RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 CHGAP10645 457 aaKnown RBP15.83■□□□□ 0.12
COL4A1-203ENST00000474391 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.83■□□□□ 0.12
COL4A1-203ENST00000474391 SLC26A8Q96RN1 970 aa15.83■□□□□ 0.12
COL4A1-203ENST00000474391 TRIM52Q96A61 297 aa15.82■□□□□ 0.12
COL4A1-203ENST00000474391 KCNA6P17658 529 aa15.81■□□□□ 0.12
COL4A1-203ENST00000474391 CLTCL1P53675 1640 aa15.8■□□□□ 0.12
COL4A1-203ENST00000474391 ALKQ9UM73 1620 aa15.8■□□□□ 0.12
COL4A1-203ENST00000474391 TOM1O60784 492 aa15.8■□□□□ 0.12
COL4A1-203ENST00000474391 PPP1R15AO75807 674 aaPredicted RBP15.8■□□□□ 0.12
COL4A1-203ENST00000474391 SLC4A1APQ9BWU0 796 aaKnown RBP15.8■□□□□ 0.12
COL4A1-203ENST00000474391 NWD1Q149M9 1564 aa15.79■□□□□ 0.12
COL4A1-203ENST00000474391 TBX22Q9Y458 520 aa15.79■□□□□ 0.12
COL4A1-203ENST00000474391 ADAMTS13Q76LX8 1427 aa15.78■□□□□ 0.12
COL4A1-203ENST00000474391 NKTRP30414 1462 aaKnown RBP15.78■□□□□ 0.12
COL4A1-203ENST00000474391 ACIN1Q9UKV3 1341 aaKnown RBP15.77■□□□□ 0.12
COL4A1-203ENST00000474391 DIP2AQ14689 1571 aa15.76■□□□□ 0.11
COL4A1-203ENST00000474391 XIRP1Q702N8 1843 aaKnown RBP15.76■□□□□ 0.11
COL4A1-203ENST00000474391 BCANQ96GW7 911 aa15.76■□□□□ 0.11
COL4A1-203ENST00000474391 SETD5Q9C0A6 1442 aa15.76■□□□□ 0.11
COL4A1-203ENST00000474391 NUTM2DQ5VT03 806 aaPredicted RBP15.75■□□□□ 0.11
COL4A1-203ENST00000474391 TMEM94Q12767 1356 aa15.75■□□□□ 0.11
COL4A1-203ENST00000474391 PIK3R4Q99570 1358 aa15.75■□□□□ 0.11
COL4A1-203ENST00000474391 NEXMIFQ5QGS0 1516 aa15.74■□□□□ 0.11
COL4A1-203ENST00000474391 CHD2O14647 1828 aaKnown RBP15.74■□□□□ 0.11
COL4A1-203ENST00000474391 MPHOSPH9Q99550 1183 aa15.74■□□□□ 0.11
COL4A1-203ENST00000474391 SETBP1Q9Y6X0 1596 aa15.74■□□□□ 0.11
COL4A1-203ENST00000474391 ZNF326Q5BKZ1 582 aaKnown RBP15.73■□□□□ 0.11
COL4A1-203ENST00000474391 KIF1BO60333 1816 aa15.73■□□□□ 0.11
COL4A1-203ENST00000474391 NRXN3Q9Y4C0 1643 aa15.72■□□□□ 0.11
COL4A1-203ENST00000474391 PIP4K2BP78356 416 aa15.72■□□□□ 0.11
COL4A1-203ENST00000474391 SENP3Q9H4L4 574 aaPredicted RBP15.72■□□□□ 0.11
COL4A1-203ENST00000474391 FOXD1Q16676 465 aa15.71■□□□□ 0.11
COL4A1-203ENST00000474391 PROSER2Q86WR7 435 aaPredicted RBP15.71■□□□□ 0.11
COL4A1-203ENST00000474391 RAB3GAP2Q9H2M9 1393 aa15.7■□□□□ 0.1
COL4A1-203ENST00000474391 SCAF1Q9H7N4 1312 aaKnown RBP15.69■□□□□ 0.1
COL4A1-203ENST00000474391 RPGRIP1LQ68CZ1 1315 aa15.68■□□□□ 0.1
COL4A1-203ENST00000474391 NCOA3Q9Y6Q9 1424 aa15.68■□□□□ 0.1
COL4A1-203ENST00000474391 HSPA1LP34931 641 aa15.68■□□□□ 0.1
COL4A1-203ENST00000474391 CCDC144AA2RUR9 1427 aa15.68■□□□□ 0.1
COL4A1-203ENST00000474391 PTPRUQ92729 1446 aa15.68■□□□□ 0.1
COL4A1-203ENST00000474391 RBM33Q96EV2 1170 aaKnown RBP15.67■□□□□ 0.1
COL4A1-203ENST00000474391 VGFO15240 615 aaPredicted RBP15.66■□□□□ 0.1
COL4A1-203ENST00000474391 SPATA31E1Q6ZUB1 1445 aa15.66■□□□□ 0.1
COL4A1-203ENST00000474391 METP08581 1390 aa15.65■□□□□ 0.1
COL4A1-203ENST00000474391 HRCP23327 699 aa15.65■□□□□ 0.1
COL4A1-203ENST00000474391 AMOTL2Q9Y2J4 779 aa15.65■□□□□ 0.1
COL4A1-203ENST00000474391 FAM135BQ49AJ0 1406 aa15.65■□□□□ 0.1
COL4A1-203ENST00000474391 XRN1Q8IZH2 1706 aaKnown RBP15.65■□□□□ 0.1
COL4A1-203ENST00000474391 MSH6P52701 1360 aa15.64■□□□□ 0.09
COL4A1-203ENST00000474391 PPLO60437 1756 aa15.63■□□□□ 0.09
COL4A1-203ENST00000474391 SETD1AO15047 1707 aaKnown RBP15.61■□□□□ 0.09
COL4A1-203ENST00000474391 C19orf44Q9H6X5 657 aa15.59■□□□□ 0.09
COL4A1-203ENST00000474391 SLAIN2Q9P270 581 aa15.59■□□□□ 0.09
COL4A1-203ENST00000474391 ANKRD30BQ9BXX2 1392 aa15.59■□□□□ 0.09
COL4A1-203ENST00000474391 PRAG1Q86YV5 1406 aa15.59■□□□□ 0.09
COL4A1-203ENST00000474391 IFT172Q9UG01 1749 aa15.58■□□□□ 0.08
COL4A1-203ENST00000474391 DISP3Q9P2K9 1392 aa15.58■□□□□ 0.08
COL4A1-203ENST00000474391 ROBO1Q9Y6N7 1651 aa15.57■□□□□ 0.08
COL4A1-203ENST00000474391 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.57■□□□□ 0.08
COL4A1-203ENST00000474391 RGL3Q3MIN7 710 aa15.57■□□□□ 0.08
COL4A1-203ENST00000474391 CADPS2Q86UW7 1296 aa15.57■□□□□ 0.08
COL4A1-203ENST00000474391 ADGRF5Q8IZF2 1346 aa15.57■□□□□ 0.08
COL4A1-203ENST00000474391 DCCP43146 1447 aa15.57■□□□□ 0.08
COL4A1-203ENST00000474391 C14orf37Q86TY3 774 aa15.56■□□□□ 0.08
COL4A1-203ENST00000474391 PTCH1Q13635 1447 aa15.56■□□□□ 0.08
COL4A1-203ENST00000474391 PIK3C2GO75747 1445 aa15.54■□□□□ 0.08
COL4A1-203ENST00000474391 ADGRL3Q9HAR2 1447 aa15.53■□□□□ 0.08
COL4A1-203ENST00000474391 ATF3P18847 181 aa15.53■□□□□ 0.08
COL4A1-203ENST00000474391 MED1Q15648 1581 aaPredicted RBP15.53■□□□□ 0.08
COL4A1-203ENST00000474391 NRXN1Q9ULB1 1477 aa15.52■□□□□ 0.08
COL4A1-203ENST00000474391 ROBO2Q9HCK4 1378 aa15.52■□□□□ 0.08
COL4A1-203ENST00000474391 MYOM2P54296 1465 aa15.52■□□□□ 0.07
COL4A1-203ENST00000474391 ASXL1Q8IXJ9 1541 aa15.5■□□□□ 0.07
COL4A1-203ENST00000474391 NALCNQ8IZF0 1738 aa15.5■□□□□ 0.07
COL4A1-203ENST00000474391 TECPR2O15040 1411 aa15.5■□□□□ 0.07
COL4A1-203ENST00000474391 MST1RQ04912 1400 aa15.5■□□□□ 0.07
COL4A1-203ENST00000474391 LRPPRCP42704 1394 aaKnown RBP15.48■□□□□ 0.07
COL4A1-203ENST00000474391 AHDC1Q5TGY3 1603 aaPredicted RBP15.47■□□□□ 0.07
COL4A1-203ENST00000474391 BRINP3Q76B58 766 aa15.47■□□□□ 0.07
COL4A1-203ENST00000474391 C14orf93Q9H972 538 aaKnown RBP15.47■□□□□ 0.07
COL4A1-203ENST00000474391 ABCC11Q96J66 1382 aa15.47■□□□□ 0.07
COL4A1-203ENST00000474391 COL16A1Q07092 1604 aaPredicted RBP15.46■□□□□ 0.07
COL4A1-203ENST00000474391 PHLPP1O60346 1717 aa15.46■□□□□ 0.07
COL4A1-203ENST00000474391 ILDR2Q71H61 639 aa15.46■□□□□ 0.07
COL4A1-203ENST00000474391 LAMC1P11047 1609 aa15.45■□□□□ 0.06
COL4A1-203ENST00000474391 YTHDC2Q9H6S0 1430 aaKnown RBP15.44■□□□□ 0.06
COL4A1-203ENST00000474391 KNDC1Q76NI1 1749 aa15.44■□□□□ 0.06
COL4A1-203ENST00000474391 TMEM132EQ6IEE7 984 aa15.44■□□□□ 0.06
COL4A1-203ENST00000474391 STAC3Q96MF2 364 aa15.44■□□□□ 0.06
COL4A1-203ENST00000474391 SIRT1Q96EB6 747 aa15.43■□□□□ 0.06
COL4A1-203ENST00000474391 JCADQ9P266 1359 aa15.43■□□□□ 0.06
COL4A1-203ENST00000474391 C1orf167Q5SNV9 1468 aa15.42■□□□□ 0.06
COL4A1-203ENST00000474391 DHX57Q6P158 1386 aaKnown RBP15.42■□□□□ 0.06
COL4A1-203ENST00000474391 CFAP70Q5T0N1 1121 aa15.42■□□□□ 0.06
COL4A1-203ENST00000474391 STK26Q9P289 416 aa15.42■□□□□ 0.06
COL4A1-203ENST00000474391 CDC42BPGQ6DT37 1551 aa15.41■□□□□ 0.06
COL4A1-203ENST00000474391 NHSL1Q5SYE7 1610 aa15.41■□□□□ 0.06
COL4A1-203ENST00000474391 WAPLQ7Z5K2 1190 aa15.4■□□□□ 0.06
COL4A1-203ENST00000474391 DCAF11Q8TEB1 546 aa15.4■□□□□ 0.06
COL4A1-203ENST00000474391 ADGRB1O14514 1584 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms