RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ZFYVE9O95405 1425 aa33.66■■■□□ 2.98
CCDC28B-203ENST00000461819 ZNF326Q5BKZ1 582 aaKnown RBP33.63■■■□□ 2.97
CCDC28B-203ENST00000461819 HDGFP51858 240 aaKnown RBP33.62■■■□□ 2.97
CCDC28B-203ENST00000461819 PPP1R15AO75807 674 aaPredicted RBP33.61■■■□□ 2.97
CCDC28B-203ENST00000461819 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.59■■■□□ 2.97
CCDC28B-203ENST00000461819 NEXMIFQ5QGS0 1516 aa33.54■■■□□ 2.96
CCDC28B-203ENST00000461819 NUTM2DQ5VT03 806 aaPredicted RBP33.54■■■□□ 2.96
CCDC28B-203ENST00000461819 ANKRD30BQ9BXX2 1392 aa33.53■■■□□ 2.96
CCDC28B-203ENST00000461819 BCANQ96GW7 911 aa33.53■■■□□ 2.96
CCDC28B-203ENST00000461819 PLEKHG1Q9ULL1 1385 aa33.52■■■□□ 2.96
CCDC28B-203ENST00000461819 PPLO60437 1756 aa33.51■■■□□ 2.95
CCDC28B-203ENST00000461819 ZNF335Q9H4Z2 1342 aaPredicted RBP33.51■■■□□ 2.95
CCDC28B-203ENST00000461819 SENP3Q9H4L4 574 aaPredicted RBP33.5■■■□□ 2.95
CCDC28B-203ENST00000461819 SPATA31E1Q6ZUB1 1445 aa33.47■■■□□ 2.95
CCDC28B-203ENST00000461819 LTBP4Q8N2S1 1624 aa33.47■■■□□ 2.95
CCDC28B-203ENST00000461819 IFT172Q9UG01 1749 aa33.45■■■□□ 2.94
CCDC28B-203ENST00000461819 RPGRIP1LQ68CZ1 1315 aa33.44■■■□□ 2.94
CCDC28B-203ENST00000461819 RGL3Q3MIN7 710 aa33.43■■■□□ 2.94
CCDC28B-203ENST00000461819 SLC26A8Q96RN1 970 aa33.43■■■□□ 2.94
CCDC28B-203ENST00000461819 PCGF6Q9BYE7 350 aa33.43■■■□□ 2.94
CCDC28B-203ENST00000461819 DIP2AQ14689 1571 aa33.42■■■□□ 2.94
CCDC28B-203ENST00000461819 STRCP1A6NGW2 1772 aa33.41■■■□□ 2.94
CCDC28B-203ENST00000461819 NRXN3Q9Y4C0 1643 aa33.39■■■□□ 2.94
CCDC28B-203ENST00000461819 SETBP1Q9Y6X0 1596 aa33.39■■■□□ 2.94
CCDC28B-203ENST00000461819 CPS1P31327 1500 aa33.38■■■□□ 2.93
CCDC28B-203ENST00000461819 VGFO15240 615 aaPredicted RBP33.37■■■□□ 2.93
CCDC28B-203ENST00000461819 DHX57Q6P158 1386 aaKnown RBP33.36■■■□□ 2.93
CCDC28B-203ENST00000461819 CERKQ8TCT0 537 aa33.35■■■□□ 2.93
CCDC28B-203ENST00000461819 ADAMTS13Q76LX8 1427 aa33.35■■■□□ 2.93
CCDC28B-203ENST00000461819 CHD2O14647 1828 aaKnown RBP33.32■■■□□ 2.92
CCDC28B-203ENST00000461819 TBX22Q9Y458 520 aa33.31■■■□□ 2.92
CCDC28B-203ENST00000461819 NWD1Q149M9 1564 aa33.29■■■□□ 2.92
CCDC28B-203ENST00000461819 SETD1AO15047 1707 aaKnown RBP33.25■■■□□ 2.91
CCDC28B-203ENST00000461819 IQSEC2Q5JU85 1478 aa33.25■■■□□ 2.91
CCDC28B-203ENST00000461819 KCNA6P17658 529 aa33.24■■■□□ 2.91
CCDC28B-203ENST00000461819 MYOM2P54296 1465 aa33.24■■■□□ 2.91
CCDC28B-203ENST00000461819 ALKQ9UM73 1620 aa33.23■■■□□ 2.91
CCDC28B-203ENST00000461819 ADGRF5Q8IZF2 1346 aa33.23■■■□□ 2.91
CCDC28B-203ENST00000461819 PIK3R4Q99570 1358 aa33.22■■■□□ 2.91
CCDC28B-203ENST00000461819 NKTRP30414 1462 aaKnown RBP33.21■■■□□ 2.91
CCDC28B-203ENST00000461819 LRRC7Q96NW7 1537 aa33.21■■■□□ 2.91
CCDC28B-203ENST00000461819 PIK3C2GO75747 1445 aa33.18■■■□□ 2.9
CCDC28B-203ENST00000461819 XIRP1Q702N8 1843 aaKnown RBP33.17■■■□□ 2.9
CCDC28B-203ENST00000461819 METP08581 1390 aa33.17■■■□□ 2.9
CCDC28B-203ENST00000461819 XRN1Q8IZH2 1706 aaKnown RBP33.16■■■□□ 2.9
CCDC28B-203ENST00000461819 LAMC1P11047 1609 aa33.15■■■□□ 2.9
CCDC28B-203ENST00000461819 DCAF11Q8TEB1 546 aa33.15■■■□□ 2.9
CCDC28B-203ENST00000461819 NRXN1Q9ULB1 1477 aa33.15■■■□□ 2.9
CCDC28B-203ENST00000461819 SIN3AQ96ST3 1273 aa33.14■■■□□ 2.9
CCDC28B-203ENST00000461819 PTPRUQ92729 1446 aa33.13■■■□□ 2.89
CCDC28B-203ENST00000461819 KDM2AQ9Y2K7 1162 aa33.13■■■□□ 2.89
CCDC28B-203ENST00000461819 NEUROD1Q13562 356 aa33.12■■■□□ 2.89
CCDC28B-203ENST00000461819 PROSER2Q86WR7 435 aaPredicted RBP33.11■■■□□ 2.89
CCDC28B-203ENST00000461819 AMOTL2Q9Y2J4 779 aa33.11■■■□□ 2.89
CCDC28B-203ENST00000461819 STAC3Q96MF2 364 aa33.08■■■□□ 2.89
CCDC28B-203ENST00000461819 TMEM94Q12767 1356 aa33.08■■■□□ 2.89
CCDC28B-203ENST00000461819 FBXO41Q8TF61 875 aa33.06■■■□□ 2.88
CCDC28B-203ENST00000461819 RBM33Q96EV2 1170 aaKnown RBP33.04■■■□□ 2.88
CCDC28B-203ENST00000461819 ASXL1Q8IXJ9 1541 aa33.02■■■□□ 2.88
CCDC28B-203ENST00000461819 UBAP1LF5GYI3 381 aa33■■■□□ 2.87
CCDC28B-203ENST00000461819 C14orf93Q9H972 538 aaKnown RBP33■■■□□ 2.87
CCDC28B-203ENST00000461819 CFAP70Q5T0N1 1121 aa32.99■■■□□ 2.87
CCDC28B-203ENST00000461819 KNDC1Q76NI1 1749 aa32.98■■■□□ 2.87
CCDC28B-203ENST00000461819 C14orf37Q86TY3 774 aa32.97■■■□□ 2.87
CCDC28B-203ENST00000461819 L3MBTL2Q969R5 705 aa32.97■■■□□ 2.87
CCDC28B-203ENST00000461819 PTCH1Q13635 1447 aa32.96■■■□□ 2.87
CCDC28B-203ENST00000461819 TMEM132EQ6IEE7 984 aa32.96■■■□□ 2.87
CCDC28B-203ENST00000461819 MSH6P52701 1360 aa32.95■■■□□ 2.86
CCDC28B-203ENST00000461819 PRAG1Q86YV5 1406 aa32.94■■■□□ 2.86
CCDC28B-203ENST00000461819 NCOA3Q9Y6Q9 1424 aa32.94■■■□□ 2.86
CCDC28B-203ENST00000461819 KIAA1210Q9ULL0 1709 aa32.94■■■□□ 2.86
CCDC28B-203ENST00000461819 TOM1O60784 492 aa32.93■■■□□ 2.86
CCDC28B-203ENST00000461819 STK26Q9P289 416 aa32.93■■■□□ 2.86
CCDC28B-203ENST00000461819 LRPPRCP42704 1394 aaKnown RBP32.93■■■□□ 2.86
CCDC28B-203ENST00000461819 TONSLQ96HA7 1378 aa32.93■■■□□ 2.86
CCDC28B-203ENST00000461819 YTHDC2Q9H6S0 1430 aaKnown RBP32.93■■■□□ 2.86
CCDC28B-203ENST00000461819 ILDR1Q86SU0 546 aaPredicted RBP32.92■■■□□ 2.86
CCDC28B-203ENST00000461819 ROBO2Q9HCK4 1378 aa32.91■■■□□ 2.86
CCDC28B-203ENST00000461819 ADGRB1O14514 1584 aa32.9■■■□□ 2.86
CCDC28B-203ENST00000461819 NALCNQ8IZF0 1738 aa32.9■■■□□ 2.86
CCDC28B-203ENST00000461819 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.9■■■□□ 2.86
CCDC28B-203ENST00000461819 TECPR2O15040 1411 aa32.88■■■□□ 2.85
CCDC28B-203ENST00000461819 SCAF1Q9H7N4 1312 aaKnown RBP32.87■■■□□ 2.85
CCDC28B-203ENST00000461819 ABCC11Q96J66 1382 aa32.86■■■□□ 2.85
CCDC28B-203ENST00000461819 CLSPNQ9HAW4 1339 aa32.86■■■□□ 2.85
CCDC28B-203ENST00000461819 CCER1Q8TC90 406 aaPredicted RBP32.86■■■□□ 2.85
CCDC28B-203ENST00000461819 PIP4K2BP78356 416 aa32.84■■■□□ 2.85
CCDC28B-203ENST00000461819 ADGRL3Q9HAR2 1447 aa32.83■■■□□ 2.85
CCDC28B-203ENST00000461819 C19orf44Q9H6X5 657 aa32.82■■■□□ 2.84
CCDC28B-203ENST00000461819 TRPM1Q7Z4N2 1603 aa32.8■■■□□ 2.84
CCDC28B-203ENST00000461819 DLC1Q96QB1 1528 aa32.79■■■□□ 2.84
CCDC28B-203ENST00000461819 DCCP43146 1447 aa32.78■■■□□ 2.84
CCDC28B-203ENST00000461819 ATF3P18847 181 aa32.78■■■□□ 2.84
CCDC28B-203ENST00000461819 FAM135BQ49AJ0 1406 aa32.77■■■□□ 2.84
CCDC28B-203ENST00000461819 CADPS2Q86UW7 1296 aa32.76■■■□□ 2.83
CCDC28B-203ENST00000461819 ARHGEF28Q8N1W1 1705 aaKnown RBP32.76■■■□□ 2.83
CCDC28B-203ENST00000461819 WAPLQ7Z5K2 1190 aa32.75■■■□□ 2.83
CCDC28B-203ENST00000461819 TRAK1Q9UPV9 953 aa32.75■■■□□ 2.83
CCDC28B-203ENST00000461819 PLEKHH1Q9ULM0 1364 aa32.74■■■□□ 2.83
CCDC28B-203ENST00000461819 NBPF1Q3BBV0 1214 aa32.72■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms