RNA–Protein interactions for RNA: ENST00000465209.1

COL11A1-207, Transcript of collagen type XI alpha 1 chain, humanhuman

TSL 2

Gene COL11A1, Length 297 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1-207ENST00000465209 E9PCH4 1651 aa17.1■□□□□ 0.33
COL11A1-207ENST00000465209 SENP3Q9H4L4 574 aaPredicted RBP17.1■□□□□ 0.33
COL11A1-207ENST00000465209 RGS17Q9UGC6 210 aaPredicted RBP17.1■□□□□ 0.33
COL11A1-207ENST00000465209 STAG3Q9UJ98 1225 aa17.1■□□□□ 0.33
COL11A1-207ENST00000465209 SLC26A8Q96RN1 970 aa17.09■□□□□ 0.33
COL11A1-207ENST00000465209 PHF23Q9BUL5 403 aaPredicted RBP17.09■□□□□ 0.33
COL11A1-207ENST00000465209 SLC52A1Q9NWF4 448 aa17.09■□□□□ 0.33
COL11A1-207ENST00000465209 IQGAP3Q86VI3 1631 aa17.07■□□□□ 0.32
COL11A1-207ENST00000465209 PLEKHG1Q9ULL1 1385 aa17.07■□□□□ 0.32
COL11A1-207ENST00000465209 RIMS2Q9UQ26 1411 aa17.05■□□□□ 0.32
COL11A1-207ENST00000465209 RBM33Q96EV2 1170 aaKnown RBP17.04■□□□□ 0.32
COL11A1-207ENST00000465209 FAM50AQ14320 339 aaKnown RBP17.03■□□□□ 0.32
COL11A1-207ENST00000465209 ADAMTS13Q76LX8 1427 aa17.03■□□□□ 0.32
COL11A1-207ENST00000465209 ROCK1Q13464 1354 aa17.02■□□□□ 0.32
COL11A1-207ENST00000465209 DIP2AQ14689 1571 aa17.02■□□□□ 0.32
COL11A1-207ENST00000465209 PHLPP1O60346 1717 aa17.02■□□□□ 0.32
COL11A1-207ENST00000465209 PROSER2Q86WR7 435 aaPredicted RBP17.02■□□□□ 0.32
COL11A1-207ENST00000465209 COL16A1Q07092 1604 aaPredicted RBP17.01■□□□□ 0.31
COL11A1-207ENST00000465209 MSH6P52701 1360 aa17■□□□□ 0.31
COL11A1-207ENST00000465209 NCOA3Q9Y6Q9 1424 aa16.98■□□□□ 0.31
COL11A1-207ENST00000465209 NRXN3Q9Y4C0 1643 aa16.98■□□□□ 0.31
COL11A1-207ENST00000465209 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.98■□□□□ 0.31
COL11A1-207ENST00000465209 TBX22Q9Y458 520 aa16.96■□□□□ 0.31
COL11A1-207ENST00000465209 POTEAQ6S8J7 498 aa16.95■□□□□ 0.3
COL11A1-207ENST00000465209 SPHKAPQ2M3C7 1700 aa16.95■□□□□ 0.3
COL11A1-207ENST00000465209 XRN1Q8IZH2 1706 aaKnown RBP16.95■□□□□ 0.3
COL11A1-207ENST00000465209 AHDC1Q5TGY3 1603 aaPredicted RBP16.95■□□□□ 0.3
COL11A1-207ENST00000465209 PIK3R4Q99570 1358 aa16.94■□□□□ 0.3
COL11A1-207ENST00000465209 SLAIN2Q9P270 581 aa16.94■□□□□ 0.3
COL11A1-207ENST00000465209 PTPRUQ92729 1446 aa16.94■□□□□ 0.3
COL11A1-207ENST00000465209 SETD1AO15047 1707 aaKnown RBP16.93■□□□□ 0.3
COL11A1-207ENST00000465209 TRPM2O94759 1503 aa16.93■□□□□ 0.3
COL11A1-207ENST00000465209 SETBP1Q9Y6X0 1596 aa16.93■□□□□ 0.3
COL11A1-207ENST00000465209 LRP6O75581 1613 aa16.92■□□□□ 0.3
COL11A1-207ENST00000465209 SHPRHQ149N8 1683 aa16.92■□□□□ 0.3
COL11A1-207ENST00000465209 PPP1R15AO75807 674 aaPredicted RBP16.92■□□□□ 0.3
COL11A1-207ENST00000465209 JCADQ9P266 1359 aa16.91■□□□□ 0.3
COL11A1-207ENST00000465209 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.91■□□□□ 0.3
COL11A1-207ENST00000465209 BCANQ96GW7 911 aa16.91■□□□□ 0.3
COL11A1-207ENST00000465209 HDGFP51858 240 aaKnown RBP16.9■□□□□ 0.3
COL11A1-207ENST00000465209 NUP155O75694 1391 aa16.89■□□□□ 0.3
COL11A1-207ENST00000465209 NUTM2DQ5VT03 806 aaPredicted RBP16.89■□□□□ 0.29
COL11A1-207ENST00000465209 CHGAP10645 457 aaKnown RBP16.87■□□□□ 0.29
COL11A1-207ENST00000465209 CLTCL1P53675 1640 aa16.87■□□□□ 0.29
COL11A1-207ENST00000465209 DCCP43146 1447 aa16.87■□□□□ 0.29
COL11A1-207ENST00000465209 NEXMIFQ5QGS0 1516 aa16.86■□□□□ 0.29
COL11A1-207ENST00000465209 NHSL1Q5SYE7 1610 aa16.85■□□□□ 0.29
COL11A1-207ENST00000465209 CADPS2Q86UW7 1296 aa16.84■□□□□ 0.29
COL11A1-207ENST00000465209 C19orf44Q9H6X5 657 aa16.84■□□□□ 0.29
COL11A1-207ENST00000465209 ASXL1Q8IXJ9 1541 aa16.83■□□□□ 0.28
COL11A1-207ENST00000465209 NALCNQ8IZF0 1738 aa16.83■□□□□ 0.28
COL11A1-207ENST00000465209 MST1RQ04912 1400 aa16.82■□□□□ 0.28
COL11A1-207ENST00000465209 SPATA31A6Q5VVP1 1343 aa16.82■□□□□ 0.28
COL11A1-207ENST00000465209 AMOTL2Q9Y2J4 779 aa16.82■□□□□ 0.28
COL11A1-207ENST00000465209 METP08581 1390 aa16.81■□□□□ 0.28
COL11A1-207ENST00000465209 BRINP3Q76B58 766 aa16.81■□□□□ 0.28
COL11A1-207ENST00000465209 RRBP1Q9P2E9 1410 aaKnown RBP16.8■□□□□ 0.28
COL11A1-207ENST00000465209 KIF1BO60333 1816 aa16.8■□□□□ 0.28
COL11A1-207ENST00000465209 ATF3P18847 181 aa16.79■□□□□ 0.28
COL11A1-207ENST00000465209 ITGAEP38570 1179 aa16.79■□□□□ 0.28
COL11A1-207ENST00000465209 SETD5Q9C0A6 1442 aa16.79■□□□□ 0.28
COL11A1-207ENST00000465209 C14orf37Q86TY3 774 aa16.78■□□□□ 0.28
COL11A1-207ENST00000465209 NAIPQ13075 1403 aa16.78■□□□□ 0.28
COL11A1-207ENST00000465209 ADGRL3Q9HAR2 1447 aa16.78■□□□□ 0.28
COL11A1-207ENST00000465209 LAMC1P11047 1609 aa16.78■□□□□ 0.28
COL11A1-207ENST00000465209 PRAG1Q86YV5 1406 aa16.75■□□□□ 0.27
COL11A1-207ENST00000465209 PPARGC1BQ86YN6 1023 aaKnown RBP16.74■□□□□ 0.27
COL11A1-207ENST00000465209 PTCH1Q13635 1447 aa16.73■□□□□ 0.27
COL11A1-207ENST00000465209 PPLO60437 1756 aa16.72■□□□□ 0.27
COL11A1-207ENST00000465209 ZNF326Q5BKZ1 582 aaKnown RBP16.71■□□□□ 0.27
COL11A1-207ENST00000465209 ZNF772Q68DY9 489 aaPredicted RBP16.71■□□□□ 0.27
COL11A1-207ENST00000465209 CDK12Q9NYV4 1490 aaPredicted RBP16.71■□□□□ 0.27
COL11A1-207ENST00000465209 HFM1A2PYH4 1435 aa16.7■□□□□ 0.26
COL11A1-207ENST00000465209 C1orf167Q5SNV9 1468 aa16.69■□□□□ 0.26
COL11A1-207ENST00000465209 PNPLA6Q8IY17 1366 aa16.69■□□□□ 0.26
COL11A1-207ENST00000465209 MEX3CQ5U5Q3 659 aaKnown RBP16.69■□□□□ 0.26
COL11A1-207ENST00000465209 ROBO2Q9HCK4 1378 aa16.67■□□□□ 0.26
COL11A1-207ENST00000465209 DDX17Q92841 729 aaKnown RBP16.67■□□□□ 0.26
COL11A1-207ENST00000465209 UPF1Q92900 1129 aaKnown RBP eCLIP16.66■□□□□ 0.26
COL11A1-207ENST00000465209 AFF2P51816 1311 aa16.65■□□□□ 0.26
COL11A1-207ENST00000465209 IFT172Q9UG01 1749 aa16.65■□□□□ 0.26
COL11A1-207ENST00000465209 COL22A1Q8NFW1 1626 aaPredicted RBP16.64■□□□□ 0.25
COL11A1-207ENST00000465209 TRIM52Q96A61 297 aa16.64■□□□□ 0.25
COL11A1-207ENST00000465209 RGS12O14924 1447 aa16.63■□□□□ 0.25
COL11A1-207ENST00000465209 NUTM2BA6NNL0 878 aaPredicted RBP16.63■□□□□ 0.25
COL11A1-207ENST00000465209 NUTM2EB1AL46 878 aaPredicted RBP16.63■□□□□ 0.25
COL11A1-207ENST00000465209 NUTM2AQ8IVF1 878 aaPredicted RBP16.63■□□□□ 0.25
COL11A1-207ENST00000465209 LRRC59Q96AG4 307 aaKnown RBP16.63■□□□□ 0.25
COL11A1-207ENST00000465209 CDC42BPGQ6DT37 1551 aa16.63■□□□□ 0.25
COL11A1-207ENST00000465209 RXRBP28702 533 aa16.62■□□□□ 0.25
COL11A1-207ENST00000465209 SOS2Q07890 1332 aaPredicted RBP16.61■□□□□ 0.25
COL11A1-207ENST00000465209 EP400Q96L91 3159 aa16.61■□□□□ 0.25
COL11A1-207ENST00000465209 RPGRIP1LQ68CZ1 1315 aa16.6■□□□□ 0.25
COL11A1-207ENST00000465209 KNDC1Q76NI1 1749 aa16.59■□□□□ 0.25
COL11A1-207ENST00000465209 VGFO15240 615 aaPredicted RBP16.59■□□□□ 0.25
COL11A1-207ENST00000465209 SRCAPQ6ZRS2 3230 aa16.59■□□□□ 0.25
COL11A1-207ENST00000465209 ORAI2Q96SN7 254 aa16.58■□□□□ 0.24
COL11A1-207ENST00000465209 TECPR2O15040 1411 aa16.58■□□□□ 0.24
COL11A1-207ENST00000465209 MARF1Q9Y4F3 1742 aaKnown RBP16.57■□□□□ 0.24
COL11A1-207ENST00000465209 MYOM2P54296 1465 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms