RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 PIP4K2BP78356 416 aa21.17■□□□□ 0.98
USP4-206ENST00000461553 NKTRP30414 1462 aaKnown RBP21.15■□□□□ 0.98
USP4-206ENST00000461553 NAIPQ13075 1403 aa21.15■□□□□ 0.98
USP4-206ENST00000461553 DISP3Q9P2K9 1392 aa21.15■□□□□ 0.98
USP4-206ENST00000461553 CHD2O14647 1828 aaKnown RBP21.15■□□□□ 0.98
USP4-206ENST00000461553 PLEKHG1Q9ULL1 1385 aa21.14■□□□□ 0.98
USP4-206ENST00000461553 PPP1R15AO75807 674 aaPredicted RBP21.14■□□□□ 0.97
USP4-206ENST00000461553 DIP2AQ14689 1571 aa21.14■□□□□ 0.97
USP4-206ENST00000461553 CHGAP10645 457 aaKnown RBP21.13■□□□□ 0.97
USP4-206ENST00000461553 KIF1BO60333 1816 aa21.13■□□□□ 0.97
USP4-206ENST00000461553 HFM1A2PYH4 1435 aa21.12■□□□□ 0.97
USP4-206ENST00000461553 BCANQ96GW7 911 aa21.12■□□□□ 0.97
USP4-206ENST00000461553 TRPM2O94759 1503 aa21.11■□□□□ 0.97
USP4-206ENST00000461553 HDGFP51858 240 aaKnown RBP21.11■□□□□ 0.97
USP4-206ENST00000461553 SLC26A8Q96RN1 970 aa21.11■□□□□ 0.97
USP4-206ENST00000461553 CLTCL1P53675 1640 aa21.11■□□□□ 0.97
USP4-206ENST00000461553 KCNA6P17658 529 aa21.08■□□□□ 0.97
USP4-206ENST00000461553 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.08■□□□□ 0.97
USP4-206ENST00000461553 HSPA1LP34931 641 aa21.07■□□□□ 0.96
USP4-206ENST00000461553 TMEM94Q12767 1356 aa21.07■□□□□ 0.96
USP4-206ENST00000461553 SENP3Q9H4L4 574 aaPredicted RBP21.05■□□□□ 0.96
USP4-206ENST00000461553 MED1Q15648 1581 aaPredicted RBP21.05■□□□□ 0.96
USP4-206ENST00000461553 NRXN3Q9Y4C0 1643 aa21.03■□□□□ 0.96
USP4-206ENST00000461553 ADAMTS13Q76LX8 1427 aa21.03■□□□□ 0.96
USP4-206ENST00000461553 SETBP1Q9Y6X0 1596 aa21.02■□□□□ 0.95
USP4-206ENST00000461553 NUTM2DQ5VT03 806 aaPredicted RBP21.01■□□□□ 0.95
USP4-206ENST00000461553 PROSER2Q86WR7 435 aaPredicted RBP21.01■□□□□ 0.95
USP4-206ENST00000461553 ROBO1Q9Y6N7 1651 aa21.01■□□□□ 0.95
USP4-206ENST00000461553 NEXMIFQ5QGS0 1516 aa20.99■□□□□ 0.95
USP4-206ENST00000461553 TRIM52Q96A61 297 aa20.99■□□□□ 0.95
USP4-206ENST00000461553 MSH6P52701 1360 aa20.98■□□□□ 0.95
USP4-206ENST00000461553 PIK3R4Q99570 1358 aa20.98■□□□□ 0.95
USP4-206ENST00000461553 ZNF326Q5BKZ1 582 aaKnown RBP20.97■□□□□ 0.95
USP4-206ENST00000461553 TBX22Q9Y458 520 aa20.97■□□□□ 0.95
USP4-206ENST00000461553 XRN1Q8IZH2 1706 aaKnown RBP20.97■□□□□ 0.95
USP4-206ENST00000461553 RBM33Q96EV2 1170 aaKnown RBP20.94■□□□□ 0.94
USP4-206ENST00000461553 PPLO60437 1756 aa20.94■□□□□ 0.94
USP4-206ENST00000461553 FAM135BQ49AJ0 1406 aa20.94■□□□□ 0.94
USP4-206ENST00000461553 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.93■□□□□ 0.94
USP4-206ENST00000461553 SLC4A1APQ9BWU0 796 aaKnown RBP20.93■□□□□ 0.94
USP4-206ENST00000461553 NCOA3Q9Y6Q9 1424 aa20.92■□□□□ 0.94
USP4-206ENST00000461553 PHLPP1O60346 1717 aa20.91■□□□□ 0.94
USP4-206ENST00000461553 ILDR2Q71H61 639 aa20.91■□□□□ 0.94
USP4-206ENST00000461553 SETD1AO15047 1707 aaKnown RBP20.9■□□□□ 0.94
USP4-206ENST00000461553 PTPRUQ92729 1446 aa20.88■□□□□ 0.93
USP4-206ENST00000461553 C14orf37Q86TY3 774 aa20.88■□□□□ 0.93
USP4-206ENST00000461553 IFT172Q9UG01 1749 aa20.85■□□□□ 0.93
USP4-206ENST00000461553 AMOTL2Q9Y2J4 779 aa20.84■□□□□ 0.93
USP4-206ENST00000461553 CCDC144AA2RUR9 1427 aa20.84■□□□□ 0.93
USP4-206ENST00000461553 NALCNQ8IZF0 1738 aa20.84■□□□□ 0.93
USP4-206ENST00000461553 PHF23Q9BUL5 403 aaPredicted RBP20.83■□□□□ 0.93
USP4-206ENST00000461553 DCCP43146 1447 aa20.82■□□□□ 0.92
USP4-206ENST00000461553 METP08581 1390 aa20.82■□□□□ 0.92
USP4-206ENST00000461553 SLAIN2Q9P270 581 aa20.81■□□□□ 0.92
USP4-206ENST00000461553 COL16A1Q07092 1604 aaPredicted RBP20.81■□□□□ 0.92
USP4-206ENST00000461553 RPGRIP1LQ68CZ1 1315 aa20.79■□□□□ 0.92
USP4-206ENST00000461553 ACIN1Q9UKV3 1341 aaKnown RBP20.79■□□□□ 0.92
USP4-206ENST00000461553 SETD5Q9C0A6 1442 aa20.79■□□□□ 0.92
USP4-206ENST00000461553 AHDC1Q5TGY3 1603 aaPredicted RBP20.79■□□□□ 0.92
USP4-206ENST00000461553 ATF3P18847 181 aa20.79■□□□□ 0.92
USP4-206ENST00000461553 FOXD1Q16676 465 aa20.79■□□□□ 0.92
USP4-206ENST00000461553 CADPS2Q86UW7 1296 aa20.79■□□□□ 0.92
USP4-206ENST00000461553 SOCS7O14512 581 aa20.78■□□□□ 0.92
USP4-206ENST00000461553 VGFO15240 615 aaPredicted RBP20.78■□□□□ 0.92
USP4-206ENST00000461553 C19orf44Q9H6X5 657 aa20.78■□□□□ 0.92
USP4-206ENST00000461553 MPHOSPH9Q99550 1183 aa20.77■□□□□ 0.92
USP4-206ENST00000461553 PTCH1Q13635 1447 aa20.77■□□□□ 0.91
USP4-206ENST00000461553 ADGRL3Q9HAR2 1447 aa20.77■□□□□ 0.91
USP4-206ENST00000461553 SPATA31E1Q6ZUB1 1445 aa20.74■□□□□ 0.91
USP4-206ENST00000461553 NHSL1Q5SYE7 1610 aa20.74■□□□□ 0.91
USP4-206ENST00000461553 SHPRHQ149N8 1683 aa20.73■□□□□ 0.91
USP4-206ENST00000461553 PRAG1Q86YV5 1406 aa20.73■□□□□ 0.91
USP4-206ENST00000461553 ASXL1Q8IXJ9 1541 aa20.73■□□□□ 0.91
USP4-206ENST00000461553 RAB3GAP2Q9H2M9 1393 aa20.72■□□□□ 0.91
USP4-206ENST00000461553 JCADQ9P266 1359 aa20.72■□□□□ 0.91
USP4-206ENST00000461553 MST1RQ04912 1400 aa20.71■□□□□ 0.91
USP4-206ENST00000461553 KNDC1Q76NI1 1749 aa20.71■□□□□ 0.91
USP4-206ENST00000461553 ANKRD30BQ9BXX2 1392 aa20.7■□□□□ 0.9
USP4-206ENST00000461553 LAMC1P11047 1609 aa20.68■□□□□ 0.9
USP4-206ENST00000461553 RGL3Q3MIN7 710 aa20.66■□□□□ 0.9
USP4-206ENST00000461553 ROBO2Q9HCK4 1378 aa20.66■□□□□ 0.9
USP4-206ENST00000461553 PIK3C2GO75747 1445 aa20.65■□□□□ 0.9
USP4-206ENST00000461553 BRINP3Q76B58 766 aa20.65■□□□□ 0.9
USP4-206ENST00000461553 CDC42BPGQ6DT37 1551 aa20.64■□□□□ 0.9
USP4-206ENST00000461553 ADGRF5Q8IZF2 1346 aa20.64■□□□□ 0.89
USP4-206ENST00000461553 MYOM2P54296 1465 aa20.63■□□□□ 0.89
USP4-206ENST00000461553 TECPR2O15040 1411 aa20.61■□□□□ 0.89
USP4-206ENST00000461553 SPATA31A6Q5VVP1 1343 aa20.6■□□□□ 0.89
USP4-206ENST00000461553 C1orf167Q5SNV9 1468 aa20.6■□□□□ 0.89
USP4-206ENST00000461553 LRP6O75581 1613 aa20.6■□□□□ 0.89
USP4-206ENST00000461553 NRXN1Q9ULB1 1477 aa20.58■□□□□ 0.89
USP4-206ENST00000461553 LRPPRCP42704 1394 aaKnown RBP20.58■□□□□ 0.88
USP4-206ENST00000461553 RGS17Q9UGC6 210 aaPredicted RBP20.57■□□□□ 0.88
USP4-206ENST00000461553 FMN2Q9NZ56 1722 aa20.55■□□□□ 0.88
USP4-206ENST00000461553 YTHDC2Q9H6S0 1430 aaKnown RBP20.54■□□□□ 0.88
USP4-206ENST00000461553 MEX3CQ5U5Q3 659 aaKnown RBP20.54■□□□□ 0.88
USP4-206ENST00000461553 ABCC11Q96J66 1382 aa20.52■□□□□ 0.88
USP4-206ENST00000461553 STK26Q9P289 416 aa20.52■□□□□ 0.88
USP4-206ENST00000461553 KIF1AQ12756 1690 aa20.51■□□□□ 0.87
USP4-206ENST00000461553 HRCP23327 699 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms