RNA–Protein interactions for RNA: ENST00000473421.1

TRAF4-209, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 585 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-209ENST00000473421 SLAIN2Q9P270 581 aa19.79■□□□□ 0.76
TRAF4-209ENST00000473421 NKTRP30414 1462 aaKnown RBP19.78■□□□□ 0.76
TRAF4-209ENST00000473421 SLC52A1Q9NWF4 448 aa19.77■□□□□ 0.76
TRAF4-209ENST00000473421 SETD1AO15047 1707 aaKnown RBP19.76■□□□□ 0.75
TRAF4-209ENST00000473421 NUTM2DQ5VT03 806 aaPredicted RBP19.76■□□□□ 0.75
TRAF4-209ENST00000473421 ADGRL2O95490 1459 aa19.75■□□□□ 0.75
TRAF4-209ENST00000473421 MSH6P52701 1360 aa19.75■□□□□ 0.75
TRAF4-209ENST00000473421 CHD2O14647 1828 aaKnown RBP19.75■□□□□ 0.75
TRAF4-209ENST00000473421 APLP2Q06481 763 aa19.75■□□□□ 0.75
TRAF4-209ENST00000473421 PHLPP1O60346 1717 aa19.75■□□□□ 0.75
TRAF4-209ENST00000473421 RIMS2Q9UQ26 1411 aa19.75■□□□□ 0.75
TRAF4-209ENST00000473421 GCC2Q8IWJ2 1684 aa19.74■□□□□ 0.75
TRAF4-209ENST00000473421 TMEM131LA2VDJ0 1609 aa19.73■□□□□ 0.75
TRAF4-209ENST00000473421 PLEKHG1Q9ULL1 1385 aa19.73■□□□□ 0.75
TRAF4-209ENST00000473421 FAM50AQ14320 339 aaKnown RBP19.73■□□□□ 0.75
TRAF4-209ENST00000473421 ANKRD50Q9ULJ7 1429 aa19.73■□□□□ 0.75
TRAF4-209ENST00000473421 LRP6O75581 1613 aa19.71■□□□□ 0.75
TRAF4-209ENST00000473421 COL16A1Q07092 1604 aaPredicted RBP19.71■□□□□ 0.75
TRAF4-209ENST00000473421 JCADQ9P266 1359 aa19.7■□□□□ 0.74
TRAF4-209ENST00000473421 ADAMTS13Q76LX8 1427 aa19.69■□□□□ 0.74
TRAF4-209ENST00000473421 RPRD2Q5VT52 1461 aaKnown RBP19.69■□□□□ 0.74
TRAF4-209ENST00000473421 TBX22Q9Y458 520 aa19.69■□□□□ 0.74
TRAF4-209ENST00000473421 PPP1R15AO75807 674 aaPredicted RBP19.68■□□□□ 0.74
TRAF4-209ENST00000473421 CHGAP10645 457 aaKnown RBP19.68■□□□□ 0.74
TRAF4-209ENST00000473421 PTPRUQ92729 1446 aa19.65■□□□□ 0.74
TRAF4-209ENST00000473421 E9PCH4 1651 aa19.65■□□□□ 0.74
TRAF4-209ENST00000473421 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.65■□□□□ 0.74
TRAF4-209ENST00000473421 C14orf37Q86TY3 774 aa19.63■□□□□ 0.73
TRAF4-209ENST00000473421 UNC13BO14795 1591 aa19.62■□□□□ 0.73
TRAF4-209ENST00000473421 TRIM52Q96A61 297 aa19.6■□□□□ 0.73
TRAF4-209ENST00000473421 C19orf44Q9H6X5 657 aa19.6■□□□□ 0.73
TRAF4-209ENST00000473421 NCOA3Q9Y6Q9 1424 aa19.59■□□□□ 0.73
TRAF4-209ENST00000473421 HDGFP51858 240 aaKnown RBP19.59■□□□□ 0.73
TRAF4-209ENST00000473421 BRINP3Q76B58 766 aa19.59■□□□□ 0.73
TRAF4-209ENST00000473421 AMOTL2Q9Y2J4 779 aa19.59■□□□□ 0.73
TRAF4-209ENST00000473421 AHDC1Q5TGY3 1603 aaPredicted RBP19.58■□□□□ 0.73
TRAF4-209ENST00000473421 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.58■□□□□ 0.72
TRAF4-209ENST00000473421 UPF1Q92900 1129 aaKnown RBP eCLIP19.58■□□□□ 0.72
TRAF4-209ENST00000473421 SPATA31A6Q5VVP1 1343 aa19.57■□□□□ 0.72
TRAF4-209ENST00000473421 CADPS2Q86UW7 1296 aa19.57■□□□□ 0.72
TRAF4-209ENST00000473421 ATF3P18847 181 aa19.56■□□□□ 0.72
TRAF4-209ENST00000473421 MEX3CQ5U5Q3 659 aaKnown RBP19.56■□□□□ 0.72
TRAF4-209ENST00000473421 DIP2AQ14689 1571 aa19.56■□□□□ 0.72
TRAF4-209ENST00000473421 NUTM2BA6NNL0 878 aaPredicted RBP19.55■□□□□ 0.72
TRAF4-209ENST00000473421 NUTM2EB1AL46 878 aaPredicted RBP19.55■□□□□ 0.72
TRAF4-209ENST00000473421 NUTM2AQ8IVF1 878 aaPredicted RBP19.55■□□□□ 0.72
TRAF4-209ENST00000473421 SHPRHQ149N8 1683 aa19.55■□□□□ 0.72
TRAF4-209ENST00000473421 IQGAP3Q86VI3 1631 aa19.54■□□□□ 0.72
TRAF4-209ENST00000473421 NRXN3Q9Y4C0 1643 aa19.54■□□□□ 0.72
TRAF4-209ENST00000473421 DDX17Q92841 729 aaKnown RBP19.54■□□□□ 0.72
TRAF4-209ENST00000473421 PIK3R4Q99570 1358 aa19.54■□□□□ 0.72
TRAF4-209ENST00000473421 NUP155O75694 1391 aa19.52■□□□□ 0.72
TRAF4-209ENST00000473421 TRPM2O94759 1503 aa19.51■□□□□ 0.71
TRAF4-209ENST00000473421 ITGAEP38570 1179 aa19.51■□□□□ 0.71
TRAF4-209ENST00000473421 ZNF772Q68DY9 489 aaPredicted RBP19.51■□□□□ 0.71
TRAF4-209ENST00000473421 METP08581 1390 aa19.51■□□□□ 0.71
TRAF4-209ENST00000473421 ROCK1Q13464 1354 aa19.5■□□□□ 0.71
TRAF4-209ENST00000473421 XRN1Q8IZH2 1706 aaKnown RBP19.49■□□□□ 0.71
TRAF4-209ENST00000473421 PPARGC1BQ86YN6 1023 aaKnown RBP19.49■□□□□ 0.71
TRAF4-209ENST00000473421 ASXL1Q8IXJ9 1541 aa19.49■□□□□ 0.71
TRAF4-209ENST00000473421 MST1RQ04912 1400 aa19.49■□□□□ 0.71
TRAF4-209ENST00000473421 RXRBP28702 533 aa19.48■□□□□ 0.71
TRAF4-209ENST00000473421 AFF2P51816 1311 aa19.48■□□□□ 0.71
TRAF4-209ENST00000473421 SETBP1Q9Y6X0 1596 aa19.45■□□□□ 0.7
TRAF4-209ENST00000473421 SETD5Q9C0A6 1442 aa19.45■□□□□ 0.7
TRAF4-209ENST00000473421 NHSL1Q5SYE7 1610 aa19.43■□□□□ 0.7
TRAF4-209ENST00000473421 DCCP43146 1447 aa19.43■□□□□ 0.7
TRAF4-209ENST00000473421 ZNF326Q5BKZ1 582 aaKnown RBP19.42■□□□□ 0.7
TRAF4-209ENST00000473421 SPHKAPQ2M3C7 1700 aa19.41■□□□□ 0.7
TRAF4-209ENST00000473421 PNPLA6Q8IY17 1366 aa19.41■□□□□ 0.7
TRAF4-209ENST00000473421 NALCNQ8IZF0 1738 aa19.4■□□□□ 0.7
TRAF4-209ENST00000473421 C8orf37Q96NL8 207 aa19.4■□□□□ 0.7
TRAF4-209ENST00000473421 RGS12O14924 1447 aa19.39■□□□□ 0.69
TRAF4-209ENST00000473421 CLTCL1P53675 1640 aa19.39■□□□□ 0.69
TRAF4-209ENST00000473421 NEXMIFQ5QGS0 1516 aa19.38■□□□□ 0.69
TRAF4-209ENST00000473421 LRRC59Q96AG4 307 aaKnown RBP19.38■□□□□ 0.69
TRAF4-209ENST00000473421 QTRT2Q9H974 415 aaKnown RBP19.38■□□□□ 0.69
TRAF4-209ENST00000473421 ADGRL3Q9HAR2 1447 aa19.38■□□□□ 0.69
TRAF4-209ENST00000473421 CDK12Q9NYV4 1490 aaPredicted RBP19.38■□□□□ 0.69
TRAF4-209ENST00000473421 SRCAPQ6ZRS2 3230 aa19.36■□□□□ 0.69
TRAF4-209ENST00000473421 ADAMTS2O95450 1211 aa19.36■□□□□ 0.69
TRAF4-209ENST00000473421 ORAI2Q96SN7 254 aa19.36■□□□□ 0.69
TRAF4-209ENST00000473421 C1orf167Q5SNV9 1468 aa19.35■□□□□ 0.69
TRAF4-209ENST00000473421 ROBO2Q9HCK4 1378 aa19.33■□□□□ 0.69
TRAF4-209ENST00000473421 RBM6P78332 1123 aaKnown RBP19.32■□□□□ 0.68
TRAF4-209ENST00000473421 NGLY1Q96IV0 654 aa19.3■□□□□ 0.68
TRAF4-209ENST00000473421 SOS2Q07890 1332 aaPredicted RBP19.29■□□□□ 0.68
TRAF4-209ENST00000473421 LAMC1P11047 1609 aa19.28■□□□□ 0.68
TRAF4-209ENST00000473421 NAIPQ13075 1403 aa19.25■□□□□ 0.67
TRAF4-209ENST00000473421 KIF1BO60333 1816 aa19.25■□□□□ 0.67
TRAF4-209ENST00000473421 PTCH1Q13635 1447 aa19.25■□□□□ 0.67
TRAF4-209ENST00000473421 USP21Q9UK80 565 aa19.24■□□□□ 0.67
TRAF4-209ENST00000473421 XPCQ01831 940 aaPredicted RBP19.22■□□□□ 0.67
TRAF4-209ENST00000473421 FNBP4Q8N3X1 1017 aaPredicted RBP19.22■□□□□ 0.67
TRAF4-209ENST00000473421 EP400Q96L91 3159 aa19.22■□□□□ 0.67
TRAF4-209ENST00000473421 VGFO15240 615 aaPredicted RBP19.2■□□□□ 0.66
TRAF4-209ENST00000473421 ATRNO75882 1429 aa19.19■□□□□ 0.66
TRAF4-209ENST00000473421 FOXD1Q16676 465 aa19.19■□□□□ 0.66
TRAF4-209ENST00000473421 PRAG1Q86YV5 1406 aa19.18■□□□□ 0.66
TRAF4-209ENST00000473421 MYOM2P54296 1465 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms