RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 CCDC144AA2RUR9 1427 aa32.95■■■□□ 2.87
C9orf3-209ENST00000460573 SLIT1O75093 1534 aa32.94■■■□□ 2.86
C9orf3-209ENST00000460573 CHGAP10645 457 aaKnown RBP32.94■■■□□ 2.86
C9orf3-209ENST00000460573 TMEM131LA2VDJ0 1609 aa32.94■■■□□ 2.86
C9orf3-209ENST00000460573 ANKRD30BQ9BXX2 1392 aa32.93■■■□□ 2.86
C9orf3-209ENST00000460573 TOM1O60784 492 aa32.92■■■□□ 2.86
C9orf3-209ENST00000460573 TMEM2Q9UHN6 1383 aa32.92■■■□□ 2.86
C9orf3-209ENST00000460573 ARHGAP23Q9P227 1491 aa32.91■■■□□ 2.86
C9orf3-209ENST00000460573 LTKP29376 864 aa32.89■■■□□ 2.86
C9orf3-209ENST00000460573 HDGFP51858 240 aaKnown RBP32.89■■■□□ 2.86
C9orf3-209ENST00000460573 PIP4K2BP78356 416 aa32.89■■■□□ 2.86
C9orf3-209ENST00000460573 KIF1BO60333 1816 aa32.88■■■□□ 2.85
C9orf3-209ENST00000460573 BCANQ96GW7 911 aa32.86■■■□□ 2.85
C9orf3-209ENST00000460573 DHX57Q6P158 1386 aaKnown RBP32.85■■■□□ 2.85
C9orf3-209ENST00000460573 DISP3Q9P2K9 1392 aa32.83■■■□□ 2.85
C9orf3-209ENST00000460573 MYO5BQ9ULV0 1848 aa32.83■■■□□ 2.85
C9orf3-209ENST00000460573 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.82■■■□□ 2.84
C9orf3-209ENST00000460573 ZNF326Q5BKZ1 582 aaKnown RBP32.81■■■□□ 2.84
C9orf3-209ENST00000460573 STRCP1A6NGW2 1772 aa32.81■■■□□ 2.84
C9orf3-209ENST00000460573 RIMS2Q9UQ26 1411 aa32.8■■■□□ 2.84
C9orf3-209ENST00000460573 ZFYVE9O95405 1425 aa32.79■■■□□ 2.84
C9orf3-209ENST00000460573 RPGRIP1LQ68CZ1 1315 aa32.78■■■□□ 2.84
C9orf3-209ENST00000460573 PPP1R15AO75807 674 aaPredicted RBP32.77■■■□□ 2.84
C9orf3-209ENST00000460573 LRRC7Q96NW7 1537 aa32.76■■■□□ 2.83
C9orf3-209ENST00000460573 SPATA31E1Q6ZUB1 1445 aa32.76■■■□□ 2.83
C9orf3-209ENST00000460573 SENP3Q9H4L4 574 aaPredicted RBP32.71■■■□□ 2.83
C9orf3-209ENST00000460573 SLC26A8Q96RN1 970 aa32.7■■■□□ 2.83
C9orf3-209ENST00000460573 RGL3Q3MIN7 710 aa32.69■■■□□ 2.82
C9orf3-209ENST00000460573 NEXMIFQ5QGS0 1516 aa32.68■■■□□ 2.82
C9orf3-209ENST00000460573 VGFO15240 615 aaPredicted RBP32.67■■■□□ 2.82
C9orf3-209ENST00000460573 PLEKHG1Q9ULL1 1385 aa32.67■■■□□ 2.82
C9orf3-209ENST00000460573 HSPA1LP34931 641 aa32.65■■■□□ 2.82
C9orf3-209ENST00000460573 NUTM2DQ5VT03 806 aaPredicted RBP32.63■■■□□ 2.81
C9orf3-209ENST00000460573 KCNA6P17658 529 aa32.61■■■□□ 2.81
C9orf3-209ENST00000460573 PPLO60437 1756 aa32.6■■■□□ 2.81
C9orf3-209ENST00000460573 PROSER2Q86WR7 435 aaPredicted RBP32.58■■■□□ 2.81
C9orf3-209ENST00000460573 STAC3Q96MF2 364 aa32.58■■■□□ 2.81
C9orf3-209ENST00000460573 XIRP1Q702N8 1843 aaKnown RBP32.56■■■□□ 2.8
C9orf3-209ENST00000460573 CLSPNQ9HAW4 1339 aa32.56■■■□□ 2.8
C9orf3-209ENST00000460573 SIN3AQ96ST3 1273 aa32.56■■■□□ 2.8
C9orf3-209ENST00000460573 IFT172Q9UG01 1749 aa32.55■■■□□ 2.8
C9orf3-209ENST00000460573 TMEM94Q12767 1356 aa32.54■■■□□ 2.8
C9orf3-209ENST00000460573 TBX22Q9Y458 520 aa32.53■■■□□ 2.8
C9orf3-209ENST00000460573 ALKQ9UM73 1620 aa32.52■■■□□ 2.8
C9orf3-209ENST00000460573 NEUROD1Q13562 356 aa32.52■■■□□ 2.8
C9orf3-209ENST00000460573 SETBP1Q9Y6X0 1596 aa32.52■■■□□ 2.8
C9orf3-209ENST00000460573 NKTRP30414 1462 aaKnown RBP32.51■■■□□ 2.79
C9orf3-209ENST00000460573 DIP2AQ14689 1571 aa32.5■■■□□ 2.79
C9orf3-209ENST00000460573 MYOM2P54296 1465 aa32.5■■■□□ 2.79
C9orf3-209ENST00000460573 ADAMTS13Q76LX8 1427 aa32.5■■■□□ 2.79
C9orf3-209ENST00000460573 DCAF11Q8TEB1 546 aa32.49■■■□□ 2.79
C9orf3-209ENST00000460573 NWD1Q149M9 1564 aa32.49■■■□□ 2.79
C9orf3-209ENST00000460573 ADGRF5Q8IZF2 1346 aa32.48■■■□□ 2.79
C9orf3-209ENST00000460573 RBM33Q96EV2 1170 aaKnown RBP32.47■■■□□ 2.79
C9orf3-209ENST00000460573 CCER1Q8TC90 406 aaPredicted RBP32.46■■■□□ 2.79
C9orf3-209ENST00000460573 CHD2O14647 1828 aaKnown RBP32.46■■■□□ 2.79
C9orf3-209ENST00000460573 NRXN3Q9Y4C0 1643 aa32.45■■■□□ 2.79
C9orf3-209ENST00000460573 MSH6P52701 1360 aa32.45■■■□□ 2.78
C9orf3-209ENST00000460573 NRXN1Q9ULB1 1477 aa32.44■■■□□ 2.78
C9orf3-209ENST00000460573 PIK3R4Q99570 1358 aa32.44■■■□□ 2.78
C9orf3-209ENST00000460573 C14orf37Q86TY3 774 aa32.43■■■□□ 2.78
C9orf3-209ENST00000460573 ILDR2Q71H61 639 aa32.42■■■□□ 2.78
C9orf3-209ENST00000460573 PIK3C2GO75747 1445 aa32.42■■■□□ 2.78
C9orf3-209ENST00000460573 KDM2AQ9Y2K7 1162 aa32.41■■■□□ 2.78
C9orf3-209ENST00000460573 MED1Q15648 1581 aaPredicted RBP32.4■■■□□ 2.78
C9orf3-209ENST00000460573 L3MBTL2Q969R5 705 aa32.39■■■□□ 2.78
C9orf3-209ENST00000460573 PHF23Q9BUL5 403 aaPredicted RBP32.39■■■□□ 2.78
C9orf3-209ENST00000460573 TONSLQ96HA7 1378 aa32.36■■■□□ 2.77
C9orf3-209ENST00000460573 C14orf93Q9H972 538 aaKnown RBP32.34■■■□□ 2.77
C9orf3-209ENST00000460573 METP08581 1390 aa32.32■■■□□ 2.76
C9orf3-209ENST00000460573 ROBO1Q9Y6N7 1651 aa32.31■■■□□ 2.76
C9orf3-209ENST00000460573 FAM135BQ49AJ0 1406 aa32.31■■■□□ 2.76
C9orf3-209ENST00000460573 SETD1AO15047 1707 aaKnown RBP32.31■■■□□ 2.76
C9orf3-209ENST00000460573 LAMC1P11047 1609 aa32.3■■■□□ 2.76
C9orf3-209ENST00000460573 TIMELESSQ9UNS1 1208 aa32.3■■■□□ 2.76
C9orf3-209ENST00000460573 CFAP70Q5T0N1 1121 aa32.27■■■□□ 2.76
C9orf3-209ENST00000460573 AMOTL2Q9Y2J4 779 aa32.27■■■□□ 2.76
C9orf3-209ENST00000460573 PRAG1Q86YV5 1406 aa32.26■■■□□ 2.75
C9orf3-209ENST00000460573 SOCS7O14512 581 aa32.25■■■□□ 2.75
C9orf3-209ENST00000460573 PTPRUQ92729 1446 aa32.25■■■□□ 2.75
C9orf3-209ENST00000460573 NCOA3Q9Y6Q9 1424 aa32.25■■■□□ 2.75
C9orf3-209ENST00000460573 SLAIN2Q9P270 581 aa32.24■■■□□ 2.75
C9orf3-209ENST00000460573 ATF3P18847 181 aa32.23■■■□□ 2.75
C9orf3-209ENST00000460573 XRN1Q8IZH2 1706 aaKnown RBP32.2■■■□□ 2.74
C9orf3-209ENST00000460573 CADPS2Q86UW7 1296 aa32.19■■■□□ 2.74
C9orf3-209ENST00000460573 KIAA1210Q9ULL0 1709 aa32.18■■■□□ 2.74
C9orf3-209ENST00000460573 TMEM132EQ6IEE7 984 aa32.18■■■□□ 2.74
C9orf3-209ENST00000460573 C19orf44Q9H6X5 657 aa32.18■■■□□ 2.74
C9orf3-209ENST00000460573 LRPPRCP42704 1394 aaKnown RBP32.17■■■□□ 2.74
C9orf3-209ENST00000460573 PHLPP1O60346 1717 aa32.17■■■□□ 2.74
C9orf3-209ENST00000460573 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.17■■■□□ 2.74
C9orf3-209ENST00000460573 ASXL1Q8IXJ9 1541 aa32.16■■■□□ 2.74
C9orf3-209ENST00000460573 ABCC11Q96J66 1382 aa32.16■■■□□ 2.74
C9orf3-209ENST00000460573 YTHDC2Q9H6S0 1430 aaKnown RBP32.15■■■□□ 2.74
C9orf3-209ENST00000460573 PTCH1Q13635 1447 aa32.14■■■□□ 2.74
C9orf3-209ENST00000460573 ADGRB1O14514 1584 aa32.13■■■□□ 2.73
C9orf3-209ENST00000460573 TECPR2O15040 1411 aa32.12■■■□□ 2.73
C9orf3-209ENST00000460573 SIRT1Q96EB6 747 aa32.1■■■□□ 2.73
C9orf3-209ENST00000460573 STK26Q9P289 416 aa32.09■■■□□ 2.73
C9orf3-209ENST00000460573 NBPF8Q3BBV2 869 aa32.08■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms