RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 NEXMIFQ5QGS0 1516 aa17.61■□□□□ 0.41
VPS52-213ENST00000461743 MPHOSPH9Q99550 1183 aa17.6■□□□□ 0.41
VPS52-213ENST00000461743 STRCP1A6NGW2 1772 aa17.6■□□□□ 0.41
VPS52-213ENST00000461743 CCDC144AA2RUR9 1427 aa17.59■□□□□ 0.41
VPS52-213ENST00000461743 NWD1Q149M9 1564 aa17.58■□□□□ 0.41
VPS52-213ENST00000461743 SETBP1Q9Y6X0 1596 aa17.58■□□□□ 0.41
VPS52-213ENST00000461743 PLEKHG1Q9ULL1 1385 aa17.58■□□□□ 0.4
VPS52-213ENST00000461743 LTKP29376 864 aa17.58■□□□□ 0.4
VPS52-213ENST00000461743 HDGFP51858 240 aaKnown RBP17.58■□□□□ 0.4
VPS52-213ENST00000461743 TXNDC2Q86VQ3 553 aa17.58■□□□□ 0.4
VPS52-213ENST00000461743 CHD2O14647 1828 aaKnown RBP17.58■□□□□ 0.4
VPS52-213ENST00000461743 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.57■□□□□ 0.4
VPS52-213ENST00000461743 NRXN3Q9Y4C0 1643 aa17.57■□□□□ 0.4
VPS52-213ENST00000461743 SETD1AO15047 1707 aaKnown RBP17.53■□□□□ 0.4
VPS52-213ENST00000461743 CHGAP10645 457 aaKnown RBP17.53■□□□□ 0.4
VPS52-213ENST00000461743 XIRP1Q702N8 1843 aaKnown RBP17.52■□□□□ 0.4
VPS52-213ENST00000461743 SPATA31E1Q6ZUB1 1445 aa17.52■□□□□ 0.4
VPS52-213ENST00000461743 ZNF335Q9H4Z2 1342 aaPredicted RBP17.51■□□□□ 0.39
VPS52-213ENST00000461743 NKTRP30414 1462 aaKnown RBP17.51■□□□□ 0.39
VPS52-213ENST00000461743 PPP1R15AO75807 674 aaPredicted RBP17.51■□□□□ 0.39
VPS52-213ENST00000461743 TRIM26Q12899 539 aaPredicted RBP17.5■□□□□ 0.39
VPS52-213ENST00000461743 CERKQ8TCT0 537 aa17.5■□□□□ 0.39
VPS52-213ENST00000461743 RPGRIP1LQ68CZ1 1315 aa17.49■□□□□ 0.39
VPS52-213ENST00000461743 FOXD1Q16676 465 aa17.49■□□□□ 0.39
VPS52-213ENST00000461743 ADAMTS13Q76LX8 1427 aa17.48■□□□□ 0.39
VPS52-213ENST00000461743 LAMC1P11047 1609 aa17.48■□□□□ 0.39
VPS52-213ENST00000461743 XRN1Q8IZH2 1706 aaKnown RBP17.48■□□□□ 0.39
VPS52-213ENST00000461743 ZNF326Q5BKZ1 582 aaKnown RBP17.48■□□□□ 0.39
VPS52-213ENST00000461743 PIK3R4Q99570 1358 aa17.48■□□□□ 0.39
VPS52-213ENST00000461743 ANKRD30BQ9BXX2 1392 aa17.48■□□□□ 0.39
VPS52-213ENST00000461743 MYOM2P54296 1465 aa17.45■□□□□ 0.38
VPS52-213ENST00000461743 LRRC7Q96NW7 1537 aa17.45■□□□□ 0.38
VPS52-213ENST00000461743 TBX22Q9Y458 520 aa17.42■□□□□ 0.38
VPS52-213ENST00000461743 ALKQ9UM73 1620 aa17.42■□□□□ 0.38
VPS52-213ENST00000461743 KNDC1Q76NI1 1749 aa17.41■□□□□ 0.38
VPS52-213ENST00000461743 VGFO15240 615 aaPredicted RBP17.41■□□□□ 0.38
VPS52-213ENST00000461743 FBXO41Q8TF61 875 aa17.41■□□□□ 0.38
VPS52-213ENST00000461743 NRXN1Q9ULB1 1477 aa17.4■□□□□ 0.38
VPS52-213ENST00000461743 BCANQ96GW7 911 aa17.4■□□□□ 0.38
VPS52-213ENST00000461743 SLC26A8Q96RN1 970 aa17.4■□□□□ 0.38
VPS52-213ENST00000461743 PRAG1Q86YV5 1406 aa17.39■□□□□ 0.38
VPS52-213ENST00000461743 KCNA6P17658 529 aa17.39■□□□□ 0.37
VPS52-213ENST00000461743 PIK3C2GO75747 1445 aa17.38■□□□□ 0.37
VPS52-213ENST00000461743 NUTM2DQ5VT03 806 aaPredicted RBP17.37■□□□□ 0.37
VPS52-213ENST00000461743 NCOA3Q9Y6Q9 1424 aa17.37■□□□□ 0.37
VPS52-213ENST00000461743 KIAA1210Q9ULL0 1709 aa17.35■□□□□ 0.37
VPS52-213ENST00000461743 PTCH1Q13635 1447 aa17.34■□□□□ 0.37
VPS52-213ENST00000461743 PTPRUQ92729 1446 aa17.33■□□□□ 0.36
VPS52-213ENST00000461743 DHX57Q6P158 1386 aaKnown RBP17.33■□□□□ 0.36
VPS52-213ENST00000461743 STAC3Q96MF2 364 aa17.33■□□□□ 0.36
VPS52-213ENST00000461743 ASXL1Q8IXJ9 1541 aa17.32■□□□□ 0.36
VPS52-213ENST00000461743 NALCNQ8IZF0 1738 aa17.32■□□□□ 0.36
VPS52-213ENST00000461743 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.32■□□□□ 0.36
VPS52-213ENST00000461743 TMEM94Q12767 1356 aa17.31■□□□□ 0.36
VPS52-213ENST00000461743 RGL3Q3MIN7 710 aa17.31■□□□□ 0.36
VPS52-213ENST00000461743 METP08581 1390 aa17.3■□□□□ 0.36
VPS52-213ENST00000461743 TECPR2O15040 1411 aa17.3■□□□□ 0.36
VPS52-213ENST00000461743 ILDR1Q86SU0 546 aaPredicted RBP17.29■□□□□ 0.36
VPS52-213ENST00000461743 DCCP43146 1447 aa17.29■□□□□ 0.36
VPS52-213ENST00000461743 ADGRF5Q8IZF2 1346 aa17.28■□□□□ 0.36
VPS52-213ENST00000461743 TOM1O60784 492 aa17.27■□□□□ 0.36
VPS52-213ENST00000461743 PROSER2Q86WR7 435 aaPredicted RBP17.27■□□□□ 0.36
VPS52-213ENST00000461743 MSH6P52701 1360 aa17.27■□□□□ 0.35
VPS52-213ENST00000461743 SENP3Q9H4L4 574 aaPredicted RBP17.26■□□□□ 0.35
VPS52-213ENST00000461743 AMOTL2Q9Y2J4 779 aa17.26■□□□□ 0.35
VPS52-213ENST00000461743 ADGRB1O14514 1584 aa17.25■□□□□ 0.35
VPS52-213ENST00000461743 UBAP1LF5GYI3 381 aa17.25■□□□□ 0.35
VPS52-213ENST00000461743 ADGRL3Q9HAR2 1447 aa17.24■□□□□ 0.35
VPS52-213ENST00000461743 DLC1Q96QB1 1528 aa17.24■□□□□ 0.35
VPS52-213ENST00000461743 ROBO1Q9Y6N7 1651 aa17.23■□□□□ 0.35
VPS52-213ENST00000461743 LRPPRCP42704 1394 aaKnown RBP17.23■□□□□ 0.35
VPS52-213ENST00000461743 CDC42BPGQ6DT37 1551 aa17.23■□□□□ 0.35
VPS52-213ENST00000461743 ARHGEF28Q8N1W1 1705 aaKnown RBP17.22■□□□□ 0.35
VPS52-213ENST00000461743 YTHDC2Q9H6S0 1430 aaKnown RBP17.21■□□□□ 0.35
VPS52-213ENST00000461743 C14orf93Q9H972 538 aaKnown RBP17.21■□□□□ 0.35
VPS52-213ENST00000461743 ABCC11Q96J66 1382 aa17.2■□□□□ 0.34
VPS52-213ENST00000461743 DCAF11Q8TEB1 546 aa17.2■□□□□ 0.34
VPS52-213ENST00000461743 TRPM1Q7Z4N2 1603 aa17.2■□□□□ 0.34
VPS52-213ENST00000461743 FAM135BQ49AJ0 1406 aa17.2■□□□□ 0.34
VPS52-213ENST00000461743 ROBO2Q9HCK4 1378 aa17.18■□□□□ 0.34
VPS52-213ENST00000461743 ADGRB2O60241 1585 aa17.18■□□□□ 0.34
VPS52-213ENST00000461743 C19orf44Q9H6X5 657 aa17.17■□□□□ 0.34
VPS52-213ENST00000461743 FMN2Q9NZ56 1722 aa17.16■□□□□ 0.34
VPS52-213ENST00000461743 CADPS2Q86UW7 1296 aa17.16■□□□□ 0.34
VPS52-213ENST00000461743 NHSL1Q5SYE7 1610 aa17.15■□□□□ 0.34
VPS52-213ENST00000461743 C14orf37Q86TY3 774 aa17.15■□□□□ 0.34
VPS52-213ENST00000461743 CLSPNQ9HAW4 1339 aa17.15■□□□□ 0.34
VPS52-213ENST00000461743 PHLPP1O60346 1717 aa17.14■□□□□ 0.33
VPS52-213ENST00000461743 CFAP70Q5T0N1 1121 aa17.14■□□□□ 0.33
VPS52-213ENST00000461743 SIRT1Q96EB6 747 aa17.14■□□□□ 0.33
VPS52-213ENST00000461743 PCGF6Q9BYE7 350 aa17.14■□□□□ 0.33
VPS52-213ENST00000461743 AHDC1Q5TGY3 1603 aaPredicted RBP17.14■□□□□ 0.33
VPS52-213ENST00000461743 MST1RQ04912 1400 aa17.13■□□□□ 0.33
VPS52-213ENST00000461743 ATF3P18847 181 aa17.12■□□□□ 0.33
VPS52-213ENST00000461743 RBM33Q96EV2 1170 aaKnown RBP17.12■□□□□ 0.33
VPS52-213ENST00000461743 KDM2AQ9Y2K7 1162 aa17.12■□□□□ 0.33
VPS52-213ENST00000461743 PIP4K2BP78356 416 aa17.11■□□□□ 0.33
VPS52-213ENST00000461743 SIN3AQ96ST3 1273 aa17.11■□□□□ 0.33
VPS52-213ENST00000461743 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
VPS52-213ENST00000461743 KIF1AQ12756 1690 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms