RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 ZNF142P52746 1687 aaPredicted RBP9.87□□□□□ -0.83
SCAF4-204ENST00000467731 KDM2AQ9Y2K7 1162 aa9.85□□□□□ -0.83
SCAF4-204ENST00000467731 NEXMIFQ5QGS0 1516 aa9.85□□□□□ -0.83
SCAF4-204ENST00000467731 PPP1R15AO75807 674 aaPredicted RBP9.84□□□□□ -0.83
SCAF4-204ENST00000467731 BCL11AQ9H165 835 aa9.84□□□□□ -0.83
SCAF4-204ENST00000467731 UHRF1BP1Q6BDS2 1440 aa9.84□□□□□ -0.83
SCAF4-204ENST00000467731 NUTM2DQ5VT03 806 aaPredicted RBP9.83□□□□□ -0.84
SCAF4-204ENST00000467731 RPGRIP1LQ68CZ1 1315 aa9.82□□□□□ -0.84
SCAF4-204ENST00000467731 MYOM2P54296 1465 aa9.82□□□□□ -0.84
SCAF4-204ENST00000467731 ZFYVE9O95405 1425 aa9.82□□□□□ -0.84
SCAF4-204ENST00000467731 RIMS2Q9UQ26 1411 aa9.82□□□□□ -0.84
SCAF4-204ENST00000467731 TMEM2Q9UHN6 1383 aa9.82□□□□□ -0.84
SCAF4-204ENST00000467731 NBPF8Q3BBV2 869 aa9.81□□□□□ -0.84
SCAF4-204ENST00000467731 THEMISQ8N1K5 641 aaPredicted RBP9.81□□□□□ -0.84
SCAF4-204ENST00000467731 PRAG1Q86YV5 1406 aa9.81□□□□□ -0.84
SCAF4-204ENST00000467731 SLIT1O75093 1534 aa9.81□□□□□ -0.84
SCAF4-204ENST00000467731 ADGRF5Q8IZF2 1346 aa9.81□□□□□ -0.84
SCAF4-204ENST00000467731 STAC3Q96MF2 364 aa9.8□□□□□ -0.84
SCAF4-204ENST00000467731 ARHGAP23Q9P227 1491 aa9.8□□□□□ -0.84
SCAF4-204ENST00000467731 NRXN1Q9ULB1 1477 aa9.8□□□□□ -0.84
SCAF4-204ENST00000467731 VGFO15240 615 aaPredicted RBP9.8□□□□□ -0.84
SCAF4-204ENST00000467731 TRPM1Q7Z4N2 1603 aa9.79□□□□□ -0.84
SCAF4-204ENST00000467731 PIK3C2GO75747 1445 aa9.79□□□□□ -0.84
SCAF4-204ENST00000467731 SENP3Q9H4L4 574 aaPredicted RBP9.79□□□□□ -0.84
SCAF4-204ENST00000467731 SCAF1Q9H7N4 1312 aaKnown RBP9.79□□□□□ -0.84
SCAF4-204ENST00000467731 LTKP29376 864 aa9.78□□□□□ -0.84
SCAF4-204ENST00000467731 LMTK3Q96Q04 1460 aa9.78□□□□□ -0.84
SCAF4-204ENST00000467731 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.78□□□□□ -0.84
SCAF4-204ENST00000467731 HDGFP51858 240 aaKnown RBP9.78□□□□□ -0.84
SCAF4-204ENST00000467731 TXNDC2Q86VQ3 553 aa9.77□□□□□ -0.85
SCAF4-204ENST00000467731 EID1Q9Y6B2 187 aa9.77□□□□□ -0.85
SCAF4-204ENST00000467731 POLR1AO95602 1720 aaPredicted RBP9.77□□□□□ -0.85
SCAF4-204ENST00000467731 KIAA1210Q9ULL0 1709 aa9.77□□□□□ -0.85
SCAF4-204ENST00000467731 RALGAPBQ86X10 1494 aa9.77□□□□□ -0.85
SCAF4-204ENST00000467731 SCAF11Q99590 1463 aaKnown RBP9.77□□□□□ -0.85
SCAF4-204ENST00000467731 NRXN3Q9Y4C0 1643 aa9.77□□□□□ -0.85
SCAF4-204ENST00000467731 IQGAP1P46940 1657 aa9.76□□□□□ -0.85
SCAF4-204ENST00000467731 HSPA2P54652 639 aa9.76□□□□□ -0.85
SCAF4-204ENST00000467731 CFAP70Q5T0N1 1121 aa9.75□□□□□ -0.85
SCAF4-204ENST00000467731 ROCK2O75116 1388 aaKnown RBP9.75□□□□□ -0.85
SCAF4-204ENST00000467731 LAMC1P11047 1609 aa9.75□□□□□ -0.85
SCAF4-204ENST00000467731 NBPF1Q3BBV0 1214 aa9.75□□□□□ -0.85
SCAF4-204ENST00000467731 ANKLE2Q86XL3 938 aa9.75□□□□□ -0.85
SCAF4-204ENST00000467731 SETBP1Q9Y6X0 1596 aa9.75□□□□□ -0.85
SCAF4-204ENST00000467731 SETD1AO15047 1707 aaKnown RBP9.75□□□□□ -0.85
SCAF4-204ENST00000467731 PLEKHG1Q9ULL1 1385 aa9.74□□□□□ -0.85
SCAF4-204ENST00000467731 ALKQ9UM73 1620 aa9.74□□□□□ -0.85
SCAF4-204ENST00000467731 BCANQ96GW7 911 aa9.74□□□□□ -0.85
SCAF4-204ENST00000467731 C14orf93Q9H972 538 aaKnown RBP9.74□□□□□ -0.85
SCAF4-204ENST00000467731 ADGRB1O14514 1584 aa9.72□□□□□ -0.85
SCAF4-204ENST00000467731 CARD11Q9BXL7 1154 aa9.72□□□□□ -0.85
SCAF4-204ENST00000467731 ASXL1Q8IXJ9 1541 aa9.72□□□□□ -0.85
SCAF4-204ENST00000467731 ADAMTS13Q76LX8 1427 aa9.72□□□□□ -0.85
SCAF4-204ENST00000467731 GPRASP1Q5JY77 1395 aa9.72□□□□□ -0.85
SCAF4-204ENST00000467731 NCKAP5LQ9HCH0 1330 aa9.72□□□□□ -0.85
SCAF4-204ENST00000467731 STRCQ7RTU9 1775 aa9.72□□□□□ -0.85
SCAF4-204ENST00000467731 TMEM132EQ6IEE7 984 aa9.72□□□□□ -0.85
SCAF4-204ENST00000467731 MED14O60244 1454 aa9.71□□□□□ -0.85
SCAF4-204ENST00000467731 SLC26A8Q96RN1 970 aa9.71□□□□□ -0.85
SCAF4-204ENST00000467731 NPHP4O75161 1426 aaPredicted RBP9.71□□□□□ -0.86
SCAF4-204ENST00000467731 DIP2AQ14689 1571 aa9.7□□□□□ -0.86
SCAF4-204ENST00000467731 METP08581 1390 aa9.7□□□□□ -0.86
SCAF4-204ENST00000467731 USP47Q96K76 1375 aa9.69□□□□□ -0.86
SCAF4-204ENST00000467731 HIRIP3Q9BW71 556 aaPredicted RBP9.68□□□□□ -0.86
SCAF4-204ENST00000467731 YTHDC2Q9H6S0 1430 aaKnown RBP9.68□□□□□ -0.86
SCAF4-204ENST00000467731 ARHGEF28Q8N1W1 1705 aaKnown RBP9.68□□□□□ -0.86
SCAF4-204ENST00000467731 EIF4G2P78344 907 aaKnown RBP eCLIP9.68□□□□□ -0.86
SCAF4-204ENST00000467731 TBX22Q9Y458 520 aa9.68□□□□□ -0.86
SCAF4-204ENST00000467731 AEBP2Q6ZN18 517 aaPredicted RBP9.67□□□□□ -0.86
SCAF4-204ENST00000467731 TRAK1Q9UPV9 953 aa9.67□□□□□ -0.86
SCAF4-204ENST00000467731 HSPA5P11021 654 aaKnown RBP9.67□□□□□ -0.86
SCAF4-204ENST00000467731 STK26Q9P289 416 aa9.67□□□□□ -0.86
SCAF4-204ENST00000467731 CHD2O14647 1828 aaKnown RBP9.67□□□□□ -0.86
SCAF4-204ENST00000467731 KNDC1Q76NI1 1749 aa9.66□□□□□ -0.86
SCAF4-204ENST00000467731 PTPRUQ92729 1446 aa9.66□□□□□ -0.86
SCAF4-204ENST00000467731 ST20-MTHFSA0A0A6YYL1 179 aa9.66□□□□□ -0.86
SCAF4-204ENST00000467731 LRPPRCP42704 1394 aaKnown RBP9.65□□□□□ -0.86
SCAF4-204ENST00000467731 EIF3AQ14152 1382 aaKnown RBP9.65□□□□□ -0.86
SCAF4-204ENST00000467731 XRN1Q8IZH2 1706 aaKnown RBP9.65□□□□□ -0.87
SCAF4-204ENST00000467731 DAXXQ9UER7 740 aaPredicted RBP9.64□□□□□ -0.87
SCAF4-204ENST00000467731 ABCC11Q96J66 1382 aa9.64□□□□□ -0.87
SCAF4-204ENST00000467731 PIK3R4Q99570 1358 aa9.64□□□□□ -0.87
SCAF4-204ENST00000467731 QRICH2Q9H0J4 1663 aa9.64□□□□□ -0.87
SCAF4-204ENST00000467731 TECPR2O15040 1411 aa9.64□□□□□ -0.87
SCAF4-204ENST00000467731 CPS1P31327 1500 aa9.64□□□□□ -0.87
SCAF4-204ENST00000467731 AMOTL2Q9Y2J4 779 aa9.63□□□□□ -0.87
SCAF4-204ENST00000467731 DLC1Q96QB1 1528 aa9.63□□□□□ -0.87
SCAF4-204ENST00000467731 STRCP1A6NGW2 1772 aa9.62□□□□□ -0.87
SCAF4-204ENST00000467731 SAFB2Q14151 953 aaKnown RBP eCLIP9.62□□□□□ -0.87
SCAF4-204ENST00000467731 PRAM1Q96QH2 718 aa9.62□□□□□ -0.87
SCAF4-204ENST00000467731 CENPJQ9HC77 1338 aaPredicted RBP9.62□□□□□ -0.87
SCAF4-204ENST00000467731 ROBO2Q9HCK4 1378 aa9.62□□□□□ -0.87
SCAF4-204ENST00000467731 KCNA6P17658 529 aa9.62□□□□□ -0.87
SCAF4-204ENST00000467731 NWD1Q149M9 1564 aa9.62□□□□□ -0.87
SCAF4-204ENST00000467731 PTCH1Q13635 1447 aa9.61□□□□□ -0.87
SCAF4-204ENST00000467731 PLEKHH1Q9ULM0 1364 aa9.61□□□□□ -0.87
SCAF4-204ENST00000467731 WAPLQ7Z5K2 1190 aa9.61□□□□□ -0.87
SCAF4-204ENST00000467731 TESK2Q96S53 571 aa9.61□□□□□ -0.87
SCAF4-204ENST00000467731 ZNF316A6NFI3 1004 aaPredicted RBP9.61□□□□□ -0.87
SCAF4-204ENST00000467731 DMRT2Q9Y5R5 561 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms