RNA–Protein interactions for RNA: ENST00000471862.1

COL4A3-205, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 5

Gene COL4A3, Length 755 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-205ENST00000471862 HFM1A2PYH4 1435 aa17.5■□□□□ 0.39
COL4A3-205ENST00000471862 PLEKHG1Q9ULL1 1385 aa17.5■□□□□ 0.39
COL4A3-205ENST00000471862 SLC26A8Q96RN1 970 aa17.48■□□□□ 0.39
COL4A3-205ENST00000471862 KCNA6P17658 529 aa17.47■□□□□ 0.39
COL4A3-205ENST00000471862 CHD2O14647 1828 aaKnown RBP17.46■□□□□ 0.39
COL4A3-205ENST00000471862 PIP4K2BP78356 416 aa17.45■□□□□ 0.38
COL4A3-205ENST00000471862 NKTRP30414 1462 aaKnown RBP17.44■□□□□ 0.38
COL4A3-205ENST00000471862 TRPM2O94759 1503 aa17.44■□□□□ 0.38
COL4A3-205ENST00000471862 CHGAP10645 457 aaKnown RBP17.44■□□□□ 0.38
COL4A3-205ENST00000471862 HDGFP51858 240 aaKnown RBP17.44■□□□□ 0.38
COL4A3-205ENST00000471862 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.44■□□□□ 0.38
COL4A3-205ENST00000471862 CLTCL1P53675 1640 aa17.43■□□□□ 0.38
COL4A3-205ENST00000471862 ADAMTS13Q76LX8 1427 aa17.43■□□□□ 0.38
COL4A3-205ENST00000471862 DIP2AQ14689 1571 aa17.43■□□□□ 0.38
COL4A3-205ENST00000471862 SCAF1Q9H7N4 1312 aaKnown RBP17.43■□□□□ 0.38
COL4A3-205ENST00000471862 TMEM94Q12767 1356 aa17.42■□□□□ 0.38
COL4A3-205ENST00000471862 HSPA1LP34931 641 aa17.42■□□□□ 0.38
COL4A3-205ENST00000471862 PPP1R15AO75807 674 aaPredicted RBP17.41■□□□□ 0.38
COL4A3-205ENST00000471862 TBX22Q9Y458 520 aa17.41■□□□□ 0.38
COL4A3-205ENST00000471862 DISP3Q9P2K9 1392 aa17.4■□□□□ 0.38
COL4A3-205ENST00000471862 NRXN3Q9Y4C0 1643 aa17.39■□□□□ 0.37
COL4A3-205ENST00000471862 KIF1BO60333 1816 aa17.38■□□□□ 0.37
COL4A3-205ENST00000471862 NUTM2DQ5VT03 806 aaPredicted RBP17.38■□□□□ 0.37
COL4A3-205ENST00000471862 BCANQ96GW7 911 aa17.38■□□□□ 0.37
COL4A3-205ENST00000471862 PROSER2Q86WR7 435 aaPredicted RBP17.37■□□□□ 0.37
COL4A3-205ENST00000471862 SENP3Q9H4L4 574 aaPredicted RBP17.37■□□□□ 0.37
COL4A3-205ENST00000471862 PIK3R4Q99570 1358 aa17.37■□□□□ 0.37
COL4A3-205ENST00000471862 NEXMIFQ5QGS0 1516 aa17.37■□□□□ 0.37
COL4A3-205ENST00000471862 SETBP1Q9Y6X0 1596 aa17.36■□□□□ 0.37
COL4A3-205ENST00000471862 TRIM52Q96A61 297 aa17.36■□□□□ 0.37
COL4A3-205ENST00000471862 FAM135BQ49AJ0 1406 aa17.34■□□□□ 0.37
COL4A3-205ENST00000471862 RBM33Q96EV2 1170 aaKnown RBP17.34■□□□□ 0.37
COL4A3-205ENST00000471862 PTPRUQ92729 1446 aa17.33■□□□□ 0.36
COL4A3-205ENST00000471862 NCOA3Q9Y6Q9 1424 aa17.33■□□□□ 0.36
COL4A3-205ENST00000471862 SLC4A1APQ9BWU0 796 aaKnown RBP17.33■□□□□ 0.36
COL4A3-205ENST00000471862 MED1Q15648 1581 aaPredicted RBP17.32■□□□□ 0.36
COL4A3-205ENST00000471862 XRN1Q8IZH2 1706 aaKnown RBP17.31■□□□□ 0.36
COL4A3-205ENST00000471862 ILDR2Q71H61 639 aa17.31■□□□□ 0.36
COL4A3-205ENST00000471862 MSH6P52701 1360 aa17.3■□□□□ 0.36
COL4A3-205ENST00000471862 ROBO1Q9Y6N7 1651 aa17.3■□□□□ 0.36
COL4A3-205ENST00000471862 ZNF326Q5BKZ1 582 aaKnown RBP17.3■□□□□ 0.36
COL4A3-205ENST00000471862 SETD1AO15047 1707 aaKnown RBP17.27■□□□□ 0.36
COL4A3-205ENST00000471862 PPLO60437 1756 aa17.27■□□□□ 0.35
COL4A3-205ENST00000471862 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.27■□□□□ 0.35
COL4A3-205ENST00000471862 AMOTL2Q9Y2J4 779 aa17.26■□□□□ 0.35
COL4A3-205ENST00000471862 METP08581 1390 aa17.26■□□□□ 0.35
COL4A3-205ENST00000471862 FOXD1Q16676 465 aa17.25■□□□□ 0.35
COL4A3-205ENST00000471862 SETD5Q9C0A6 1442 aa17.24■□□□□ 0.35
COL4A3-205ENST00000471862 MPHOSPH9Q99550 1183 aa17.24■□□□□ 0.35
COL4A3-205ENST00000471862 RPGRIP1LQ68CZ1 1315 aa17.23■□□□□ 0.35
COL4A3-205ENST00000471862 SLAIN2Q9P270 581 aa17.23■□□□□ 0.35
COL4A3-205ENST00000471862 ACIN1Q9UKV3 1341 aaKnown RBP17.21■□□□□ 0.35
COL4A3-205ENST00000471862 IFT172Q9UG01 1749 aa17.21■□□□□ 0.35
COL4A3-205ENST00000471862 C19orf44Q9H6X5 657 aa17.21■□□□□ 0.35
COL4A3-205ENST00000471862 CCDC144AA2RUR9 1427 aa17.21■□□□□ 0.34
COL4A3-205ENST00000471862 DCCP43146 1447 aa17.21■□□□□ 0.34
COL4A3-205ENST00000471862 SPATA31E1Q6ZUB1 1445 aa17.21■□□□□ 0.34
COL4A3-205ENST00000471862 VGFO15240 615 aaPredicted RBP17.2■□□□□ 0.34
COL4A3-205ENST00000471862 PRAG1Q86YV5 1406 aa17.2■□□□□ 0.34
COL4A3-205ENST00000471862 PHLPP1O60346 1717 aa17.19■□□□□ 0.34
COL4A3-205ENST00000471862 CADPS2Q86UW7 1296 aa17.19■□□□□ 0.34
COL4A3-205ENST00000471862 RAB3GAP2Q9H2M9 1393 aa17.18■□□□□ 0.34
COL4A3-205ENST00000471862 COL16A1Q07092 1604 aaPredicted RBP17.18■□□□□ 0.34
COL4A3-205ENST00000471862 PTCH1Q13635 1447 aa17.17■□□□□ 0.34
COL4A3-205ENST00000471862 C14orf37Q86TY3 774 aa17.17■□□□□ 0.34
COL4A3-205ENST00000471862 NALCNQ8IZF0 1738 aa17.17■□□□□ 0.34
COL4A3-205ENST00000471862 AHDC1Q5TGY3 1603 aaPredicted RBP17.16■□□□□ 0.34
COL4A3-205ENST00000471862 ADGRL3Q9HAR2 1447 aa17.15■□□□□ 0.34
COL4A3-205ENST00000471862 SOCS7O14512 581 aa17.15■□□□□ 0.34
COL4A3-205ENST00000471862 ATF3P18847 181 aa17.15■□□□□ 0.34
COL4A3-205ENST00000471862 MST1RQ04912 1400 aa17.13■□□□□ 0.33
COL4A3-205ENST00000471862 ADGRF5Q8IZF2 1346 aa17.13■□□□□ 0.33
COL4A3-205ENST00000471862 ANKRD30BQ9BXX2 1392 aa17.13■□□□□ 0.33
COL4A3-205ENST00000471862 ROBO2Q9HCK4 1378 aa17.12■□□□□ 0.33
COL4A3-205ENST00000471862 BRINP3Q76B58 766 aa17.11■□□□□ 0.33
COL4A3-205ENST00000471862 ASXL1Q8IXJ9 1541 aa17.11■□□□□ 0.33
COL4A3-205ENST00000471862 RGL3Q3MIN7 710 aa17.1■□□□□ 0.33
COL4A3-205ENST00000471862 PHF23Q9BUL5 403 aaPredicted RBP17.1■□□□□ 0.33
COL4A3-205ENST00000471862 JCADQ9P266 1359 aa17.1■□□□□ 0.33
COL4A3-205ENST00000471862 PIK3C2GO75747 1445 aa17.1■□□□□ 0.33
COL4A3-205ENST00000471862 NHSL1Q5SYE7 1610 aa17.1■□□□□ 0.33
COL4A3-205ENST00000471862 SHPRHQ149N8 1683 aa17.08■□□□□ 0.32
COL4A3-205ENST00000471862 HRCP23327 699 aa17.08■□□□□ 0.32
COL4A3-205ENST00000471862 RGS17Q9UGC6 210 aaPredicted RBP17.08■□□□□ 0.32
COL4A3-205ENST00000471862 KNDC1Q76NI1 1749 aa17.07■□□□□ 0.32
COL4A3-205ENST00000471862 NRXN1Q9ULB1 1477 aa17.07■□□□□ 0.32
COL4A3-205ENST00000471862 TECPR2O15040 1411 aa17.07■□□□□ 0.32
COL4A3-205ENST00000471862 MYOM2P54296 1465 aa17.06■□□□□ 0.32
COL4A3-205ENST00000471862 C1orf167Q5SNV9 1468 aa17.05■□□□□ 0.32
COL4A3-205ENST00000471862 LRPPRCP42704 1394 aaKnown RBP17.04■□□□□ 0.32
COL4A3-205ENST00000471862 LAMC1P11047 1609 aa17.04■□□□□ 0.32
COL4A3-205ENST00000471862 CDC42BPGQ6DT37 1551 aa17.03■□□□□ 0.32
COL4A3-205ENST00000471862 LRP6O75581 1613 aa17.03■□□□□ 0.32
COL4A3-205ENST00000471862 ABCC11Q96J66 1382 aa17.02■□□□□ 0.32
COL4A3-205ENST00000471862 SPATA31A6Q5VVP1 1343 aa17.01■□□□□ 0.31
COL4A3-205ENST00000471862 YTHDC2Q9H6S0 1430 aaKnown RBP17■□□□□ 0.31
COL4A3-205ENST00000471862 C14orf93Q9H972 538 aaKnown RBP17■□□□□ 0.31
COL4A3-205ENST00000471862 TMEM132EQ6IEE7 984 aa16.99■□□□□ 0.31
COL4A3-205ENST00000471862 POTEAQ6S8J7 498 aa16.97■□□□□ 0.31
COL4A3-205ENST00000471862 WAPLQ7Z5K2 1190 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms