RNA–Protein interactions for RNA: ENST00000462351.5

PTPRN-211, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 5,099 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-211ENST00000462351 MRE11P49959 708 aa17.72■□□□□ 0.43
PTPRN-211ENST00000462351 H0YHG0 523 aa17.71■□□□□ 0.43
PTPRN-211ENST00000462351 U2AF1L5P0DN76 240 aaPredicted RBP17.71■□□□□ 0.43
PTPRN-211ENST00000462351 U2AF1Q01081 240 aaKnown RBP eCLIP17.71■□□□□ 0.43
PTPRN-211ENST00000462351 CLUAP1Q96AJ1 413 aa17.71■□□□□ 0.43
PTPRN-211ENST00000462351 HDGFL2Q7Z4V5 671 aaPredicted RBP17.71■□□□□ 0.43
PTPRN-211ENST00000462351 MNS1Q8NEH6 495 aa17.71■□□□□ 0.43
PTPRN-211ENST00000462351 RDXP35241 583 aaKnown RBP17.71■□□□□ 0.43
PTPRN-211ENST00000462351 AK7Q96M32 723 aa17.7■□□□□ 0.42
PTPRN-211ENST00000462351 WASHC2CQ9Y4E1 1318 aa17.7■□□□□ 0.42
PTPRN-211ENST00000462351 DNMBPQ6XZF7 1577 aa17.7■□□□□ 0.42
PTPRN-211ENST00000462351 CENPJQ9HC77 1338 aaPredicted RBP17.69■□□□□ 0.42
PTPRN-211ENST00000462351 RUFY1Q96T51 708 aa17.69■□□□□ 0.42
PTPRN-211ENST00000462351 H3BQV1 296 aa17.69■□□□□ 0.42
PTPRN-211ENST00000462351 IFFO2Q5TF58 517 aa17.69■□□□□ 0.42
PTPRN-211ENST00000462351 CCDC144AA2RUR9 1427 aa17.68■□□□□ 0.42
PTPRN-211ENST00000462351 NCOA2Q15596 1464 aa17.67■□□□□ 0.42
PTPRN-211ENST00000462351 SOX12O15370 315 aa17.67■□□□□ 0.42
PTPRN-211ENST00000462351 UACAQ9BZF9 1416 aa17.67■□□□□ 0.42
PTPRN-211ENST00000462351 TAF7LQ5H9L4 462 aa17.67■□□□□ 0.42
PTPRN-211ENST00000462351 STK31Q9BXU1 1019 aa17.66■□□□□ 0.42
PTPRN-211ENST00000462351 IFT57Q9NWB7 429 aa17.66■□□□□ 0.42
PTPRN-211ENST00000462351 HMGN5P82970 282 aaKnown RBP17.66■□□□□ 0.42
PTPRN-211ENST00000462351 FAM184AQ8NB25 1140 aa17.66■□□□□ 0.42
PTPRN-211ENST00000462351 NFKBIBQ15653 356 aa17.65■□□□□ 0.42
PTPRN-211ENST00000462351 GORABQ5T7V8 394 aa17.65■□□□□ 0.42
PTPRN-211ENST00000462351 FOXD4L6Q3SYB3 417 aaPredicted RBP17.65■□□□□ 0.42
PTPRN-211ENST00000462351 FOXD4L3Q6VB84 417 aaPredicted RBP17.65■□□□□ 0.42
PTPRN-211ENST00000462351 NLRP13Q86W25 1043 aa17.64■□□□□ 0.42
PTPRN-211ENST00000462351 DCTN1Q14203 1278 aa17.64■□□□□ 0.41
PTPRN-211ENST00000462351 CCDC39Q9UFE4 941 aa17.63■□□□□ 0.41
PTPRN-211ENST00000462351 ABCA10Q8WWZ4 1543 aa17.63■□□□□ 0.41
PTPRN-211ENST00000462351 ST20-MTHFSA0A0A6YYL1 179 aa17.62■□□□□ 0.41
PTPRN-211ENST00000462351 ANKRD20A12PQ8NF67 263 aa17.62■□□□□ 0.41
PTPRN-211ENST00000462351 GRIN2BQ13224 1484 aa17.62■□□□□ 0.41
PTPRN-211ENST00000462351 NUCB2P80303 420 aa17.62■□□□□ 0.41
PTPRN-211ENST00000462351 NUTM2DQ5VT03 806 aaPredicted RBP17.62■□□□□ 0.41
PTPRN-211ENST00000462351 NASPP49321 788 aaPredicted RBP17.61■□□□□ 0.41
PTPRN-211ENST00000462351 MAP3K1Q13233 1512 aa17.61■□□□□ 0.41
PTPRN-211ENST00000462351 PCF11O94913 1555 aaKnown RBP17.6■□□□□ 0.41
PTPRN-211ENST00000462351 ZNF644Q9H582 1327 aaPredicted RBP17.6■□□□□ 0.41
PTPRN-211ENST00000462351 ERCC4Q92889 916 aaPredicted RBP17.6■□□□□ 0.41
PTPRN-211ENST00000462351 RRP9O43818 475 aaKnown RBP17.59■□□□□ 0.41
PTPRN-211ENST00000462351 CGNL1Q0VF96 1302 aa17.58■□□□□ 0.41
PTPRN-211ENST00000462351 REC8O95072 547 aa17.58■□□□□ 0.41
PTPRN-211ENST00000462351 EXOC6Q8TAG9 804 aa17.58■□□□□ 0.4
PTPRN-211ENST00000462351 KIF15Q9NS87 1388 aa17.58■□□□□ 0.4
PTPRN-211ENST00000462351 OSCARQ8IYS5 282 aa17.57■□□□□ 0.4
PTPRN-211ENST00000462351 LEKR1Q6ZMV7 388 aa17.57■□□□□ 0.4
PTPRN-211ENST00000462351 MARCH6O60337 910 aa17.57■□□□□ 0.4
PTPRN-211ENST00000462351 TERF2IPQ9NYB0 399 aa17.57■□□□□ 0.4
PTPRN-211ENST00000462351 BRPF3Q9ULD4 1205 aa17.57■□□□□ 0.4
PTPRN-211ENST00000462351 BICD2Q8TD16 824 aa17.57■□□□□ 0.4
PTPRN-211ENST00000462351 SASS6Q6UVJ0 657 aa17.56■□□□□ 0.4
PTPRN-211ENST00000462351 CPLX2Q6PUV4 134 aaKnown RBP17.56■□□□□ 0.4
PTPRN-211ENST00000462351 RRP1P56182 461 aaKnown RBP17.56■□□□□ 0.4
PTPRN-211ENST00000462351 HSP90AB3PQ58FF7 597 aa17.56■□□□□ 0.4
PTPRN-211ENST00000462351 USP47Q96K76 1375 aa17.56■□□□□ 0.4
PTPRN-211ENST00000462351 EHBP1L1Q8N3D4 1523 aa17.56■□□□□ 0.4
PTPRN-211ENST00000462351 ANKRD45Q5TZF3 282 aa17.55■□□□□ 0.4
PTPRN-211ENST00000462351 SLC4A10Q6U841 1118 aa17.55■□□□□ 0.4
PTPRN-211ENST00000462351 IL27Q8NEV9 243 aa17.55■□□□□ 0.4
PTPRN-211ENST00000462351 TRAK1Q9UPV9 953 aa17.55■□□□□ 0.4
PTPRN-211ENST00000462351 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.55■□□□□ 0.4
PTPRN-211ENST00000462351 MCTP1Q6DN14 999 aa17.55■□□□□ 0.4
PTPRN-211ENST00000462351 TSPYL1Q9H0U9 437 aa17.55■□□□□ 0.4
PTPRN-211ENST00000462351 CUL7Q14999 1698 aa17.54■□□□□ 0.4
PTPRN-211ENST00000462351 TOMM22Q9NS69 142 aa17.54■□□□□ 0.4
PTPRN-211ENST00000462351 PCMTD1Q96MG8 357 aaPredicted RBP17.54■□□□□ 0.4
PTPRN-211ENST00000462351 MRC2Q9UBG0 1479 aa17.54■□□□□ 0.4
PTPRN-211ENST00000462351 PRDM2Q13029 1718 aa17.54■□□□□ 0.4
PTPRN-211ENST00000462351 RBM10P98175 930 aaKnown RBP17.53■□□□□ 0.4
PTPRN-211ENST00000462351 MYBBP1AQ9BQG0 1328 aaKnown RBP17.53■□□□□ 0.4
PTPRN-211ENST00000462351 HOOK1Q9UJC3 728 aaKnown RBP17.53■□□□□ 0.4
PTPRN-211ENST00000462351 RILPL2Q969X0 211 aa17.53■□□□□ 0.4
PTPRN-211ENST00000462351 PANK3Q9H999 370 aa17.53■□□□□ 0.4
PTPRN-211ENST00000462351 CHMP3Q9Y3E7 222 aa17.53■□□□□ 0.4
PTPRN-211ENST00000462351 HFM1A2PYH4 1435 aa17.52■□□□□ 0.4
PTPRN-211ENST00000462351 USP8P40818 1118 aa17.51■□□□□ 0.39
PTPRN-211ENST00000462351 ZKSCAN1P17029 563 aaPredicted RBP17.51■□□□□ 0.39
PTPRN-211ENST00000462351 CCDC47Q96A33 483 aaKnown RBP17.51■□□□□ 0.39
PTPRN-211ENST00000462351 PRKRIP1Q9H875 184 aaPredicted RBP17.51■□□□□ 0.39
PTPRN-211ENST00000462351 PAK3O75914 559 aaPredicted RBP17.51■□□□□ 0.39
PTPRN-211ENST00000462351 AKAP17AQ02040 695 aaKnown RBP17.5■□□□□ 0.39
PTPRN-211ENST00000462351 ZBED9Q6R2W3 1325 aa17.5■□□□□ 0.39
PTPRN-211ENST00000462351 TAF3Q5VWG9 929 aa17.5■□□□□ 0.39
PTPRN-211ENST00000462351 CRBNQ96SW2 442 aa17.5■□□□□ 0.39
PTPRN-211ENST00000462351 EID1Q9Y6B2 187 aa17.5■□□□□ 0.39
PTPRN-211ENST00000462351 CYB5RLQ6IPT4 315 aa17.5■□□□□ 0.39
PTPRN-211ENST00000462351 TRAK2O60296 914 aa17.49■□□□□ 0.39
PTPRN-211ENST00000462351 CCDC146Q8IYE0 955 aa17.49■□□□□ 0.39
PTPRN-211ENST00000462351 LMOD3Q0VAK6 560 aa17.49■□□□□ 0.39
PTPRN-211ENST00000462351 PLCD4Q9BRC7 762 aa17.49■□□□□ 0.39
PTPRN-211ENST00000462351 IFT140Q96RY7 1462 aa17.49■□□□□ 0.39
PTPRN-211ENST00000462351 WDR97A6NE52 1622 aa17.49■□□□□ 0.39
PTPRN-211ENST00000462351 LAMC3Q9Y6N6 1575 aa17.49■□□□□ 0.39
PTPRN-211ENST00000462351 DEF6Q9H4E7 631 aa17.49■□□□□ 0.39
PTPRN-211ENST00000462351 ZKSCAN2Q63HK3 967 aa17.48■□□□□ 0.39
PTPRN-211ENST00000462351 CCDC73Q6ZRK6 1079 aa17.48■□□□□ 0.39
PTPRN-211ENST00000462351 PLIN1O60240 522 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms