RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 ZFYVE9O95405 1425 aa34.92■■■■□ 3.18
USP4-208ENST00000464168 NKTRP30414 1462 aaKnown RBP34.88■■■■□ 3.17
USP4-208ENST00000464168 PLEKHG1Q9ULL1 1385 aa34.87■■■■□ 3.17
USP4-208ENST00000464168 RIMS2Q9UQ26 1411 aa34.87■■■■□ 3.17
USP4-208ENST00000464168 NWD1Q149M9 1564 aa34.87■■■■□ 3.17
USP4-208ENST00000464168 HDGFP51858 240 aaKnown RBP34.86■■■■□ 3.17
USP4-208ENST00000464168 RGS17Q9UGC6 210 aaPredicted RBP34.85■■■■□ 3.17
USP4-208ENST00000464168 ROCK1Q13464 1354 aa34.85■■■■□ 3.17
USP4-208ENST00000464168 UNC13BO14795 1591 aa34.84■■■■□ 3.17
USP4-208ENST00000464168 PPP1R15AO75807 674 aaPredicted RBP34.84■■■■□ 3.17
USP4-208ENST00000464168 TMEM131LA2VDJ0 1609 aa34.84■■■■□ 3.17
USP4-208ENST00000464168 MYO5BQ9ULV0 1848 aa34.81■■■■□ 3.16
USP4-208ENST00000464168 GCC2Q8IWJ2 1684 aa34.8■■■■□ 3.16
USP4-208ENST00000464168 CHGAP10645 457 aaKnown RBP34.8■■■■□ 3.16
USP4-208ENST00000464168 TBX22Q9Y458 520 aa34.8■■■■□ 3.16
USP4-208ENST00000464168 MSH6P52701 1360 aa34.79■■■■□ 3.16
USP4-208ENST00000464168 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.78■■■■□ 3.16
USP4-208ENST00000464168 ROBO1Q9Y6N7 1651 aa34.78■■■■□ 3.16
USP4-208ENST00000464168 SLAIN2Q9P270 581 aa34.77■■■■□ 3.16
USP4-208ENST00000464168 E9PCH4 1651 aa34.75■■■■□ 3.15
USP4-208ENST00000464168 NUTM2DQ5VT03 806 aaPredicted RBP34.74■■■■□ 3.15
USP4-208ENST00000464168 CHD2O14647 1828 aaKnown RBP34.73■■■■□ 3.15
USP4-208ENST00000464168 NUP155O75694 1391 aa34.73■■■■□ 3.15
USP4-208ENST00000464168 IQGAP3Q86VI3 1631 aa34.71■■■■□ 3.15
USP4-208ENST00000464168 ITGAEP38570 1179 aa34.71■■■■□ 3.15
USP4-208ENST00000464168 ADAMTS13Q76LX8 1427 aa34.7■■■■□ 3.15
USP4-208ENST00000464168 NCOA3Q9Y6Q9 1424 aa34.66■■■■□ 3.14
USP4-208ENST00000464168 PPARGC1BQ86YN6 1023 aaKnown RBP34.66■■■■□ 3.14
USP4-208ENST00000464168 POTEAQ6S8J7 498 aa34.63■■■■□ 3.13
USP4-208ENST00000464168 PIK3R4Q99570 1358 aa34.62■■■■□ 3.13
USP4-208ENST00000464168 C14orf37Q86TY3 774 aa34.6■■■■□ 3.13
USP4-208ENST00000464168 DIP2AQ14689 1571 aa34.59■■■■□ 3.13
USP4-208ENST00000464168 C19orf44Q9H6X5 657 aa34.57■■■■□ 3.12
USP4-208ENST00000464168 JCADQ9P266 1359 aa34.56■■■■□ 3.12
USP4-208ENST00000464168 PHLPP1O60346 1717 aa34.55■■■■□ 3.12
USP4-208ENST00000464168 AMOTL2Q9Y2J4 779 aa34.55■■■■□ 3.12
USP4-208ENST00000464168 CADPS2Q86UW7 1296 aa34.54■■■■□ 3.12
USP4-208ENST00000464168 PTPRUQ92729 1446 aa34.53■■■■□ 3.12
USP4-208ENST00000464168 ATF3P18847 181 aa34.51■■■■□ 3.12
USP4-208ENST00000464168 TRPM2O94759 1503 aa34.5■■■■□ 3.11
USP4-208ENST00000464168 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.48■■■■□ 3.11
USP4-208ENST00000464168 COL16A1Q07092 1604 aaPredicted RBP34.48■■■■□ 3.11
USP4-208ENST00000464168 ZNF326Q5BKZ1 582 aaKnown RBP34.44■■■■□ 3.1
USP4-208ENST00000464168 SPHKAPQ2M3C7 1700 aa34.41■■■■□ 3.1
USP4-208ENST00000464168 SETBP1Q9Y6X0 1596 aa34.41■■■■□ 3.1
USP4-208ENST00000464168 NRXN3Q9Y4C0 1643 aa34.41■■■■□ 3.1
USP4-208ENST00000464168 SPATA31A6Q5VVP1 1343 aa34.39■■■■□ 3.1
USP4-208ENST00000464168 BRINP3Q76B58 766 aa34.39■■■■□ 3.1
USP4-208ENST00000464168 AHDC1Q5TGY3 1603 aaPredicted RBP34.39■■■■□ 3.1
USP4-208ENST00000464168 METP08581 1390 aa34.38■■■■□ 3.09
USP4-208ENST00000464168 LRP6O75581 1613 aa34.36■■■■□ 3.09
USP4-208ENST00000464168 RRBP1Q9P2E9 1410 aaKnown RBP34.36■■■■□ 3.09
USP4-208ENST00000464168 DCCP43146 1447 aa34.35■■■■□ 3.09
USP4-208ENST00000464168 XRN1Q8IZH2 1706 aaKnown RBP34.35■■■■□ 3.09
USP4-208ENST00000464168 NAIPQ13075 1403 aa34.33■■■■□ 3.09
USP4-208ENST00000464168 CLTCL1P53675 1640 aa34.31■■■■□ 3.08
USP4-208ENST00000464168 MEX3CQ5U5Q3 659 aaKnown RBP34.3■■■■□ 3.08
USP4-208ENST00000464168 NEXMIFQ5QGS0 1516 aa34.29■■■■□ 3.08
USP4-208ENST00000464168 MST1RQ04912 1400 aa34.28■■■■□ 3.08
USP4-208ENST00000464168 SHPRHQ149N8 1683 aa34.26■■■■□ 3.08
USP4-208ENST00000464168 ASXL1Q8IXJ9 1541 aa34.25■■■■□ 3.07
USP4-208ENST00000464168 ZNF772Q68DY9 489 aaPredicted RBP34.24■■■■□ 3.07
USP4-208ENST00000464168 ADGRL3Q9HAR2 1447 aa34.21■■■■□ 3.07
USP4-208ENST00000464168 NUTM2BA6NNL0 878 aaPredicted RBP34.2■■■■□ 3.07
USP4-208ENST00000464168 NUTM2EB1AL46 878 aaPredicted RBP34.2■■■■□ 3.07
USP4-208ENST00000464168 NUTM2AQ8IVF1 878 aaPredicted RBP34.2■■■■□ 3.07
USP4-208ENST00000464168 TRIM52Q96A61 297 aa34.2■■■■□ 3.07
USP4-208ENST00000464168 SETD5Q9C0A6 1442 aa34.2■■■■□ 3.06
USP4-208ENST00000464168 SETD1AO15047 1707 aaKnown RBP34.18■■■■□ 3.06
USP4-208ENST00000464168 VGFO15240 615 aaPredicted RBP34.17■■■■□ 3.06
USP4-208ENST00000464168 HFM1A2PYH4 1435 aa34.16■■■■□ 3.06
USP4-208ENST00000464168 DDX17Q92841 729 aaKnown RBP34.16■■■■□ 3.06
USP4-208ENST00000464168 KIF1BO60333 1816 aa34.16■■■■□ 3.06
USP4-208ENST00000464168 LRRC59Q96AG4 307 aaKnown RBP34.15■■■■□ 3.06
USP4-208ENST00000464168 SLC4A1APQ9BWU0 796 aaKnown RBP34.13■■■■□ 3.05
USP4-208ENST00000464168 NHSL1Q5SYE7 1610 aa34.12■■■■□ 3.05
USP4-208ENST00000464168 RPGRIP1LQ68CZ1 1315 aa34.11■■■■□ 3.05
USP4-208ENST00000464168 NALCNQ8IZF0 1738 aa34.1■■■■□ 3.05
USP4-208ENST00000464168 ROBO2Q9HCK4 1378 aa34.09■■■■□ 3.05
USP4-208ENST00000464168 PTCH1Q13635 1447 aa34.08■■■■□ 3.05
USP4-208ENST00000464168 RXRBP28702 533 aa34.08■■■■□ 3.05
USP4-208ENST00000464168 C1orf167Q5SNV9 1468 aa34.07■■■■□ 3.05
USP4-208ENST00000464168 AFF2P51816 1311 aa34.06■■■■□ 3.04
USP4-208ENST00000464168 PNPLA6Q8IY17 1366 aa34.05■■■■□ 3.04
USP4-208ENST00000464168 UPF1Q92900 1129 aaKnown RBP eCLIP34.03■■■■□ 3.04
USP4-208ENST00000464168 PRAG1Q86YV5 1406 aa34.02■■■■□ 3.04
USP4-208ENST00000464168 ORAI2Q96SN7 254 aa34.01■■■■□ 3.03
USP4-208ENST00000464168 FOXD1Q16676 465 aa34■■■■□ 3.03
USP4-208ENST00000464168 C8orf37Q96NL8 207 aa33.98■■■■□ 3.03
USP4-208ENST00000464168 CDK12Q9NYV4 1490 aaPredicted RBP33.96■■■■□ 3.03
USP4-208ENST00000464168 SOS2Q07890 1332 aaPredicted RBP33.95■■■■□ 3.03
USP4-208ENST00000464168 PPLO60437 1756 aa33.94■■■■□ 3.02
USP4-208ENST00000464168 LAMC1P11047 1609 aa33.93■■■■□ 3.02
USP4-208ENST00000464168 QTRT2Q9H974 415 aaKnown RBP33.93■■■■□ 3.02
USP4-208ENST00000464168 ADGRF5Q8IZF2 1346 aa33.91■■■■□ 3.02
USP4-208ENST00000464168 ADAMTS2O95450 1211 aa33.9■■■■□ 3.02
USP4-208ENST00000464168 RBM6P78332 1123 aaKnown RBP33.88■■■■□ 3.01
USP4-208ENST00000464168 RGL3Q3MIN7 710 aa33.88■■■■□ 3.01
USP4-208ENST00000464168 NGLY1Q96IV0 654 aa33.88■■■■□ 3.01
USP4-208ENST00000464168 CCDC144AA2RUR9 1427 aa33.87■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms