RNA–Protein interactions for RNA: ENST00000463172.5

HDAC1-203, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 895 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-203ENST00000463172 RIMS2Q9UQ26 1411 aa19.62■□□□□ 0.73
HDAC1-203ENST00000463172 ACIN1Q9UKV3 1341 aaKnown RBP19.62■□□□□ 0.73
HDAC1-203ENST00000463172 STRCP1A6NGW2 1772 aa19.6■□□□□ 0.73
HDAC1-203ENST00000463172 ZFYVE9O95405 1425 aa19.59■□□□□ 0.73
HDAC1-203ENST00000463172 PLEKHG1Q9ULL1 1385 aa19.59■□□□□ 0.73
HDAC1-203ENST00000463172 LRRC7Q96NW7 1537 aa19.58■□□□□ 0.73
HDAC1-203ENST00000463172 SCAF1Q9H7N4 1312 aaKnown RBP19.57■□□□□ 0.72
HDAC1-203ENST00000463172 SLC26A8Q96RN1 970 aa19.57■□□□□ 0.72
HDAC1-203ENST00000463172 SLC4A1APQ9BWU0 796 aaKnown RBP19.57■□□□□ 0.72
HDAC1-203ENST00000463172 KCNA6P17658 529 aa19.56■□□□□ 0.72
HDAC1-203ENST00000463172 TRPM2O94759 1503 aa19.56■□□□□ 0.72
HDAC1-203ENST00000463172 KIF1BO60333 1816 aa19.55■□□□□ 0.72
HDAC1-203ENST00000463172 ZNF326Q5BKZ1 582 aaKnown RBP19.55■□□□□ 0.72
HDAC1-203ENST00000463172 PIP4K2BP78356 416 aa19.53■□□□□ 0.72
HDAC1-203ENST00000463172 DIP2AQ14689 1571 aa19.53■□□□□ 0.72
HDAC1-203ENST00000463172 TBX22Q9Y458 520 aa19.51■□□□□ 0.71
HDAC1-203ENST00000463172 NKTRP30414 1462 aaKnown RBP19.51■□□□□ 0.71
HDAC1-203ENST00000463172 PROSER2Q86WR7 435 aaPredicted RBP19.5■□□□□ 0.71
HDAC1-203ENST00000463172 CLTCL1P53675 1640 aa19.5■□□□□ 0.71
HDAC1-203ENST00000463172 NWD1Q149M9 1564 aa19.49■□□□□ 0.71
HDAC1-203ENST00000463172 CHD2O14647 1828 aaKnown RBP19.49■□□□□ 0.71
HDAC1-203ENST00000463172 NUTM2DQ5VT03 806 aaPredicted RBP19.49■□□□□ 0.71
HDAC1-203ENST00000463172 PIK3R4Q99570 1358 aa19.48■□□□□ 0.71
HDAC1-203ENST00000463172 SENP3Q9H4L4 574 aaPredicted RBP19.47■□□□□ 0.71
HDAC1-203ENST00000463172 SETD5Q9C0A6 1442 aa19.47■□□□□ 0.71
HDAC1-203ENST00000463172 XIRP1Q702N8 1843 aaKnown RBP19.46■□□□□ 0.71
HDAC1-203ENST00000463172 TMEM94Q12767 1356 aa19.46■□□□□ 0.71
HDAC1-203ENST00000463172 MPHOSPH9Q99550 1183 aa19.44■□□□□ 0.7
HDAC1-203ENST00000463172 ADAMTS13Q76LX8 1427 aa19.43■□□□□ 0.7
HDAC1-203ENST00000463172 RPGRIP1LQ68CZ1 1315 aa19.43■□□□□ 0.7
HDAC1-203ENST00000463172 MSH6P52701 1360 aa19.43■□□□□ 0.7
HDAC1-203ENST00000463172 CCDC144AA2RUR9 1427 aa19.42■□□□□ 0.7
HDAC1-203ENST00000463172 SETBP1Q9Y6X0 1596 aa19.41■□□□□ 0.7
HDAC1-203ENST00000463172 VGFO15240 615 aaPredicted RBP19.41■□□□□ 0.7
HDAC1-203ENST00000463172 NCOA3Q9Y6Q9 1424 aa19.41■□□□□ 0.7
HDAC1-203ENST00000463172 NEXMIFQ5QGS0 1516 aa19.41■□□□□ 0.7
HDAC1-203ENST00000463172 HSPA1LP34931 641 aa19.4■□□□□ 0.7
HDAC1-203ENST00000463172 ALKQ9UM73 1620 aa19.4■□□□□ 0.7
HDAC1-203ENST00000463172 C14orf37Q86TY3 774 aa19.39■□□□□ 0.69
HDAC1-203ENST00000463172 DISP3Q9P2K9 1392 aa19.37■□□□□ 0.69
HDAC1-203ENST00000463172 RAB3GAP2Q9H2M9 1393 aa19.36■□□□□ 0.69
HDAC1-203ENST00000463172 FOXD1Q16676 465 aa19.36■□□□□ 0.69
HDAC1-203ENST00000463172 AMOTL2Q9Y2J4 779 aa19.36■□□□□ 0.69
HDAC1-203ENST00000463172 NRXN3Q9Y4C0 1643 aa19.36■□□□□ 0.69
HDAC1-203ENST00000463172 RBM33Q96EV2 1170 aaKnown RBP19.35■□□□□ 0.69
HDAC1-203ENST00000463172 PPLO60437 1756 aa19.34■□□□□ 0.69
HDAC1-203ENST00000463172 FAM135BQ49AJ0 1406 aa19.34■□□□□ 0.69
HDAC1-203ENST00000463172 ATF3P18847 181 aa19.31■□□□□ 0.68
HDAC1-203ENST00000463172 HRCP23327 699 aa19.31■□□□□ 0.68
HDAC1-203ENST00000463172 CADPS2Q86UW7 1296 aa19.31■□□□□ 0.68
HDAC1-203ENST00000463172 C19orf44Q9H6X5 657 aa19.31■□□□□ 0.68
HDAC1-203ENST00000463172 XRN1Q8IZH2 1706 aaKnown RBP19.31■□□□□ 0.68
HDAC1-203ENST00000463172 SLAIN2Q9P270 581 aa19.3■□□□□ 0.68
HDAC1-203ENST00000463172 ANKRD30BQ9BXX2 1392 aa19.3■□□□□ 0.68
HDAC1-203ENST00000463172 PTPRUQ92729 1446 aa19.29■□□□□ 0.68
HDAC1-203ENST00000463172 ROBO1Q9Y6N7 1651 aa19.29■□□□□ 0.68
HDAC1-203ENST00000463172 METP08581 1390 aa19.29■□□□□ 0.68
HDAC1-203ENST00000463172 RGL3Q3MIN7 710 aa19.28■□□□□ 0.68
HDAC1-203ENST00000463172 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.27■□□□□ 0.68
HDAC1-203ENST00000463172 SPATA31E1Q6ZUB1 1445 aa19.26■□□□□ 0.67
HDAC1-203ENST00000463172 DCCP43146 1447 aa19.25■□□□□ 0.67
HDAC1-203ENST00000463172 IFT172Q9UG01 1749 aa19.25■□□□□ 0.67
HDAC1-203ENST00000463172 SETD1AO15047 1707 aaKnown RBP19.23■□□□□ 0.67
HDAC1-203ENST00000463172 PTCH1Q13635 1447 aa19.22■□□□□ 0.67
HDAC1-203ENST00000463172 MED1Q15648 1581 aaPredicted RBP19.22■□□□□ 0.67
HDAC1-203ENST00000463172 PHLPP1O60346 1717 aa19.2■□□□□ 0.66
HDAC1-203ENST00000463172 PHF23Q9BUL5 403 aaPredicted RBP19.2■□□□□ 0.66
HDAC1-203ENST00000463172 ADGRF5Q8IZF2 1346 aa19.2■□□□□ 0.66
HDAC1-203ENST00000463172 ADGRL3Q9HAR2 1447 aa19.19■□□□□ 0.66
HDAC1-203ENST00000463172 PRAG1Q86YV5 1406 aa19.18■□□□□ 0.66
HDAC1-203ENST00000463172 LAMC1P11047 1609 aa19.16■□□□□ 0.66
HDAC1-203ENST00000463172 PIK3C2GO75747 1445 aa19.16■□□□□ 0.66
HDAC1-203ENST00000463172 MYOM2P54296 1465 aa19.16■□□□□ 0.66
HDAC1-203ENST00000463172 NALCNQ8IZF0 1738 aa19.15■□□□□ 0.66
HDAC1-203ENST00000463172 STAC3Q96MF2 364 aa19.14■□□□□ 0.65
HDAC1-203ENST00000463172 ROBO2Q9HCK4 1378 aa19.13■□□□□ 0.65
HDAC1-203ENST00000463172 JCADQ9P266 1359 aa19.13■□□□□ 0.65
HDAC1-203ENST00000463172 AHDC1Q5TGY3 1603 aaPredicted RBP19.12■□□□□ 0.65
HDAC1-203ENST00000463172 MST1RQ04912 1400 aa19.12■□□□□ 0.65
HDAC1-203ENST00000463172 LRPPRCP42704 1394 aaKnown RBP19.12■□□□□ 0.65
HDAC1-203ENST00000463172 KNDC1Q76NI1 1749 aa19.11■□□□□ 0.65
HDAC1-203ENST00000463172 BRINP3Q76B58 766 aa19.11■□□□□ 0.65
HDAC1-203ENST00000463172 STK26Q9P289 416 aa19.11■□□□□ 0.65
HDAC1-203ENST00000463172 C14orf93Q9H972 538 aaKnown RBP19.1■□□□□ 0.65
HDAC1-203ENST00000463172 ASXL1Q8IXJ9 1541 aa19.1■□□□□ 0.65
HDAC1-203ENST00000463172 NRXN1Q9ULB1 1477 aa19.09■□□□□ 0.65
HDAC1-203ENST00000463172 TECPR2O15040 1411 aa19.09■□□□□ 0.65
HDAC1-203ENST00000463172 DHX57Q6P158 1386 aaKnown RBP19.09■□□□□ 0.65
HDAC1-203ENST00000463172 ABCC11Q96J66 1382 aa19.09■□□□□ 0.65
HDAC1-203ENST00000463172 COL16A1Q07092 1604 aaPredicted RBP19.09■□□□□ 0.65
HDAC1-203ENST00000463172 YTHDC2Q9H6S0 1430 aaKnown RBP19.08■□□□□ 0.64
HDAC1-203ENST00000463172 TMEM132EQ6IEE7 984 aa19.07■□□□□ 0.64
HDAC1-203ENST00000463172 ILDR2Q71H61 639 aa19.07■□□□□ 0.64
HDAC1-203ENST00000463172 DCAF11Q8TEB1 546 aa19.06■□□□□ 0.64
HDAC1-203ENST00000463172 SIRT1Q96EB6 747 aa19.06■□□□□ 0.64
HDAC1-203ENST00000463172 CDC42BPGQ6DT37 1551 aa19.06■□□□□ 0.64
HDAC1-203ENST00000463172 SPATA31A6Q5VVP1 1343 aa19.05■□□□□ 0.64
HDAC1-203ENST00000463172 C1orf167Q5SNV9 1468 aa19.05■□□□□ 0.64
HDAC1-203ENST00000463172 CFAP70Q5T0N1 1121 aa19.05■□□□□ 0.64
HDAC1-203ENST00000463172 KDM2AQ9Y2K7 1162 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms