RNA–Protein interactions for RNA: ENST00000468164.1

C9orf3-212, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-212ENST00000468164 ALKQ9UM73 1620 aa20.43■□□□□ 0.86
C9orf3-212ENST00000468164 SPHKAPQ2M3C7 1700 aa20.43■□□□□ 0.86
C9orf3-212ENST00000468164 PPP1R15AO75807 674 aaPredicted RBP20.42■□□□□ 0.86
C9orf3-212ENST00000468164 HSPA1LP34931 641 aa20.42■□□□□ 0.86
C9orf3-212ENST00000468164 RRBP1Q9P2E9 1410 aaKnown RBP20.39■□□□□ 0.85
C9orf3-212ENST00000468164 RIMS2Q9UQ26 1411 aa20.39■□□□□ 0.85
C9orf3-212ENST00000468164 CHD2O14647 1828 aaKnown RBP20.38■□□□□ 0.85
C9orf3-212ENST00000468164 NUTM2DQ5VT03 806 aaPredicted RBP20.37■□□□□ 0.85
C9orf3-212ENST00000468164 RBM33Q96EV2 1170 aaKnown RBP20.36■□□□□ 0.85
C9orf3-212ENST00000468164 ZFYVE9O95405 1425 aa20.36■□□□□ 0.85
C9orf3-212ENST00000468164 HDGFP51858 240 aaKnown RBP20.34■□□□□ 0.85
C9orf3-212ENST00000468164 ILDR2Q71H61 639 aa20.34■□□□□ 0.85
C9orf3-212ENST00000468164 KIF1BO60333 1816 aa20.34■□□□□ 0.85
C9orf3-212ENST00000468164 KCNA6P17658 529 aa20.33■□□□□ 0.85
C9orf3-212ENST00000468164 PROSER2Q86WR7 435 aaPredicted RBP20.33■□□□□ 0.85
C9orf3-212ENST00000468164 NWD1Q149M9 1564 aa20.33■□□□□ 0.84
C9orf3-212ENST00000468164 TMEM94Q12767 1356 aa20.32■□□□□ 0.84
C9orf3-212ENST00000468164 PLEKHG1Q9ULL1 1385 aa20.32■□□□□ 0.84
C9orf3-212ENST00000468164 NAIPQ13075 1403 aa20.31■□□□□ 0.84
C9orf3-212ENST00000468164 MED1Q15648 1581 aaPredicted RBP20.29■□□□□ 0.84
C9orf3-212ENST00000468164 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.29■□□□□ 0.84
C9orf3-212ENST00000468164 CLTCL1P53675 1640 aa20.28■□□□□ 0.84
C9orf3-212ENST00000468164 TRIM52Q96A61 297 aa20.28■□□□□ 0.84
C9orf3-212ENST00000468164 NKTRP30414 1462 aaKnown RBP20.28■□□□□ 0.84
C9orf3-212ENST00000468164 ZNF326Q5BKZ1 582 aaKnown RBP20.27■□□□□ 0.84
C9orf3-212ENST00000468164 ROBO1Q9Y6N7 1651 aa20.26■□□□□ 0.83
C9orf3-212ENST00000468164 DIP2AQ14689 1571 aa20.24■□□□□ 0.83
C9orf3-212ENST00000468164 TRPM2O94759 1503 aa20.22■□□□□ 0.83
C9orf3-212ENST00000468164 MSH6P52701 1360 aa20.22■□□□□ 0.83
C9orf3-212ENST00000468164 HFM1A2PYH4 1435 aa20.22■□□□□ 0.83
C9orf3-212ENST00000468164 ADAMTS13Q76LX8 1427 aa20.22■□□□□ 0.83
C9orf3-212ENST00000468164 C14orf37Q86TY3 774 aa20.22■□□□□ 0.83
C9orf3-212ENST00000468164 TBX22Q9Y458 520 aa20.22■□□□□ 0.83
C9orf3-212ENST00000468164 NRXN3Q9Y4C0 1643 aa20.2■□□□□ 0.82
C9orf3-212ENST00000468164 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.19■□□□□ 0.82
C9orf3-212ENST00000468164 PHF23Q9BUL5 403 aaPredicted RBP20.18■□□□□ 0.82
C9orf3-212ENST00000468164 PHLPP1O60346 1717 aa20.18■□□□□ 0.82
C9orf3-212ENST00000468164 SLC4A1APQ9BWU0 796 aaKnown RBP20.17■□□□□ 0.82
C9orf3-212ENST00000468164 FAM135BQ49AJ0 1406 aa20.16■□□□□ 0.82
C9orf3-212ENST00000468164 NEXMIFQ5QGS0 1516 aa20.16■□□□□ 0.82
C9orf3-212ENST00000468164 SOCS7O14512 581 aa20.15■□□□□ 0.82
C9orf3-212ENST00000468164 SETBP1Q9Y6X0 1596 aa20.15■□□□□ 0.82
C9orf3-212ENST00000468164 AMOTL2Q9Y2J4 779 aa20.14■□□□□ 0.81
C9orf3-212ENST00000468164 XRN1Q8IZH2 1706 aaKnown RBP20.13■□□□□ 0.81
C9orf3-212ENST00000468164 PIK3R4Q99570 1358 aa20.13■□□□□ 0.81
C9orf3-212ENST00000468164 PPLO60437 1756 aa20.13■□□□□ 0.81
C9orf3-212ENST00000468164 PTPRUQ92729 1446 aa20.12■□□□□ 0.81
C9orf3-212ENST00000468164 SLAIN2Q9P270 581 aa20.12■□□□□ 0.81
C9orf3-212ENST00000468164 FOXD1Q16676 465 aa20.11■□□□□ 0.81
C9orf3-212ENST00000468164 ATF3P18847 181 aa20.08■□□□□ 0.81
C9orf3-212ENST00000468164 METP08581 1390 aa20.08■□□□□ 0.8
C9orf3-212ENST00000468164 NCOA3Q9Y6Q9 1424 aa20.07■□□□□ 0.8
C9orf3-212ENST00000468164 SETD1AO15047 1707 aaKnown RBP20.07■□□□□ 0.8
C9orf3-212ENST00000468164 C19orf44Q9H6X5 657 aa20.06■□□□□ 0.8
C9orf3-212ENST00000468164 NALCNQ8IZF0 1738 aa20.05■□□□□ 0.8
C9orf3-212ENST00000468164 CADPS2Q86UW7 1296 aa20.05■□□□□ 0.8
C9orf3-212ENST00000468164 COL16A1Q07092 1604 aaPredicted RBP20.03■□□□□ 0.8
C9orf3-212ENST00000468164 VGFO15240 615 aaPredicted RBP20.02■□□□□ 0.8
C9orf3-212ENST00000468164 IFT172Q9UG01 1749 aa20.02■□□□□ 0.79
C9orf3-212ENST00000468164 MPHOSPH9Q99550 1183 aa20.01■□□□□ 0.79
C9orf3-212ENST00000468164 CCDC144AA2RUR9 1427 aa20.01■□□□□ 0.79
C9orf3-212ENST00000468164 RGL3Q3MIN7 710 aa20■□□□□ 0.79
C9orf3-212ENST00000468164 RPGRIP1LQ68CZ1 1315 aa19.98■□□□□ 0.79
C9orf3-212ENST00000468164 SETD5Q9C0A6 1442 aa19.97■□□□□ 0.79
C9orf3-212ENST00000468164 AHDC1Q5TGY3 1603 aaPredicted RBP19.97■□□□□ 0.79
C9orf3-212ENST00000468164 JCADQ9P266 1359 aa19.96■□□□□ 0.79
C9orf3-212ENST00000468164 DCCP43146 1447 aa19.95■□□□□ 0.78
C9orf3-212ENST00000468164 ADGRL3Q9HAR2 1447 aa19.95■□□□□ 0.78
C9orf3-212ENST00000468164 SHPRHQ149N8 1683 aa19.95■□□□□ 0.78
C9orf3-212ENST00000468164 NHSL1Q5SYE7 1610 aa19.94■□□□□ 0.78
C9orf3-212ENST00000468164 ASXL1Q8IXJ9 1541 aa19.94■□□□□ 0.78
C9orf3-212ENST00000468164 BRINP3Q76B58 766 aa19.94■□□□□ 0.78
C9orf3-212ENST00000468164 RGS17Q9UGC6 210 aaPredicted RBP19.94■□□□□ 0.78
C9orf3-212ENST00000468164 MST1RQ04912 1400 aa19.93■□□□□ 0.78
C9orf3-212ENST00000468164 RAB3GAP2Q9H2M9 1393 aa19.91■□□□□ 0.78
C9orf3-212ENST00000468164 ADGRF5Q8IZF2 1346 aa19.9■□□□□ 0.78
C9orf3-212ENST00000468164 ROBO2Q9HCK4 1378 aa19.9■□□□□ 0.78
C9orf3-212ENST00000468164 PTCH1Q13635 1447 aa19.9■□□□□ 0.78
C9orf3-212ENST00000468164 SPATA31E1Q6ZUB1 1445 aa19.9■□□□□ 0.78
C9orf3-212ENST00000468164 MEX3CQ5U5Q3 659 aaKnown RBP19.89■□□□□ 0.77
C9orf3-212ENST00000468164 DDX17Q92841 729 aaKnown RBP19.87■□□□□ 0.77
C9orf3-212ENST00000468164 STK26Q9P289 416 aa19.87■□□□□ 0.77
C9orf3-212ENST00000468164 LRP6O75581 1613 aa19.87■□□□□ 0.77
C9orf3-212ENST00000468164 ANKRD30BQ9BXX2 1392 aa19.86■□□□□ 0.77
C9orf3-212ENST00000468164 ACIN1Q9UKV3 1341 aaKnown RBP19.86■□□□□ 0.77
C9orf3-212ENST00000468164 NUTM2BA6NNL0 878 aaPredicted RBP19.86■□□□□ 0.77
C9orf3-212ENST00000468164 NUTM2EB1AL46 878 aaPredicted RBP19.86■□□□□ 0.77
C9orf3-212ENST00000468164 POTEAQ6S8J7 498 aa19.86■□□□□ 0.77
C9orf3-212ENST00000468164 NUTM2AQ8IVF1 878 aaPredicted RBP19.86■□□□□ 0.77
C9orf3-212ENST00000468164 KNDC1Q76NI1 1749 aa19.85■□□□□ 0.77
C9orf3-212ENST00000468164 SPATA31A6Q5VVP1 1343 aa19.85■□□□□ 0.77
C9orf3-212ENST00000468164 C1orf167Q5SNV9 1468 aa19.84■□□□□ 0.77
C9orf3-212ENST00000468164 TMEM132EQ6IEE7 984 aa19.83■□□□□ 0.77
C9orf3-212ENST00000468164 PIK3C2GO75747 1445 aa19.81■□□□□ 0.76
C9orf3-212ENST00000468164 LAMC1P11047 1609 aa19.8■□□□□ 0.76
C9orf3-212ENST00000468164 PRAG1Q86YV5 1406 aa19.8■□□□□ 0.76
C9orf3-212ENST00000468164 ORAI2Q96SN7 254 aa19.8■□□□□ 0.76
C9orf3-212ENST00000468164 RGPD8O14715 1765 aaPredicted RBP19.8■□□□□ 0.76
C9orf3-212ENST00000468164 CDC42BPGQ6DT37 1551 aa19.79■□□□□ 0.76
C9orf3-212ENST00000468164 WAPLQ7Z5K2 1190 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms