RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 PIP4K2BP78356 416 aa13.71□□□□□ -0.21
USF1-204ENST00000472217 RIMS2Q9UQ26 1411 aa13.71□□□□□ -0.22
USF1-204ENST00000472217 SPHKAPQ2M3C7 1700 aa13.7□□□□□ -0.22
USF1-204ENST00000472217 SLC26A8Q96RN1 970 aa13.69□□□□□ -0.22
USF1-204ENST00000472217 NWD1Q149M9 1564 aa13.69□□□□□ -0.22
USF1-204ENST00000472217 PLEKHG1Q9ULL1 1385 aa13.69□□□□□ -0.22
USF1-204ENST00000472217 HFM1A2PYH4 1435 aa13.68□□□□□ -0.22
USF1-204ENST00000472217 CHGAP10645 457 aaKnown RBP13.68□□□□□ -0.22
USF1-204ENST00000472217 DISP3Q9P2K9 1392 aa13.67□□□□□ -0.22
USF1-204ENST00000472217 PPP1R15AO75807 674 aaPredicted RBP13.66□□□□□ -0.22
USF1-204ENST00000472217 KCNA6P17658 529 aa13.65□□□□□ -0.22
USF1-204ENST00000472217 HSPA1LP34931 641 aa13.65□□□□□ -0.22
USF1-204ENST00000472217 BCANQ96GW7 911 aa13.65□□□□□ -0.22
USF1-204ENST00000472217 NKTRP30414 1462 aaKnown RBP13.65□□□□□ -0.22
USF1-204ENST00000472217 CLTCL1P53675 1640 aa13.64□□□□□ -0.23
USF1-204ENST00000472217 TMEM94Q12767 1356 aa13.64□□□□□ -0.23
USF1-204ENST00000472217 HDGFP51858 240 aaKnown RBP13.64□□□□□ -0.23
USF1-204ENST00000472217 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.64□□□□□ -0.23
USF1-204ENST00000472217 CHD2O14647 1828 aaKnown RBP13.64□□□□□ -0.23
USF1-204ENST00000472217 TRPM2O94759 1503 aa13.64□□□□□ -0.23
USF1-204ENST00000472217 DIP2AQ14689 1571 aa13.63□□□□□ -0.23
USF1-204ENST00000472217 NUTM2DQ5VT03 806 aaPredicted RBP13.63□□□□□ -0.23
USF1-204ENST00000472217 ADAMTS13Q76LX8 1427 aa13.62□□□□□ -0.23
USF1-204ENST00000472217 PROSER2Q86WR7 435 aaPredicted RBP13.61□□□□□ -0.23
USF1-204ENST00000472217 TRIM52Q96A61 297 aa13.6□□□□□ -0.23
USF1-204ENST00000472217 RBM33Q96EV2 1170 aaKnown RBP13.6□□□□□ -0.23
USF1-204ENST00000472217 TBX22Q9Y458 520 aa13.6□□□□□ -0.23
USF1-204ENST00000472217 NRXN3Q9Y4C0 1643 aa13.6□□□□□ -0.23
USF1-204ENST00000472217 SETBP1Q9Y6X0 1596 aa13.58□□□□□ -0.23
USF1-204ENST00000472217 KIF1BO60333 1816 aa13.58□□□□□ -0.24
USF1-204ENST00000472217 NEXMIFQ5QGS0 1516 aa13.58□□□□□ -0.24
USF1-204ENST00000472217 MED1Q15648 1581 aaPredicted RBP13.58□□□□□ -0.24
USF1-204ENST00000472217 ZNF326Q5BKZ1 582 aaKnown RBP13.57□□□□□ -0.24
USF1-204ENST00000472217 ILDR2Q71H61 639 aa13.57□□□□□ -0.24
USF1-204ENST00000472217 PIK3R4Q99570 1358 aa13.57□□□□□ -0.24
USF1-204ENST00000472217 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
USF1-204ENST00000472217 ROBO1Q9Y6N7 1651 aa13.56□□□□□ -0.24
USF1-204ENST00000472217 MSH6P52701 1360 aa13.56□□□□□ -0.24
USF1-204ENST00000472217 FAM135BQ49AJ0 1406 aa13.56□□□□□ -0.24
USF1-204ENST00000472217 XRN1Q8IZH2 1706 aaKnown RBP13.55□□□□□ -0.24
USF1-204ENST00000472217 PTPRUQ92729 1446 aa13.55□□□□□ -0.24
USF1-204ENST00000472217 NCOA3Q9Y6Q9 1424 aa13.53□□□□□ -0.24
USF1-204ENST00000472217 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.51□□□□□ -0.25
USF1-204ENST00000472217 FOXD1Q16676 465 aa13.51□□□□□ -0.25
USF1-204ENST00000472217 AMOTL2Q9Y2J4 779 aa13.51□□□□□ -0.25
USF1-204ENST00000472217 METP08581 1390 aa13.5□□□□□ -0.25
USF1-204ENST00000472217 PPLO60437 1756 aa13.5□□□□□ -0.25
USF1-204ENST00000472217 C14orf37Q86TY3 774 aa13.49□□□□□ -0.25
USF1-204ENST00000472217 SLAIN2Q9P270 581 aa13.49□□□□□ -0.25
USF1-204ENST00000472217 SETD1AO15047 1707 aaKnown RBP13.49□□□□□ -0.25
USF1-204ENST00000472217 CCDC144AA2RUR9 1427 aa13.47□□□□□ -0.25
USF1-204ENST00000472217 SETD5Q9C0A6 1442 aa13.47□□□□□ -0.25
USF1-204ENST00000472217 PHLPP1O60346 1717 aa13.47□□□□□ -0.25
USF1-204ENST00000472217 MPHOSPH9Q99550 1183 aa13.47□□□□□ -0.25
USF1-204ENST00000472217 C19orf44Q9H6X5 657 aa13.47□□□□□ -0.25
USF1-204ENST00000472217 RPGRIP1LQ68CZ1 1315 aa13.46□□□□□ -0.25
USF1-204ENST00000472217 VGFO15240 615 aaPredicted RBP13.46□□□□□ -0.25
USF1-204ENST00000472217 DCCP43146 1447 aa13.45□□□□□ -0.26
USF1-204ENST00000472217 SPATA31E1Q6ZUB1 1445 aa13.45□□□□□ -0.26
USF1-204ENST00000472217 NALCNQ8IZF0 1738 aa13.44□□□□□ -0.26
USF1-204ENST00000472217 IFT172Q9UG01 1749 aa13.44□□□□□ -0.26
USF1-204ENST00000472217 COL16A1Q07092 1604 aaPredicted RBP13.44□□□□□ -0.26
USF1-204ENST00000472217 ATF3P18847 181 aa13.44□□□□□ -0.26
USF1-204ENST00000472217 CADPS2Q86UW7 1296 aa13.44□□□□□ -0.26
USF1-204ENST00000472217 RAB3GAP2Q9H2M9 1393 aa13.44□□□□□ -0.26
USF1-204ENST00000472217 SOCS7O14512 581 aa13.43□□□□□ -0.26
USF1-204ENST00000472217 ADGRL3Q9HAR2 1447 aa13.43□□□□□ -0.26
USF1-204ENST00000472217 AHDC1Q5TGY3 1603 aaPredicted RBP13.42□□□□□ -0.26
USF1-204ENST00000472217 ACIN1Q9UKV3 1341 aaKnown RBP13.42□□□□□ -0.26
USF1-204ENST00000472217 PTCH1Q13635 1447 aa13.42□□□□□ -0.26
USF1-204ENST00000472217 PRAG1Q86YV5 1406 aa13.41□□□□□ -0.26
USF1-204ENST00000472217 MST1RQ04912 1400 aa13.4□□□□□ -0.26
USF1-204ENST00000472217 RGL3Q3MIN7 710 aa13.4□□□□□ -0.26
USF1-204ENST00000472217 ROBO2Q9HCK4 1378 aa13.4□□□□□ -0.26
USF1-204ENST00000472217 ADGRF5Q8IZF2 1346 aa13.39□□□□□ -0.27
USF1-204ENST00000472217 ASXL1Q8IXJ9 1541 aa13.39□□□□□ -0.27
USF1-204ENST00000472217 BRINP3Q76B58 766 aa13.39□□□□□ -0.27
USF1-204ENST00000472217 ANKRD30BQ9BXX2 1392 aa13.39□□□□□ -0.27
USF1-204ENST00000472217 JCADQ9P266 1359 aa13.39□□□□□ -0.27
USF1-204ENST00000472217 NHSL1Q5SYE7 1610 aa13.38□□□□□ -0.27
USF1-204ENST00000472217 PIK3C2GO75747 1445 aa13.37□□□□□ -0.27
USF1-204ENST00000472217 SHPRHQ149N8 1683 aa13.37□□□□□ -0.27
USF1-204ENST00000472217 RGS17Q9UGC6 210 aaPredicted RBP13.36□□□□□ -0.27
USF1-204ENST00000472217 KNDC1Q76NI1 1749 aa13.34□□□□□ -0.27
USF1-204ENST00000472217 LRP6O75581 1613 aa13.34□□□□□ -0.27
USF1-204ENST00000472217 MYOM2P54296 1465 aa13.34□□□□□ -0.27
USF1-204ENST00000472217 TECPR2O15040 1411 aa13.33□□□□□ -0.28
USF1-204ENST00000472217 C1orf167Q5SNV9 1468 aa13.33□□□□□ -0.28
USF1-204ENST00000472217 NRXN1Q9ULB1 1477 aa13.33□□□□□ -0.28
USF1-204ENST00000472217 CDC42BPGQ6DT37 1551 aa13.32□□□□□ -0.28
USF1-204ENST00000472217 LAMC1P11047 1609 aa13.32□□□□□ -0.28
USF1-204ENST00000472217 SPATA31A6Q5VVP1 1343 aa13.32□□□□□ -0.28
USF1-204ENST00000472217 LRPPRCP42704 1394 aaKnown RBP13.32□□□□□ -0.28
USF1-204ENST00000472217 TMEM132EQ6IEE7 984 aa13.31□□□□□ -0.28
USF1-204ENST00000472217 HRCP23327 699 aa13.3□□□□□ -0.28
USF1-204ENST00000472217 DDX17Q92841 729 aaKnown RBP13.3□□□□□ -0.28
USF1-204ENST00000472217 STK26Q9P289 416 aa13.3□□□□□ -0.28
USF1-204ENST00000472217 ABCC11Q96J66 1382 aa13.3□□□□□ -0.28
USF1-204ENST00000472217 YTHDC2Q9H6S0 1430 aaKnown RBP13.3□□□□□ -0.28
USF1-204ENST00000472217 POTEAQ6S8J7 498 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms