RNA–Protein interactions for RNA: ENST00000463020.1

SND1-203, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 793 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-203ENST00000463020 NKTRP30414 1462 aaKnown RBP24.58■■□□□ 1.52
SND1-203ENST00000463020 APLP2Q06481 763 aa24.55■■□□□ 1.52
SND1-203ENST00000463020 GCC2Q8IWJ2 1684 aa24.53■■□□□ 1.52
SND1-203ENST00000463020 SLC52A1Q9NWF4 448 aa24.52■■□□□ 1.52
SND1-203ENST00000463020 TMEM131LA2VDJ0 1609 aa24.52■■□□□ 1.52
SND1-203ENST00000463020 ANKRD50Q9ULJ7 1429 aa24.52■■□□□ 1.52
SND1-203ENST00000463020 PLEKHG1Q9ULL1 1385 aa24.51■■□□□ 1.51
SND1-203ENST00000463020 RIMS2Q9UQ26 1411 aa24.51■■□□□ 1.51
SND1-203ENST00000463020 FAM50AQ14320 339 aaKnown RBP24.5■■□□□ 1.51
SND1-203ENST00000463020 BCANQ96GW7 911 aa24.5■■□□□ 1.51
SND1-203ENST00000463020 RPRD2Q5VT52 1461 aaKnown RBP24.5■■□□□ 1.51
SND1-203ENST00000463020 CHD2O14647 1828 aaKnown RBP24.49■■□□□ 1.51
SND1-203ENST00000463020 SETD1AO15047 1707 aaKnown RBP24.49■■□□□ 1.51
SND1-203ENST00000463020 PHLPP1O60346 1717 aa24.49■■□□□ 1.51
SND1-203ENST00000463020 MSH6P52701 1360 aa24.48■■□□□ 1.51
SND1-203ENST00000463020 SLAIN2Q9P270 581 aa24.48■■□□□ 1.51
SND1-203ENST00000463020 NUTM2DQ5VT03 806 aaPredicted RBP24.47■■□□□ 1.51
SND1-203ENST00000463020 COL16A1Q07092 1604 aaPredicted RBP24.46■■□□□ 1.51
SND1-203ENST00000463020 UNC13BO14795 1591 aa24.45■■□□□ 1.5
SND1-203ENST00000463020 ADAMTS13Q76LX8 1427 aa24.44■■□□□ 1.5
SND1-203ENST00000463020 LRP6O75581 1613 aa24.44■■□□□ 1.5
SND1-203ENST00000463020 E9PCH4 1651 aa24.43■■□□□ 1.5
SND1-203ENST00000463020 PPP1R15AO75807 674 aaPredicted RBP24.42■■□□□ 1.5
SND1-203ENST00000463020 JCADQ9P266 1359 aa24.41■■□□□ 1.5
SND1-203ENST00000463020 CHGAP10645 457 aaKnown RBP24.38■■□□□ 1.49
SND1-203ENST00000463020 TBX22Q9Y458 520 aa24.38■■□□□ 1.49
SND1-203ENST00000463020 PTPRUQ92729 1446 aa24.37■■□□□ 1.49
SND1-203ENST00000463020 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.37■■□□□ 1.49
SND1-203ENST00000463020 IQGAP3Q86VI3 1631 aa24.34■■□□□ 1.49
SND1-203ENST00000463020 AHDC1Q5TGY3 1603 aaPredicted RBP24.32■■□□□ 1.48
SND1-203ENST00000463020 DIP2AQ14689 1571 aa24.32■■□□□ 1.48
SND1-203ENST00000463020 NCOA3Q9Y6Q9 1424 aa24.31■■□□□ 1.48
SND1-203ENST00000463020 C14orf37Q86TY3 774 aa24.3■■□□□ 1.48
SND1-203ENST00000463020 NRXN3Q9Y4C0 1643 aa24.29■■□□□ 1.48
SND1-203ENST00000463020 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.29■■□□□ 1.48
SND1-203ENST00000463020 HDGFP51858 240 aaKnown RBP24.27■■□□□ 1.48
SND1-203ENST00000463020 SHPRHQ149N8 1683 aa24.27■■□□□ 1.48
SND1-203ENST00000463020 ROCK1Q13464 1354 aa24.27■■□□□ 1.48
SND1-203ENST00000463020 TRPM2O94759 1503 aa24.26■■□□□ 1.47
SND1-203ENST00000463020 C19orf44Q9H6X5 657 aa24.26■■□□□ 1.47
SND1-203ENST00000463020 AMOTL2Q9Y2J4 779 aa24.26■■□□□ 1.47
SND1-203ENST00000463020 PIK3R4Q99570 1358 aa24.26■■□□□ 1.47
SND1-203ENST00000463020 BRINP3Q76B58 766 aa24.25■■□□□ 1.47
SND1-203ENST00000463020 NUP155O75694 1391 aa24.25■■□□□ 1.47
SND1-203ENST00000463020 XRN1Q8IZH2 1706 aaKnown RBP24.24■■□□□ 1.47
SND1-203ENST00000463020 CADPS2Q86UW7 1296 aa24.24■■□□□ 1.47
SND1-203ENST00000463020 SPATA31A6Q5VVP1 1343 aa24.24■■□□□ 1.47
SND1-203ENST00000463020 ATF3P18847 181 aa24.23■■□□□ 1.47
SND1-203ENST00000463020 ITGAEP38570 1179 aa24.21■■□□□ 1.47
SND1-203ENST00000463020 MEX3CQ5U5Q3 659 aaKnown RBP24.21■■□□□ 1.47
SND1-203ENST00000463020 TRIM52Q96A61 297 aa24.21■■□□□ 1.47
SND1-203ENST00000463020 ASXL1Q8IXJ9 1541 aa24.2■■□□□ 1.47
SND1-203ENST00000463020 METP08581 1390 aa24.19■■□□□ 1.46
SND1-203ENST00000463020 SETBP1Q9Y6X0 1596 aa24.19■■□□□ 1.46
SND1-203ENST00000463020 MST1RQ04912 1400 aa24.18■■□□□ 1.46
SND1-203ENST00000463020 UPF1Q92900 1129 aaKnown RBP eCLIP24.18■■□□□ 1.46
SND1-203ENST00000463020 NUTM2BA6NNL0 878 aaPredicted RBP24.17■■□□□ 1.46
SND1-203ENST00000463020 NUTM2EB1AL46 878 aaPredicted RBP24.17■■□□□ 1.46
SND1-203ENST00000463020 PPARGC1BQ86YN6 1023 aaKnown RBP24.17■■□□□ 1.46
SND1-203ENST00000463020 NUTM2AQ8IVF1 878 aaPredicted RBP24.17■■□□□ 1.46
SND1-203ENST00000463020 DDX17Q92841 729 aaKnown RBP24.17■■□□□ 1.46
SND1-203ENST00000463020 SPHKAPQ2M3C7 1700 aa24.15■■□□□ 1.46
SND1-203ENST00000463020 ZNF772Q68DY9 489 aaPredicted RBP24.15■■□□□ 1.46
SND1-203ENST00000463020 DCCP43146 1447 aa24.15■■□□□ 1.46
SND1-203ENST00000463020 NHSL1Q5SYE7 1610 aa24.14■■□□□ 1.46
SND1-203ENST00000463020 CLTCL1P53675 1640 aa24.13■■□□□ 1.45
SND1-203ENST00000463020 SETD5Q9C0A6 1442 aa24.12■■□□□ 1.45
SND1-203ENST00000463020 NEXMIFQ5QGS0 1516 aa24.11■■□□□ 1.45
SND1-203ENST00000463020 NALCNQ8IZF0 1738 aa24.11■■□□□ 1.45
SND1-203ENST00000463020 AFF2P51816 1311 aa24.1■■□□□ 1.45
SND1-203ENST00000463020 ZNF326Q5BKZ1 582 aaKnown RBP24.09■■□□□ 1.45
SND1-203ENST00000463020 RXRBP28702 533 aa24.08■■□□□ 1.45
SND1-203ENST00000463020 ADGRL3Q9HAR2 1447 aa24.08■■□□□ 1.44
SND1-203ENST00000463020 PNPLA6Q8IY17 1366 aa24.06■■□□□ 1.44
SND1-203ENST00000463020 SRCAPQ6ZRS2 3230 aa24.06■■□□□ 1.44
SND1-203ENST00000463020 RGS12O14924 1447 aa24.04■■□□□ 1.44
SND1-203ENST00000463020 CDK12Q9NYV4 1490 aaPredicted RBP24.03■■□□□ 1.44
SND1-203ENST00000463020 C8orf37Q96NL8 207 aa24.01■■□□□ 1.43
SND1-203ENST00000463020 C1orf167Q5SNV9 1468 aa24■■□□□ 1.43
SND1-203ENST00000463020 LRRC59Q96AG4 307 aaKnown RBP23.99■■□□□ 1.43
SND1-203ENST00000463020 ROBO2Q9HCK4 1378 aa23.99■■□□□ 1.43
SND1-203ENST00000463020 ORAI2Q96SN7 254 aa23.96■■□□□ 1.43
SND1-203ENST00000463020 LAMC1P11047 1609 aa23.95■■□□□ 1.43
SND1-203ENST00000463020 NAIPQ13075 1403 aa23.95■■□□□ 1.42
SND1-203ENST00000463020 QTRT2Q9H974 415 aaKnown RBP23.95■■□□□ 1.42
SND1-203ENST00000463020 PTCH1Q13635 1447 aa23.94■■□□□ 1.42
SND1-203ENST00000463020 ADAMTS2O95450 1211 aa23.94■■□□□ 1.42
SND1-203ENST00000463020 KIF1BO60333 1816 aa23.92■■□□□ 1.42
SND1-203ENST00000463020 RBM6P78332 1123 aaKnown RBP23.9■■□□□ 1.42
SND1-203ENST00000463020 SOS2Q07890 1332 aaPredicted RBP23.89■■□□□ 1.42
SND1-203ENST00000463020 EP400Q96L91 3159 aa23.89■■□□□ 1.41
SND1-203ENST00000463020 RRBP1Q9P2E9 1410 aaKnown RBP23.88■■□□□ 1.41
SND1-203ENST00000463020 PRAG1Q86YV5 1406 aa23.87■■□□□ 1.41
SND1-203ENST00000463020 NGLY1Q96IV0 654 aa23.87■■□□□ 1.41
SND1-203ENST00000463020 PPLO60437 1756 aa23.84■■□□□ 1.41
SND1-203ENST00000463020 COL22A1Q8NFW1 1626 aaPredicted RBP23.83■■□□□ 1.41
SND1-203ENST00000463020 VGFO15240 615 aaPredicted RBP23.81■■□□□ 1.4
SND1-203ENST00000463020 FOXD1Q16676 465 aa23.81■■□□□ 1.4
SND1-203ENST00000463020 USP21Q9UK80 565 aa23.81■■□□□ 1.4
SND1-203ENST00000463020 MYOM2P54296 1465 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms