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 TECPR2O15040 1411 aa18.32■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 PNPLA6Q8IY17 1366 aa18.31■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 SOS2Q07890 1332 aaPredicted RBP18.31■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 ORAI2Q96SN7 254 aa18.31■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 RGL3Q3MIN7 710 aa18.3■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 MEX3CQ5U5Q3 659 aaKnown RBP18.29■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 PIK3C2GO75747 1445 aa18.29■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 ABCC11Q96J66 1382 aa18.29■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 LRPPRCP42704 1394 aaKnown RBP18.28■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 NUTM2BA6NNL0 878 aaPredicted RBP18.27■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 NUTM2EB1AL46 878 aaPredicted RBP18.27■□□□□ 0.52
MSH5-SAPCD1-205ENST00000476085 NUTM2AQ8IVF1 878 aaPredicted RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms